A Bayesian approach to infer nitrogen loading rates from crop and land-use types surrounding private wells in the Central Valley, California

European Geosciences Union (EGU) | May 7th, 2018

This study is focused on nitrogen loading from a wide variety of crop and land-use types in the Central Valley, California, USA, an intensively farmed region with high�

This study is focused on nitrogen loading from a wide variety of crop and land-use types in the Central Valley, California, USA, an intensively farmed region with high agricultural crop diversity. Nitrogen loading rates for several crop types have been measured based on field-scale experiments, and recent research has calculated nitrogen loading rates for crops throughout the Central Valley based on a mass balance approach. However, research is lacking to infer nitrogen loading rates for the broad diversity of crop and land use types directly from groundwater nitrate measurements. Relating groundwater nitrate measurements to specific crops must account for the uncertainty about and multiplicity in contributing crops (and other land uses) to individual well measurements, and for the variability of nitrogen loading within farms and from farm to farm for the same crop type. In this study, we developed a Bayesian regression model that allowed us to estimate land-use-specific groundwater nitrogen loading rate probability distributions for 15 crop and land-use groups based on a database of recent nitrate measurements from 2149 private wells in the Central Valley. The water and natural, rice, and alfalfa and pasture groups had the lowest median estimated nitrogen loading rates, each with a median estimate below 5 kg N ha -1 yr -1. Confined animal feeding operations (dairies) and citrus and subtropical crops had the greatest median estimated nitrogen loading rates at approximately 269 and 65 kg N ha -1 yr-1, respectively. In general, our probability-based estimates compare favorably with previous direct measurements and with mass-balance-based estimates of nitrogen loading. Nitrogen mass-balance-based estimates are larger than our groundwater nitrate derived estimates for manured and non-manured forage, nuts, cotton, tree fruit, and rice crops. These discrepancies are thought to be due to groundwater age mixing, dilution from infiltrating river water, or denitrification between the time when nitrogen leaves the root zone (point of reference for mass-balance derived loading) and the time and location of groundwater measurement.

A brief geologic and hydrologic reconnaissance of the Furnace Creek Wash area, Death Valley National Monument, California

U.S. Geological Survey (USGS) | July 1st, 1964

A case study of canal seepage quantification using gain/loss method and electrical resistivity tomography in an intensively managed water resource system in the Treasure Valley, Idaho, United States

Elsevier | November 12th, 2024

Monitoring groundwater-surface water (GW-SW) interactions is essential for effectively managing the available water resources in semi-arid and arid environments. The focu

Monitoring groundwater-surface water (GW-SW) interactions is essential for effectively managing the available water resources in semi-arid and arid environments. The focus of this study was to quantify how much SW is being exchanged with the shallow GW aquifer in the Treasure Valley (TV), Idaho, USA. Previous water budgets estimated regional canal seepage without incorporating canal variability and flow measurement uncertainty. To address this, we applied both direct (gain/loss) and indirect (electrical resistivity tomography (ERT)) techniques. Direct seepage measurements were taken on canals capturing a range of different characteristics in the TV. The discrete measurements were then used to estimate the total seepage anticipated to be lost from these canals during the irrigation season. Our findings showed high seepage variability across the canals. The ERT inversion approach was utilized before and after the irrigation season by applying an advanced inversion scheme to better constrain the canal seepage spatial variability and uncertainty by quantifying changes in the saturated zone with 2D-ERT results. Temporal changes in the subsurface resistivity were observed due to the lateral flow from the nearby surface canal during the irrigation season. The combination of these approaches improves our understanding of SW-GW interactions in intensively managed irrigation systems.

A conceptual model for floodplains in the Sacramento-San Joaquin Delta

University of California, Davis (UC Davis) | October 3rd, 2012

Floodplains are among the most biologically productive and diverse ecosystems on Earth and they provide significant benefits to society such as attenuation of floodwaters

Floodplains are among the most biologically productive and diverse ecosystems on Earth and they provide significant benefits to society such as attenuation of floodwaters, groundwater recharge, filtration of nutrients and sediments, carbon sequestration, fisheries productivity and recreation.  However, floodplains are also among the most converted and threatened ecosystems.  Floodplain habitats in the Sacramento-San Joaquin Delta, and throughout California’s Central Valley, have been greatly reduced from their historic extent and key processes that create and maintain floodplains, such as flood flows and meander migration, have been greatly altered.  These widespread alterations to habitats and processes have lead to declines in many species’ populations in California’s Central Valley and Delta, creating challenges for both environmental and water management. To address these challenges numerous entities and programs are now focused on restoring floodplains and other Delta habitats.  This paper provides a conceptual model for floodplains that characterizes the key features and identifies the critical processes, drivers, and linkages that allow floodplains to produce a variety of functional outputs of management importance.  These outputs include: (1) the floodplain habitat mosaic, including riparian vegetation and its associated wildlife; (2) spawning and rearing habitat for native fish; and (3) food-web productivity that can support native fish on the floodplain as well as be exported to downstream ecosystems.  The model emphasizes that the production of these outputs from floodplains requires vertical and lateral hydrological connectivity across a broad range of flow conditions.  For example, long-duration flooding in the spring promotes native fish spawning and food-web productivity that benefits native species.

A Conjunctive Use Model for the Tule Groundwater Sub-Basin Area in the Southern-Eastern San Joaquin Valley, California

U.S. Bureau of Reclamation (USBR) | February 4th, 2003

The Tule groundwater sub-basin is an agriculturally-intensive area located in the eastern-central part of the southern San Joaquin Valley, California. Urban and a

The Tule groundwater sub-basin is an agriculturally-intensive area located in the eastern-central part of the southern San Joaquin Valley, California. Urban and agricultural stakeholders in the Tule sub-basin depend on a combination of imported surface water and pumped groundwater to meet their water demands. The water service districts there receive surface water deliveries from the Friant Unit of the Central Valley Project (CVP) (United States Bureau of Reclamation), the State Water Project (SWP) (California Department of Water Resources), the Kings River (United States Army Corps of Engineers), or the Success Reservoir (United States Army Corps of Engineers). All of these surface water sources develop their supplies from run-off and snow melt in the foothills and watersheds of the Sierra Nevada mountain range. The state of California is prone to recurring droughts, some lasting several years. During drought periods, irrigated agriculture depends more heavily on groundwater pumping as surface water supplies are generally less available. To buffer the effects of drought, districts in the Tule sub-basin have cooperatively managed their surface water and groundwater resources conjunctively. During a normal to wet year, excess available surface water supplies (e.g. releases for flood control) are used by some districts to recharge their groundwater reservoirs. However, a prolonged multi-year drought invariably leads to an increased dependence on groundwater pumping and overdraft of the groundwater sub-basin storage. In addition to climate variability, changes in future surface water supplies may also occur due to the passage of the Central Valley Project Improvement Act of 1992, which mandates that 400,000 acre-feet per year of CVP water be released from the Friant Unit into the San Joaquin River for restoration purposes. To better understand the impacts of irrigated agriculture, fluctuating surface water supplies, and groundwater pumping practices on water levels and groundwater storage in the Tule sub-basin area, we developed a GIS-based con- junctive use model to study them. The study area is 541,580 acres in size and contains the entire Tule groundwater sub-basin and parts of the Kaweah and Tulare Lake groundwater sub-basins. The incorporated land in the study area is divided into 26 water service districts: 21 irrigation, water, or public utility districts; 2 major cities; 2 private contractors; and 1 water company. These districts are either completely or partially located within the study area. The study area is further delineated into 9,114 individual land units from a 1985 land use survey of Tulare County. Agriculture is the largest land use, compris- ing 72% of the study area. Native and urban land use comprise 22% and 4% of the study area, respectively. Semi-agricultural and special conditions (i.e. fallow) land use each comprise 1%. Twelve crops account for 95% of the area under agricultural production. Cotton, grain & grass hay, citrus, vineyards, and alfalfa individually represent 20.3, 18.6, 13.6, 13, and 10.3% of the total productive acreage, respectively. Surface water supplies are distributed to the districts and ultimately to the individual land units by a surface water supply system. The surface water supply system in the model is divided into two parts: 1) an inter-district surface water channel network, and 2) an intra-district surface water distribution system. The inter-district channel network consists of the explicitly modeled source and diversion channels which import surface water into the study area and deliver it to individual districts. The intra-district distribution system con- sists of the implicitly modeled district channels (e.g. laterals, ditches, canals, farm turnouts) which deliver surface water to individual land units within each district. The conjunctive use model consists of three loosely-coupled sub-models: 1) a surface water supply (SWS) model, 2) an unsaturated zone water budget (UZWB) model, and 3) a groundwater flow model. The base period of the study covers the fiscal water years of 1970-99. The purpose of the SWS model is to calculate the surface water balance for the source and diversion channels in the inter-district channel network. For each modeled surface water channel, the SWS model computes surface water deliveries from it to each district and conveyance losses from it due to evaporation and channel seepage. The primary model outputs are monthly surface water deliveries to each district and monthly seepage rates from modeled channels. The surface water deliveries became input for the UZWB model. The channel seepage became input for the groundwater flow model as localized aquifer recharge. The allocation of surface water within each district, via the implicitly modeled intra-district surface water distribution system, is estimated by the UZWB model. The total imported surface water for 1970-99 from the CVP and the Success Reservoir are 13,329,262 and 4,653,501 acre-feet (af), respectively. The SWP and the Kings River imported the lesser amounts of 88,625 and 7,332 af, respec- tively. Annual CVP diversions varied from 125,970 af in 1977 to 679,298 af in 1993 with a 30-year annual average of 444,309 af. The Tule River and Pioneer Ditch both receive regulated releases from Success Reservoir. Tule River annual imports varied from 11,034 af in 1977 to 607,154 af in 1983 while the Pioneer Ditch varied from 3,445 af in 1973 to 5,874 af in 1990. The total natural runoff from the Deer Creek and White River from 1970-99 were 703,444 and 219,098 af, respectively. Deer Creek runoff varied from 4,082 af in 1992 to 103,716 af in 1983 while the White River runoff varied from 422 af in 1977 to 37,985 af in 1998. From 1970-99, a total of 15 million af of surface water was applied by the service districts in the study area. The applied surface water varied from a low of 135,482 af in 1977 to a high of 708,293 af in 1996. The Lower Tule River Ir- rigation District and the Delano-Earlimart Irrigation District together account for 59% of the total applied surface water while occupying approximately 40% of the incorporated area in the study area. Over the 30-year base period, an estimated total of 3.5 million af of seepage conveyance loss occurred in all sur- face water channels. Seepage in the Tule River, Deer Creek, and White River accounted for 85% of the total seepage. Total annual seepage varied from a low of 8,128 af in 1977 to 467,084 af in 1983. The UZWB model then calculates the monthly water storage changes in the soil root zone and deep vadose zone of each land unit, where the land unit is the UZWB model scale of resolution. It also models the intra-district surface water distribution system by estimating the monthly allocation of surface water to individual land units within each district. The main model outputs were the recharge to the unconfined aquifer from surface applied water and precipitation, and the groundwater pumping demand from the unconfined and confined aquifers. The recharge and groundwater pumping rates became input for the groundwater flow model. The total annual agricultural and urban consumptive use ranged from 865,800 af in 1970 to 1,246,700 af in 1999. The estimated total pumping ranged from 148,100 af in 1978 to 570,000 af in 1990. As expected, pumping was heaviest during the droughts of 1975-77 and 1987-92, and lightest during the wet years of 1973, 1978, 1982-83, 1995, and 1998. Precipitation totals varied from 177,800 af in 1990 to 974,400 af in 1998. Diffuse recharge from surface applied water ranged from 64,800 af in 1992 to 350,100 af in 1983. The net aquifer recharge for the entire study area was computed by ag- gregating the aquifer recharge and groundwater pumping of each land unit to this scale and adding the contribution to aquifer recharge from channel seepage. The monthly net recharge was then summed to produce a cumulative annual net recharge from 1970 to each fiscal water year from 1971-99. The water balance computed for the entire study area neglects horizontal groundwater inflows and outflows through its vertical boundaries. Groundwater fluxes undoubtedly exist along these boundaries. However, net fluxes are likely small in comparison to the total changes in storage due to vertical stresses applied to the entire study area (e.g. groundwater pumping, evapotranspiration, applied surface water, channel seepage). Horizontal groundwater flow on the inter-land unit and inter-district scales is expected to be more significant. For computing a total water balance, however, we made the simplifying assumption that the study area behaves as a relatively closed system where the net horizontal groundwater inflows through its vertical boundaries are small. Invoking this assumption, we then use the cumulative net recharge as an estimate of the cumulative groundwater storage change in the aquifer system. Ideally, verification of these estimates is performed by comparing them with an objective measure of the study area aquifer storage changes. However, changes in groundwater storage are not directly observable and must always be estimated using non-direct measures. As such, an objec- tive measure for verification does not exist. As an alternative, we compare the water balance model results with those produced by the water-table fluctuation (WTF) method. The trends in cumulative annual groundwater storage changes computed from the water balance and the WTF method from 1970-99 were quite similar. The minimum and maximum differences between them were 2,450 af (1980) and 752,387 af (1991), respectively. From 1970, the maximum amount of ground- water accumulation occurred in the spring of 1987 with the WTF method and the water balance estimating positive storage changes of 1,146,286 and 898,128 af, respectively. The maximum groundwater overdraft occurred in 1993 with the WTF method and the water balance estimating negative storage changes of 1,610,210 and 1,218,566 af, respectively. The 1987 and 1993 fiscal water years marked the beginning and ending of a major 6-year drought in California, respectively. Finally, the groundwater flow model calculates the changes in water levels in the aquifer system subject to transient groundwater recharge and pump- ing stresses. A post-processing routine calculates the cumulative groundwater storage changes over each district and the entire study area for each stress pe- riod. An automated calibration of the groundwater flow model was performed to refine the conceptual model of the hydrogeology and to estimate the spa- tial distributions of the aquifer system horizontal hydraulic conductivity. The calibration period of the groundwater flow model is 1970-85 and the validation period is 1986-99. Three different conceptual models of the aquifer system horizontal hydraulic conductivity, Kh, structure were evaluated in the calibration process: 1) Khas an exponential function of the specific yield, Sy, distribution, 2) Kh as a linear function of the saturated hydraulic conductivity of the soil survey map- ping units, and 3) division of the model domain into square zones of uniform size. The models were calibrated against both spatially distributed hydraulic head targets and cumulative groundwater storage change targets for seven of the largest districts. The discretization of the model domain into uniform square zones provided the most robust Kh structure and produced the most reason- able estimates of hydraulic head and district groundwater storage changes from the three conceptual models over the 1971-85 calibration period. The calibrated model was then used to compute the annual net inter-district groundwater fluxes between adjacent districts. In general, groundwater flux directions were con- sistent with the large-scale hydraulic gradients. Annual inter-district net fluxes between adjacent districts ranged from negligibly small ( < 100 af) to as much as 80,000 af (e.g. net flux from Lower Tule River ID to Pixley ID). Net inter-district fluxes were generally a function of the local transmissivity, the length of the shared border between adjacent districts, and the differences in their surface water supplies.

A database of groundwater wells in the United States

Nature Portfolio (Springer Nature) | April 4th, 2024

Groundwater wells are critical infrastructure that enable the monitoring, extraction, and use of groundwater, which has important implications for the environment, water

Groundwater wells are critical infrastructure that enable the monitoring, extraction, and use of groundwater, which has important implications for the environment, water security, and economic development. Despite the importance of wells, a unified database collecting and standardizing information on the characteristics and locations of these wells across the United States has been lacking. To bridge this gap, we have created a comprehensive database of groundwater well records collected from state and federal agencies, which we call the United States Groundwater Well Database (USGWD). Presented in both tabular form and as vector points, USGWD comprises over 14.2 million well records with attributes, such as well purpose, location, depth, and capacity, for wells constructed as far back as 1763 to 2023. Rigorous cross-verification steps have been applied to ensure the accuracy of the data. The USGWD stands as a valuable tool for improving our understanding of how groundwater is accessed and managed across various regions and sectors within the United States.

A geohydrologic reconnaissance of the Saratoga Spring area, Death Valley National Monument, California

U.S. Geological Survey (USGS) | March 1st, 1966

A geospatial analysis of water-quality threats from orphan wells in principal and secondary aquifers of the United States

Elsevier | May 10th, 2025

This work is the first multivariate geospatial investigation of orphan wells and groundwater resources on a national scale and identifies which aquifers are most susc

This work is the first multivariate geospatial investigation of orphan wells and groundwater resources on a national scale and identifies which aquifers are most susceptible to groundwater contamination from orphan wells.

A global dataset of surface water and groundwater salinity measurements from 1980–2019

Nature Portfolio (Springer Nature) | July 13th, 2020

Salinization of freshwater resources is a growing water quality challenge, which may negatively impact both sectoral water-use and food security, as well as bio

Salinization of freshwater resources is a growing water quality challenge, which may negatively impact both sectoral water-use and food security, as well as biodiversity and ecosystem services. Although monitoring of salinity is relatively common compared to many other water quality parameters, no compilation and harmonisation of available datasets for both surface and groundwater components have been made yet at the global scale. Here, we present a new global salinity database, compiled from electrical conductivity (EC) monitoring data of both surface water (rivers, lakes/reservoirs) and groundwater locations over the period 1980–2019. The data were assembled from a range of sources, including local to global salinity databases, governmental organizations, river basin management commissions and water development boards. Our resulting database comprises more than 16.3 million measurements from 45,103 surface water locations and 208,550 groundwater locations around the world. This database could provide new opportunities for meta-analyses of salinity levels of water resources, as well as for addressing data and model-driven questions related to historic and future salinization patterns and impacts.

A Guide for Using the Transient Ground-Water Flow Model of the Death Valley Regional Ground-Water Flow System, Nevada and California

U.S. Geological Survey (USGS) | November 4th, 2006

This report is a guide for executing numerical simulations with the transient ground-water flow model of the Death Valley regional ground-water flow system, Nevada and Ca

This report is a guide for executing numerical simulations with the transient ground-water flow model of the Death Valley regional ground-water flow system, Nevada and California using the U.S. Geological Survey modular finite-difference ground-water flow model, MODFLOW-2000. Model inputs, including observations of hydraulic head, discharge, and boundary flows, are summarized. Modification of the DVRFS transient ground-water model is discussed for two common uses of the Death Valley regional ground-water flow system model: predictive pumping scenarios that extend beyond the end of the model simulation period (1998), and model simulations with only steady-state conditions.