Fish and Game Commission Twenty-Second Biennial Report for the Years 1910-1912

State of California | December 31st, 1912

Fish Bulletin 133. Ecological Studies of The Sacramento-San Joaquin Estuary Part 1: Zooplankton, Zoobenthos, and Fishes of San Pablo and Suisun Bays, Zooplankton and Zoobenthos of the Delta

California Department of Fish and Wildlife (CDFW) | September 9th, 1965

The Sacramento and San Joaquin Rivers have a common estuary. These two streams meet in the center of California's central valley to form the Delta (Figure 1). A hundred y

The Sacramento and San Joaquin Rivers have a common estuary. These two streams meet in the center of California's central valley to form the Delta (Figure 1). A hundred years ago the Delta was an extensive tidal marsh, but it has been almost entirely reclaimed for agriculture. The Delta now includes about 738,000 acres of land and water, 700 miles of navigable channels, and 30 large, below sea level islands. About 39,000 acres are covered by water. Some Delta channels are edged with narrow stretches of intertidal marsh but most of them have steep banks of mud or are covered with large cobbles to prevent erosion. They vary in width from a few hundred feet to a mile and are seldom more than 30 to 40 feet deep. In some areas there are small "waste" islands that flood during high tides. These waste islands and levees that surround all Delta channels are covered with an assortment of emergent aquatic plants, grasses, forbs, shrubs, and trees. Water heading toward the sea from the Delta passes through Suisun Bay, which is merely the wide combination of the Sacramento and San Joaquin Rivers below the Delta. Thirty-six percent of Suisun Bay is flooded by less than 3 feet of water at mean lower-low tide, and at this stage about 3,000 acres of intertidal zone is exposed. Richard Painter (see p. 40) has included a map of the 6-foot contour. From Suisun Bay the water flows through the 6-mile long and up to 100 feet deep Carquinez Strait into San Pablo Bay. Almost 60 percent of San Pablo Bay's 73,000 acres is less than 6 feet deep at mean lower-low tide. San Pablo Bay has a much more extensive intertidal area than Suisun Bay. San Pablo Bay water flows into San Francisco Bay and then through the narrow Golden Gate into the Pacific Ocean. The investigations reported on in this bulletin were geographically limited to the upper and middle portions of the estuary—from the Delta through San Pablo Bay. We have not investigated below San Pablo Bay. McCarty et al (1962) described south San Francisco Bay, and Storrs, Selleck, and Pearson (1964) described north San Francisco Bay. Gillian (1957) wrote an interesting and useful popular account of the entire bay.

Fish Collections and Secondary Louver Efficiency at the Tracy Fish Collection Facility: October 1993 to September 1995

U.S. Bureau of Reclamation (USBR) | May 29th, 1998

Fish die-offs are concurrent with thermal extremes in north temperate lakes

Nature Portfolio (Springer Nature) | July 8th, 2019

As environmental temperatures continue to rise and organisms experience novel and potentially lethal conditions, the possibility of increased mass mortality events for an

As environmental temperatures continue to rise and organisms experience novel and potentially lethal conditions, the possibility of increased mass mortality events for animal populations appears likely. Yet, due to die-off rarity and unpredictability, there have been few large-scale attempts to quantify the relationship between mass die-offs and local environmental temperatures. Here, we address this issue by analysing a database of 502 freshwater fish die-offs combined with lake-specific temperature profiles simulated for north temperate lake ecosystems. Die-offs driven by extreme summer conditions occurred disproportionately in lakes with warmer average surface temperatures and during periods of extreme heat. In contrast, we observed no relationships between current thermal extremes and die-offs attributed to infectious disease or winter environmental conditions. We forecast fish die-offs driven by summer environmental conditions to double by mid-century for north temperate lakes (2041–2059) and to increase more than fourfold by late century (2081–2099), particularly at southern latitudes. These results expose a direct link between novel temperature regimes and the increased probability of catastrophic ecological events in freshwater ecosystems.

Fish Restoration Program Agreement Implementation Strategy for Habitat Restoration and Other Actions for Listed Delta Fish

California Department of Water Resources (DWR) | March 6th, 2012

The Fish Restoration Program Agreement (FRPA) (Appendix A), between the Department of Fish and Game (DFG) and the Department of Water Resources (DWR), was signed on Octob

The Fish Restoration Program Agreement (FRPA) (Appendix A), between the Department of Fish and Game (DFG) and the Department of Water Resources (DWR), was signed on October 18, 2010. FRPA addresses specific habitat restoration requirements of the US Fish and Wildlife Service (USFWS) and National Marine Fisheries Service (NMFS) biological opinions (Biological Opinions) for State Water Project (SWP) and Central Valley Project (CVP) operations. FRPA is also intended to address the habitat requirements of the DFG Longfin Smelt Incidental Take Permit (ITP) for SWP Delta operations. The primary objective of the FRPA program is to implement the fish habitat restoration requirements and related actions of the Biological Opinions and the ITP in the Delta, Suisun Marsh, and Yolo Bypass and is focused on 8,000 acres of intertidal and associated subtidal habitat to benefit delta smelt, including 800 acres of mesohaline habitat to benefit longfin smelt, and a number of related actions for salmonids. DFG and DWR intend that habitat restoration actions implemented in compliance with the USFWS biological opinion that also meet the habitat restoration requirements of the ITP will operate to satisfy the acreage requirements of the ITP. The purpose of this Implementation Strategy is to describe the process by which DWR and DFG will implement the FRPA program, and to satisfy Section B of FRPA. Section B of FRPA requires DWR, with assistance from DFG, to develop an Implementation Schedule that will identify restoration actions, estimated costs, targeted acreage, and a timeline for DWR’s implementation of restoration actions to satisfy DWR’s obligations under the Biological Opinions and ITP. Appendix B lists the specific habitat restoration requirements of FRPA, the Biological Opinions, and the ITP that pertain to this program. This document lays out the strategy to address these requirements. In addition, DWR and DFG will complete the necessary environmental compliance documents to implement site specific habitat restoration projects; this may include tiering from existing programmatic documents where appropriate. Pursuant to FRPA, DFG will work cooperatively with and assist DWR in establishing the management and financial framework necessary to implement the FRPA program. DWR, with assistance from DFG, will begin a process to fund, plan, and implement actions, including aquatic habitat restoration to benefit delta smelt, longfin smelt, and winter-run and spring-run Chinook salmon (hereafter referred to as Covered Fish Species) to mitigate impacts to these species caused by the SWP Delta operations. Specifically, these actions include: • Delta Smelt Biological Opinion Reasonable and Prudent Alternative (RPA) Component 4; • NMFS Biological Opinion RPA Actions 1.2.6 and 1.6.2 in partnership with the US Bureau of Reclamation (Reclamation); • NMFS Biological Opinion RPA Action Suite 1.6 and 1.7. FRPA will not be lead, but will provide funding and technical support assistance only; • ITP Condition 7. DWR’s obligations focus on delta smelt, longfin smelt, and winter-run and spring-run salmon, and may also benefit steelhead, sturgeon, and other native fish species.

Fish-Habitat Relationships Along the Estuarine Gradient of the Sacramento-San Joaquin Delta, California: Implications for Habitat Restoration

Estuaries and Coasts (Springer) | June 6th, 2018

Estuaries are highly variable environments where fish are subjected to a diverse suite of habitat features (e.g., water quality gradients, physical structure) that filt

Estuaries are highly variable environments where fish are subjected to a diverse suite of habitat features (e.g., water quality gradients, physical structure) that filter local assemblages from a broader, regional species pool. Tidal, climatological, and oceanographic phenomena drive water quality gradients and, ultimately, expose individuals to other habitat features (e.g., stationary physical or biological elements, such as bathymetry or vegetation). Relationships between fish abundances, water quality gradients, and other habitat features in the Sacramento-San Joaquin Delta were examined as a case example to learn how habitat features serve as filters to structure local assemblages in large river-dominated estuaries. Fish communities were sampled in four tidal lakes along the estuarine gradient during summer-fall 2010 and 2011 and relationships with habitat features explored using ordination and generalized linear mixed models (GLMMs). Based on ordination results, landscape-level gradients in salinity, turbidity, and elevation were associated with distinct fish assemblages among tidal lakes. Native fishes were associated with increased salinity and turbidity, and decreased elevation. Within tidal lakes, GLMM results demonstrated that submersed aquatic vegetation density was the dominant driver of individual fish species densities. Both native and non-native species were associated with submersed aquatic vegetation, although native and non-native fish populations only minimally overlapped. These results help to provide a framework for predicting fish species assemblages in novel or changing habitats as they indicate that species assemblages are driven by a combination of location within the estuarine gradient and site-specific habitat features.

Fishes, Hydrology, and Ecology of the Klamath River Basin

National Academy of Sciences (NAS) | February 11th, 2008

The Klamath River basin in southern Oregon and northern California is the focus of a prominent conflict over competing uses for water in the American West. Management mea

The Klamath River basin in southern Oregon and northern California is the focus of a prominent conflict over competing uses for water in the American West. Management measures for the protection of threatened and endangered fish species in the basin that have left less water available for irrigation have increased tensions among farmers and other stakeholders and brought into question the scientific justification of these measures. Two National Research Council studies evaluate a series of federal scientific assessments and recommend scientifically justified approaches to the problem.

Five Decades of Magical Thinking: How California's Water Policy is Founded on a Bankrupt 53-year-old Fantasy

California Water Impact Network (C-WIN) | May 5th, 2012

Recent revelations confirm that California's water policy is founded on a decades-old water deficit, one that will only be compounded by Jerry Brown's Twin Tunnels projec

Recent revelations confirm that California's water policy is founded on a decades-old water deficit, one that will only be compounded by Jerry Brown's Twin Tunnels project—a boondoggle scheme that would attempt to meet unsustainable contractual obligations by draining the Sacramento/San Joaquin Delta of fresh water. The real issue here is not about how water is conveyed; it's about whether there is enough water for more conveyance or storage. When California officials built the State Water Project in 1960, they knew it would run out of water by 1981. To make up the shortfall, the state overappropriated water from the Delta. Operation of the Twin Tunnels is predicated on 1960 water availability estimates of anticipated diversions from north state rivers. These diversions from the Middle Fork Eel, the Mad and Van Duzen Rivers did not occur due to their ultimate state and federal designation as Wild and Scenic Rivers.

Five Guiding Principles for Effective Voluntary Agreements

University of California, Berkeley (UC Berkeley) | January 3rd, 2024

California has increasingly emphasized efforts to develop voluntary agreements (VAs) with water users as a means of achieving regulatory goals in certain watersheds. In t

California has increasingly emphasized efforts to develop voluntary agreements (VAs) with water users as a means of achieving regulatory goals in certain watersheds. In theory, a VA can combine the protectiveness of a regulatory backstop with the creativity and flexibility of a negotiated deal to produce outcomes as good as, or better than, those achievable through strict application of regulatory requirements alone. However, reality has not always measured up to this ideal. This policy paper uses the Bay-Delta watershed as a case study to inform five principles to guide the appropriate use and evaluation of VAs.

Five-century record of climate and groundwater recharge variability in southern California

Nature Portfolio (Springer Nature) | December 3rd, 2019

Modifications to the rates of water flowing from the surface to groundwater (groundwater recharge) due to climate variability are the most difficult to assess because of

Modifications to the rates of water flowing from the surface to groundwater (groundwater recharge) due to climate variability are the most difficult to assess because of the lack of direct long-term observations. Here, we analyze the chloride salt distribution below the surface soil on a plateau near Los Angeles to reconstruct the amount of recharge that occurred in the last five centuries. Over this time interval, periods of major high and low recharge with different duration follow each other and this cyclicity is consistent with long-term atmospheric forcing patterns, such as the Pacific Decadal Oscillation. This study determines the range and the natural variability of recharge to groundwater, which sustains local freshwater flow system, and helps forecast future availability of groundwater resource in southern California, where water scarcity is critical to both local and global populations.