A functional flows approach to selecting ecologically relevant flow metrics for environmental flow applications

River Research and Applications (Wiley) | January 8th, 2020

A global dataset of surface water and groundwater salinity measurements from 1980–2019

Nature Portfolio (Springer Nature) | July 13th, 2020

Salinization of freshwater resources is a growing water quality challenge, which may negatively impact both sectoral water-use and food security, as well as bio

Salinization of freshwater resources is a growing water quality challenge, which may negatively impact both sectoral water-use and food security, as well as biodiversity and ecosystem services. Although monitoring of salinity is relatively common compared to many other water quality parameters, no compilation and harmonisation of available datasets for both surface and groundwater components have been made yet at the global scale. Here, we present a new global salinity database, compiled from electrical conductivity (EC) monitoring data of both surface water (rivers, lakes/reservoirs) and groundwater locations over the period 1980–2019. The data were assembled from a range of sources, including local to global salinity databases, governmental organizations, river basin management commissions and water development boards. Our resulting database comprises more than 16.3 million measurements from 45,103 surface water locations and 208,550 groundwater locations around the world. This database could provide new opportunities for meta-analyses of salinity levels of water resources, as well as for addressing data and model-driven questions related to historic and future salinization patterns and impacts.

A Guide to Ordinary High Water Mark (OHWM) Delineation for Non-Perennial Streams in the Western Mountains, Valleys, and Coast Region of the United States

U.S. Army Corps of Engineers (USACE) | August 14th, 2014

Federal regulations define the ordinary high water mark (OHWM) as “that line on the shore established by the fluctuations of water and indicated by physical cha

Federal regulations define the ordinary high water mark (OHWM) as “that line on the shore established by the fluctuations of water and indicated by physical characteristics such as a clear, natural line impressed on the bank, shelving, changes in the character of soil, destruction of terrestrial vegetation, the presence of litter and debris, or other appropriate means that consider the characteristics of the surrounding areas” (U.S. Congress 1986). Under Section 404 of the Clean Water Act (CWA), the OHWM defines the lateral extent of federal jurisdiction in non-tidal waters of the United States (WoUS) in the absence of adjacent wetlands (U.S. Congress 1977). Thus, accurate and consistent OHWM delineation practices are essential for proper implementation of the CWA. The dynamic nature of stream systems and fluvial processes presents challenges for OHWM delineation. Natural sources of variability in river and stream systems (e.g., climate, sediment supply, landscape position, etc.) are compounded by direct and indirect anthropogenic sources of variability (e.g., watershed alteration, dam emplacement and removal, climate change, etc.). Thus, it is challenging to impose a consistent measure of “ordinary” high flow conditions across systems in which the hydrology and geomorphology can vary greatly in both space and time. OHWM delineation in non-perennial (i.e., intermittent and ephemeral) streams can be especially challenging. The U.S. Army Corps of Engineers (USACE) defines intermittent streams as having “flowing water during certain times of the year, when groundwater provides water for stream flow. During dry periods, intermittent streams may not have flowing water. Runoff from rainfall is a supplemental source of water for stream flow” (USACE 2012). Ephemeral streams have “flowing water only during, and for a short duration after, precipitation events in a typical year. Ephemeral stream beds are located above the water table year-round. Groundwater is not a source of water for the stream,” and “[r]unoff from rainfall is the primary source of water for stream flow” (USACE 2012). In contrast to both intermittent and ephemeral streams, perennial streams have “flowing water year-round during a typical year. The water table is located above the stream bed for most of the year,” and “[g]roundwater is the primary source of water for stream flow” (USACE 2012). Given the less persistent streamflow regimes characteristic of non- perennial streams, particularly ephemeral systems, the characterization of ordinary high water flows is perhaps more challenging than in perennially flowing systems. Moreover, depending on climate, vegetation, and other related factors, the appearance of some OHWM indicators may vary greatly between wet and dry seasons or between relatively infrequent flow events, more so than in many perennial streams. Mountainous terrain can present additional challenges to OHWM delineation. For instance, the relatively steep and confined valleys in which mountain streams commonly flow can restrict the development of some alluvial features (e.g., flood-plains, bankfull benches, etc.) that are typical of low-gradient systems and that may help to identify the OHWM. Thus, in non-perennial mountain streams, it is often difficult to determine what constitutes ordinary high water and to interpret the physical and biological indicators established and maintained by ordinary high water flows. Challenges and inconsistencies pertaining to OHWM delineation practices are becoming increasingly relevant in mountainous parts of the western U.S. in light of expanding development. This increased pressure on fluvial systems highlights the need for accurate, consistent, and repeatable OHWM delineation practices in this region. These factors, combined with the particular challenges of OHWM delineation in non-perennial mountain streams, provided the impetus for developing this delineation guide. This guide presents the concepts, field indicators, and methods for assessing, delineating, and documenting the OHWM in non-perennial streams in the Western Mountains, Valleys, and Coast (WMVC) Region of the United States (Figure 1). The information presented here is based on the findings of Mersel et al. (2014) (discussed in Section 1.5) and on years of field observations and data gathering in the WMVC Region and in other regions of the U.S. by the authors and other contributing experts. The remainder of Section 1 provides background information regarding the concept of the OHWM and pertaining to stream hydrology and geomorphology in general. Section 2 discusses and provides examples of the specific field indicators used to identify the OHWM in non-perennial streams in the WMVC Region. Section 3 discusses field methods for delineating the OHWM and addresses additional techniques and lines of evidence that may help in problematic delineation scenarios. The information presented here is technical guidance and does not define, amend, or replace any existing regulations, laws, or legal guidance related to the OHWM or to the regulation of WoUS. Furthermore, determining whether any stream is a jurisdictional WoUS is beyond the scope of this document and involves further assessment in accordance with regulations, case law, and clarifying guidance. This guide pertains to non-perennial streams in the WMVC Region of the U.S., and while the information presented here may have a wider applicability to other regions or to perennial rivers within the WMVC Region, this has not been tested or validated. This manual serves as a companion to A Field Guide to the Identification of the Ordinary High Water Mark (OHWM) in the Arid West Region of the Western United States (Lichvar and McColley 2008) as these two regions—the WMVC and the Arid West—are interspersed with one another. Best professional judgment is required to determine which manual is most appropriate for any given location within these two regions. The technical guidance presented here aims to provide an informed and consistent approach to OHWM delineation within the WMVC Region; however, OHWM delineation is not a precise practice. The OHWM can take on a variety of appearances and characteristics and may change over time due to natural or anthropogenic causes. Best professional judgment and consideration of the unique characteristics of each project site are always required.

A hybrid machine learning model to predict and visualize nitrate concentration throughout the Central Valley aquifer, California, USA

Science of the Total Environment (Elsevier) | June 9th, 2017

Intense demand for water in the Central Valley of California and related increases in groundwater nitrate concentration threaten the sustainability of the groundwater res

Intense demand for water in the Central Valley of California and related increases in groundwater nitrate concentration threaten the sustainability of the groundwater resource. To assess contamination risk in the region, we developed a hybrid, non-linear, machine learning model within a statistical learning framework to predict nitrate contamination of groundwater to depths of approximately 500m below ground surface. A database of 145 predictor variables representing well characteristics, historical and current field and landscape-scale nitrogen mass balances, historical and current land use, oxidation/reduction conditions, groundwater flow, climate, soil characteristics, depth to groundwater, and groundwater age were assigned to over 6000 private supply and public supply wells measured previously for nitrate and located throughout the study area. The boosted regression tree (BRT) method was used to screen and rank variables to predict nitrate concentration at the depths of domestic and public well supplies. The novel approach included as predictor variables outputs from existing physically based models of the Central Valley. The top five most important predictor variables included two oxidation/reduction variables (probability of manganese concentration to exceed 50 ppb and probability of dissolved oxygen concentration to be below 0.5 ppm), field-scale adjusted unsaturated zone nitrogen input for the 1975 time period, average difference between precipitation and evapotranspiration during the years 1971–2000, and 1992 total landscape nitrogen input. Twenty-five variables were selected for the final model for log-transformed nitrate. In general, increasing probability of anoxic conditions and increasing precipitation relative to potential evapotranspiration had a corresponding decrease in nitrate concentration predictions. Conversely, increasing 1975 unsaturated zone nitrogen leaching flux and 1992 total landscape nitrogen input had an increasing relative impact on nitrate predictions. Three-dimensional visualization indicates that nitrate predictions depend on the probability of anoxic conditions and other factors, and that nitrate predictions generally decreased with increasing groundwater age.

A Menu of Fire Response Water Quality Monitoring Options and Recommendations for Water Year 2019 and Beyond

San Francisco Estuary Institute (SFEI) | July 2nd, 2018

In October 2017, the Tubbs Fire and the Nuns Fire burned 93,400 acres of the Mark West Creek and Santa Rosa Creek watersheds, killing 22 people, and incinerating approxim

In October 2017, the Tubbs Fire and the Nuns Fire burned 93,400 acres of the Mark West Creek and Santa Rosa Creek watersheds, killing 22 people, and incinerating approximately 7,000 structures. After the fires, many agencies worked together to deploy water and sediment related best management practices (BMPs) in the burn area (e.g., waddles, emergency hydroseeding, and filter systems on storm drains) and worked on removing contaminated debris and soil from burned properties. The City of Santa Rosa conducted water quality sampling to verify that the BMPs were working. Water quality samples were collected at selected sites before and after flow interacted with the BMP; the City was generally pleased with the results. Subsequently, the North Coast Regional Water Quality Control Board (Water Board) developed a preliminary monitoring design for WY 2018 to measure potential water quality impacts of the fires in relation to beneficial uses. Selected streams were sampled for parameters that could be compared to regulatory water quality criteria. The attachment contains a summary of the results for WY 2018. Based on this initial dataset, the apparent early success of the BMP program, and the soil clean-ups that have occurred, the focus going forward should be on monitoring larger-scale and longer-term impacts. This document outlines monitoring options for consideration for WY 2019 and beyond for four categories: Water Chemistry, Hydromodification, Geomorphic Response, and Ecology. 

A multi-isotope (B, Sr, O, H, and C) and age dating (3H–3He and14C) study of groundwater from Salinas Valley, California: Hydrochemistry, dynamics, and contamination processes

American Geophysical Union (AGU) | January 31st, 2002

The chemical and isotope (11B/10B, 87Sr/86Sr, 18O/16O, 2H/H, 13C/12C, 14C, and 3He/3H) compositions of groundwater from the upper aquifer system of the Salinas Valley in

The chemical and isotope (11B/10B, 87Sr/86Sr, 18O/16O, 2H/H, 13C/12C, 14C, and 3He/3H) compositions of groundwater from the upper aquifer system of the Salinas Valley in coastal central California were investigated in order to delineate the origin and processes of groundwater contamination in this complex system. The Salinas Valley has a relatively deep, confined ‘‘400- foot’’ aquifer, overlain by a ‘‘180-foot’’ aquifer and a shallower perched aquifer, all made up of alluvial sand, gravel and clay deposits. Groundwater from the aquifers have different 14C ages: fossil (14C = 21.3 percent modern carbon (pmc) for the 400-foot aquifer and modern (14C = 72.2–98.2 pmc) for the 180-foot aquifer. Fresh groundwater in all aquifers is recharged naturally and artificially through the Salinas River. The two modes of recharge can be distinguished chemically.We identified several different saline components with distinguishable chemical and isotopic fingerprints. Saltwater intrusion in the northern basin has C1 concentrations up to 1700 mg/L, a Na/Cl ratio less than seawater, a marine Br/Cl ratio, a Ca/Cl ratio greater than seawater, d11B between +17 and +38% and 87Sr/86Sr between 0.7088 and 0.7096. Excess dissolved Ca, relative to the expected concentration for simple dilution of seawater, correlates with 87Sr/86Sr ratios, suggesting base exchange reaction with clay materials. (2) Agriculture return flow is high inNO3 and SO4, with a 87Sr/86Sr = 0.7082,d11B = 19% and d13C between 23 and 17%. The 3H–3He ages (5–17 years) and 14C data suggest vertical infiltration rates of irrigation water of 3–10 m/yr. (3) Nonmarine saline water in the southern part of the valley has high total dissolved solids up to 3800 mg/L, high SO4, Na/Cl ratio >1, d11B between +24 and +30%, and 87Sr/86Sr = 0.70852. This groundwater may have acquired its geochemical signature from leaching of sedimentary rocks associated with the Coast Range marine deposits of Mesozoic to early Cenozoic age. The combination of different geochemical and isotopic fingerprints enables us to delineate the impact of salt sources in different areas of the valley and to reconstruct the origin of the SO4-enriched NO3-depleted saline plume that is located west of the city of Salinas. We suggest that the latter is derived from a mixture of different natural saline waters rather than from anthropogenic contamination.

A multi-scale approach for identification of potential pesticide use sites impacting vernal pool critical habitat in California

Science of the Total Environment (Elsevier) | October 17th, 2022

Spatially explicit ecological risk assessment (ERA) requires estimating the overlap between chemical and receptor distribution to evaluate the potential impacts of exposu

Spatially explicit ecological risk assessment (ERA) requires estimating the overlap between chemical and receptor distribution to evaluate the potential impacts of exposure on nontarget organisms. Pesticide use estimation at field level is prone to error due to inconsistencies between ground-reporting and geospatial data coverage; attempts to rectify these inconsistencies have been limited in approach and rarely scaled to multiple crop types. We built upon a previously developed Bayesian approach to combine multiple crop types for a probabilistic determination of field-crop assignments and to examine co-occurrence of critical vernal pool habitats and bifenthrin application within a 5-county area in California (Madera, Merced, Sacramento, San Joaquin, and Stanislaus counties). We incorporated a multi-scale repeated sampling approach with an area constraint to improve the delineation of field boundaries and better capture variability in crop assignments and rotation schemes. After comparing the accuracy of the spatial probabilistic approach to USDA Census of Agriculture crop acreage data, we found our approach allows more specificity in the combination of crop types represented by the potential application area and improves acreage estimates when compared to traditional deterministic approaches. In addition, our multi-scale sampling scheme improved estimates of bifenthrin acreage variability for co-occurrence analysis and allowed for estimates of crop rotations that were previously uncaptured. Our approach could be leveraged for more realistic, spatially resolved exposure and effects models both in and outside of California.

A pesticide and iPSC dopaminergic neuron screen identifies and classifies Parkinson-relevant pesticides

Nature Portfolio (Springer Nature) | May 16th, 2023

Parkinson’s disease (PD) is a complex neurodegenerative disease with etiology rooted in genetic vulnerability and environmental factors. Here we combine quantitative ep

Parkinson’s disease (PD) is a complex neurodegenerative disease with etiology rooted in genetic vulnerability and environmental factors. Here we combine quantitative epidemiologic study of pesticide exposures and PD with toxicity screening in dopaminergic neurons derived from PD patient induced pluripotent stem cells (iPSCs) to identify Parkinson’s-relevant pesticides. Agricultural records enable investigation of 288 specific pesticides and PD risk in a comprehensive, pesticide-wide association study. We associate long-term exposure to 53 pesticides with PD and identify co-exposure profiles. We then employ a live-cell imaging screening paradigm exposing dopaminergic neurons to 39 PD-associated pesticides. We find that 10 pesticides are directly toxic to these neurons. Further, we analyze pesticides typically used in combinations in cotton farming, demonstrating that co-exposures result in greater toxicity than any single pesticide. We find trifluralin is a driver of toxicity to dopaminergic neurons and leads to mitochondrial dysfunction. Our paradigm may prove useful to mechanistically dissect pesticide exposures implicated in PD risk and guide agricultural policy.

A Practitioner’s Guide to Instream Flow Transactions in California

American Rivers | March 1st, 2016

The purpose of this guide is to help water right holders –and those assisting them – understand their options for keeping water instream in California. Th

The purpose of this guide is to help water right holders –and those assisting them – understand their options for keeping water instream in California. This guide briefly describes some of the most common types of instream flow transactions (i.e., methods for restoring flow for environmental purposes), and discusses in detail how to navigate the process of completing an instream flow dedication by changing a water right, as permitted by Water Code Section 1707. The intended audience for this document includes both water rights holders and practitioners, such as staff for land trusts, water trusts, Resource Conservation Districts (RCDs), and other organizations. This guide focuses on instream dedications via the change petition process administered by the State Water Resources Control Board (State Water Board). Other publications – for example, the Trust for Public Land’s Water Acquisition Handbook (2003) – provide a more general overview of acquiring water for environmental purposes in California. This guide will provide a description of the change petition process, and offer advice on how to navigate, troubleshoot, and work in partnership with the State Water Board and other natural resource agencies to complete an instream flow dedication.

A Preliminary Study of the Effects of Water Circulation in the San Francisco Bay Estuary

U.S. Geological Survey (USGS) | July 15th, 1970