Gut Contents Analysis of Four Fish Species Collected in the San Leandro Bay RMP PCB Study in August 2016

San Francisco Estuary Institute (SFEI) | November 7th, 2018

In support of PCB modeling for San Leandro Bay, a Priority Margin Unit (PMU) for PCB load reduction in the estuary, fish samples of four species (topsmelt, shiner perch,

In support of PCB modeling for San Leandro Bay, a Priority Margin Unit (PMU) for PCB load reduction in the estuary, fish samples of four species (topsmelt, shiner perch, white croaker, and northern anchovy ) were obtained in August 2016 for both tissue analysis and examination of gut contents. The bay was sampled at eight locations, with a repeated sampling at one location (Airport Lagoon) for one species (topsmelt). Fish were measured, weighed, and dissected, and their gut contents examined microscopically. Topsmelt (9 samples, 188 specimens) had the greatest variety of food items, with gammarid amphipods and chain diatoms predominating. Some topsmelt, especially larger individuals, consumed macroalgae as a major dietary component. Two samples at two sites for shiner perch (20 fish each) had contents composed of close to 50% gammarids at both sites, but differed in proportions of bivalves and polychaetes among the important food items. The one sample of white croaker had consumed mostly gammarids, with fish and polychaetes ranking next in importance. A single sample of northern anchovy (20 fish analyzed) differed radically from the other species in consuming mainly a diatom that appears to have been filtered from the water column. Trace amounts of plastic fiber were seen in all species except shiner perch. All exposure to sediment appeared to have occurred in the top 2 cm of the sediment column, or as contact with flocculent material on plants or hard substrates, or even in the water column, as some fine sand grains were seen in all fish, even anchovy. There was no conclusive evidence of site-specific foraging (site fidelity). The best spatial coverage was for topsmelt, and these fish appear to have fed opportunistically, with some evidence for having fed outside San Leandro Bay.

Habitat Restoration in the Sacramento-San Joaquin Delta and Suisun Marsh: A Review of Science Programs

Delta Stewardship Council (Delta Council) | April 25th, 2013

Current plans call for the restoration of tens of thousands of acres of mainly intertidal habitat in the Sacramento-San Joaquin Delta and Suisun Marsh. Restoration on thi

Current plans call for the restoration of tens of thousands of acres of mainly intertidal habitat in the Sacramento-San Joaquin Delta and Suisun Marsh. Restoration on this scale presents both formidable challenges and tremendous opportunities. As part of its legislatively mandated oversight of Delta science programs, the Delta Independent Science Board reviewed these habitat restoration efforts. We held discussions with individuals from state and federal agencies, NGOs, consulting firms, and universities. We were impressed by their dedication, enthusiasm, and knowledge, as well as by the scientific and institutional challenges they face. Our findings and observations about the restoration efforts are grouped under a series of criteria for a successful restoration program. In such a program: the goals are clearly articulated; the design incorporates spatial and temporal context, adaptive management and flexibility, and monitoring; modeling is used in design and evaluation; planning and implementation are coordinated among projects; the necessary scientific expertise is available; and stakeholders are involved early and often. Our findings and recommendations agree with those reached independently by National Research Council (NRC) panels. For convenience, as in the Delta Plan, we use "the Delta" to encompass both the statutory Delta and Suisun Marsh.

Habitat-Specific Foraging by Striped Bass (Morone saxatilis) in the San Francisco Estuary, California: Implications for Tidal Restoration

University of California, Davis (UC Davis) | December 1st, 2022

Non-native predatory fish strongly affect aquatic communities, and anthropogenic habitat alterations can exacerbate their effects. Loss of natural habitat, and restorati

Non-native predatory fish strongly affect aquatic communities, and anthropogenic habitat alterations can exacerbate their effects. Loss of natural habitat, and restoration actions that reverse habitat loss, can modify relationships between non-native predators and prey. Predicting how these relationships will change is often difficult because insufficient information exists on the habitat-specific feeding ecology of non-native predators. To address this information gap, we examined diets of non-native Striped Bass (Morone saxatilis; 63 to 671 mm standard length; estimated age 1 to 5 yrs) in the San Francisco Estuary during spring and summer in three habitat types—marsh, shoal, and channel—with the marsh habitat type serving as a model for ongoing and future restoration. Based on a preyspecific index of relative importance, Striped Bass diets were dominated by macroinvertebrates in spring and summer (amphipods in spring, decapods and isopods in summer). In spring, diets were relatively consistent across habitats. In summer, marsh diets were dominated by sphaeromatid isopods and shoal/channel diets by idoteid amphipods and decapods. Striped Bass consumed a variety of native and non-native fishes, primarily Prickly Sculpin (Cottus asper) and Gobiidae. The highest importance of fish prey was in the marsh in spring (~ 40% prey weight), and fish prey comprised less than 25% prey weight in all other season/habitat combinations. Linear discriminant analyses suggested that marsh foraging was prevalent in Striped Bass collected in other habitats, mostly because of the predominance of marsh-associated invertebrates found in the stomachs of individual Striped Bass collected outside the marsh. Striped Bass diets differ across habitats, with marsh foraging important to Striped Bass regardless of collection location. This information can be used to forecast the potential utilization of restored habitats by this non-native piscivore.

Hacienda Avenue Bio-Infiltration Basins

San Francisco Estuary Institute (SFEI) | July 1st, 2016

Harnessing California's Waters: The Completion of the First Stage of the Pit River Power Project

Scientific American | April 1st, 1923

California is now the greatest hydro-electric power State in the Union. Over one-fifth of all the electric power generated by American water is produced in Californi

California is now the greatest hydro-electric power State in the Union. Over one-fifth of all the electric power generated by American water is produced in California. Last year, according to figures announced by Engineer H. D. McGlashan of the water resources branch of the United States Geological Survey, 3,227,262,000 kilowatt-hours were produced by water power in California. New York, which comes next with 14.72 per cent of the total. made 2,203,564,000 kilowatthours. On Saturday, September 30, 1922, an important step in California's electrification was carried out. On this date the constantly flowing waters of the Fall River were diverted through a tunnel and dropped 454 feet through steel penstocks to the Pit River Power Plant No. 1 .

HEC-HMS Models for the Sacramento and San Joaquin River Basins Comprehensive Study

U.S. Army Corps of Engineers (USACE) | August 1st, 2001

Due to several large and damaging flood events on the Sacramento and San Joaquin Rivers (California) during the 1980s and 1990s, the U.S. House of Representatives

Due to several large and damaging flood events on the Sacramento and San Joaquin Rivers (California) during the 1980s and 1990s, the U.S. House of Representatives directed the Sacramento District to develop comprehensive plans for flood control for the two rivers and to develop hydrologic and hydraulic models of the river systems. The models will be used to provide better forecasts and evaluations of flood damage reduction alternatives. Additionally, the model results will be used as input for reservoir simulation models. The Sacramento River Basin and the San Joaquin River/Tulare Lake Bed Basins comprise nearly 60,000 square miles, drain California’s Central Valley floor and receive much of their runoff from the Sierra Nevada mountain range. Developing hydrologic models for the tributary basins (which included extremely variable terrain) within a ten month time period was a formidable task. The District contacted the Hydrologic Engineering Center (HEC) to assist with the development of these models. HEC used the Hydrologic Modeling System program, HEC-HMS, and introduced the HEC-GeoHMS grid-based technology to perform the hydrologic study. GeoHMS is an ArcView® extension that provides automated subbasin delineation methods and calculates many physical characteristics used for estimation of hydrologic parameters. HEC developed and calibrated 33 individual HEC-HMS models for the major tributaries and portions of the valley floors of the Sacramento River Basin and the San Joaquin River / Tulare Lake Bed Basins. GeoHMS was used to delineate the individual river basins, perform initial subbasin delineation and develop the physical characteristics for the subbasins. Tools within GeoHMS allowed the modelers to iteratively redelineate their subbasins, as appropriate, to meet project needs. Keeping the modeling effort consistent was critical to the success of the study. To ensure this consistency of procedures and results, HEC developed modeling guidelines that each of the 11 modeling teams followed. Once the grid-based HEC-HMS models were developed, HEC contracted with the Corps’ Cold Regions Research and Engineering Laboratory (CRREL) to perform a snowmelt study for the watersheds. HEC provided a gridded precipitation file (4 km2) to CRREL. Through the use of their Distributed Snow Process Model (DSPM), CRREL then provided a gridded snowmelt/ precipitation file to HEC. DSPM computes snowmelt and rainfall depths at the soil surface on a grid-cell basis. This data is used directly by HEC-HMS as precipitation on the watershed. The ModClark rainfall to runoff transformation was used to compute the subbasin hydrographs. HEC-HMS parameter optimization models were developed at hourly flow gages for the unregulated headwater streams. The runoff parameter optimization models allowed the modelers to develop the runoff parameters necessary for the regression analysis. A number of physical characteristics were evaluated for correlation with variations in Clark’s time of concentration, TC, for the optimization models. The results of the regression analysis allowed the modelers to populate the ungaged subbasins with appropriate unit hydrograph parameters. Approximately 200 hourly flow gages and 83 reservoirs were considered in calibrating the models. The 33 individual basin models were then given to the Sacramento District.

High Resolution Measurement of Levee Subsidence Related to Energy Infrastructure in the Sacramento-San Joaquin Delta

California Energy Commission (CEC) | August 31st, 2018

We assess flood overtopping potential (when flood water elevation exceeds levee elevation) to the levees surrounding the islands in the interior of California's S

We assess flood overtopping potential (when flood water elevation exceeds levee elevation) to the levees surrounding the islands in the interior of California's Sacramento-San Joaquin Delta. Because critical natural gas infrastructure is susceptible to overtopping-related disruption, we focus our analysis on regions that are crossed by the network of the state's natural gas pipelines. We use laser scanning data collected during 2015-2016 to estimate subsidence rates since 2007 when an earlier, Delta-wide, airborne laser-scanning topographic dataset was collected. For each levee studied, we combine: (1) the estimated subsidence rate, (2) a conservative range of sea-level rise projections and, (3) an estimate of the 100-year freshwater flood stage to project the time until exceedance of the federal levee height standard (PL84-99). We find that subsidence rates vary from 0-5 centimeters per year (cm/yr) with mean values of ~1-2 cm/year. Local gradients in subsidence can be on the order of cms/yr over a distance of 10s of meters parallel to the levee crests, and these types of gradients are present near some pipeline crossings. The Sherman Island region has subsidence rates close to a factor of 2 greater than other areas considered. Our projections indicate general ranges of exceedance date from about 2060 (fast sea-level rise scenario) to 2080 (slow sea-level rise scenario) with some places projected to exceed threshold by about 2050.

Historical Fresh Water and Salinity Conditions in the Western Sacramento-San Joaquin Delta and Suisun Bay

Contra Costa Water District (CCWD) | February 23rd, 2010

The watershed of the Sacramento–San Joaquin Delta (Delta) provides drinking water to more than 23 million Californians as well as irrigation water for millions of acres

The watershed of the Sacramento–San Joaquin Delta (Delta) provides drinking water to more than 23 million Californians as well as irrigation water for millions of acres of agriculture in the Central Valley. The Delta itself is a complex estuarine ecosystem, with populations of many native species now in serious decline. The Delta estuary as we know it began to form about 6,000 years ago, following the end of the last ice age. Because the estuary is connected to the Pacific Ocean through San Francisco Bay, seawater intrusion causes the salinity of Suisun Bay and the Delta to vary depending on hydrological conditions. This seawater intrusion into the Delta affects estuarine species as well as drinking water and irrigation water supplies. Successful restoration of the Delta ecosystem requires an understanding of the conditions under which native species evolved. Contra Costa Water District’s report on “Historical Fresh Water and Salinity Conditions in the Western Sacramento-San Joaquin Delta and Suisun Bay” presents a detailed review of more than 100 years of studies, monitoring data, scientific reports, and modeling analyses that establish an historical record of the salinity conditions in the Western Delta and Suisun Bay.

History of the Delta Division, Central Valley Project

U.S. Bureau of Reclamation (USBR) | October 1st, 1994

The Delta Division of the Central Valley Project (CVP) acts as the hub around which the CVP revolves. The Delta Division contains the facilities that transfer water from

The Delta Division of the Central Valley Project (CVP) acts as the hub around which the CVP revolves. The Delta Division contains the facilities that transfer water from the Sacramento River, to bolster irrigation supplies to thirsty lands formerly dependent on water from the San Joaquin River. In time, the Delta Division became the hub for controversy revolving around the Central Valley Project. This document recounts the history of the Delta Division.  It was produced by the Bureau of Reclamation.

Holocene paleoclimate records from a large California estuarine system and its watershed region: linking watershed climate and bay conditions

Quaternary Science Reviews (Elsevier) | July 10th, 2006

The San Francisco Bay-Delta system includes a watershed that covers a large area of California and provides water to two-thirds of the State's population. Climate

The San Francisco Bay-Delta system includes a watershed that covers a large area of California and provides water to two-thirds of the State's population. Climate over the estuary and its watershed in the dry summer months is controlled by the subtropical high which dominates and deflects storms from California. The subtropical high weakens and migrates south as the Aleutian Low strengthens, bringing wet winter storms to the region. Paleoclimatic records from the Bay and its greater watershed, spanning the Holocene, are reviewed here in order to better understand natural variations of precipitation and runoff and the linkages between those variations and the salinity and ecosystems of the estuary. To better understand regional-scale climate patterns, paleoclimate records from coastal California and the Great Basin are also considered. Large fluctuations in climate have occurred during the period of interest, and there is generally good agreement between the paleoclimate records from different regions. Early Holocene climate throughout California was marked by rising temperatures and reduced moisture as seen in fire records from the watershed. This warmth and aridity peaked about 5000–7000 years ago and was followed by a cooling trend, with variable moisture conditions. The Estuary formed relatively rapidly in response to a high rate of sea level rise that dominated the Holocene until about 6000 years ago, and the subsequent reduced rate of inundation allowed vast tidal marshes to form along the edges of the estuary, which have since been recording changes in environmental conditions. The impacts of changing regional climate patterns are experienced in the San Francisco Bay-Delta system, as altered fresh water flows result in altered estuary salinity. For example, approximately 3800 cal yr B.P., records from throughout the state indicate a cool, moist period, and Bay salinity was reduced; this period was followed by a general drying trend throughout California over the last two millennia, punctuated by decades to centuries-long droughts and brief, extremely wet events. In particular, during the period ca. 1000–800 cal yr B.P. (A.D. 950–1150) conditions seem to have been unusually dry in many parts of the watershed, reducing the fresh water flows to the estuary, and shifting tidal marsh plant assemblages toward less diverse, but more salt-tolerant plants. In contrast, the Little Ice Age (ca. 550–200 cal yr B.P.) brought unusually cool and wet conditions to much of the watershed, and lowered salinity in the Bay. Many reconstructions suggest that notably stable conditions have prevailed over the instrumental period, i.e., after ca. A.D. 1850, even including the severe, short-term anomalies experienced during this period. Interdecadal variability is common in many of the records, with timescales of ca. 55, 70, 90, 100, 150, and 200 years.