The Use of Smolt Survival Estimates to Quantify the Effects of Habitat Changes on Salmonid Stocks in the Sacramento-San Joaquin Rivers, California

Canada Department of Fisheries and Oceans (DFO) | July 1st, 1989

Tools for managing hydrologic alteration on a regional scale II: Setting targets to protect stream health

Freshwater Biology (Wiley) | January 15th, 2018

1. Widespread hydrologic alteration creates a need for tools to assess ecological impacts to streams that can be applied across large geographic scales. A regional framew

1. Widespread hydrologic alteration creates a need for tools to assess ecological impacts to streams that can be applied across large geographic scales. A regional framework for biologically based flow management can help catchment managers prioritise streams for protection, evaluate impacts of disturbance or interventions and provide a starting point for causal assessment in degraded streams. However, lack of flow data limit the ability to assess hydrologic conditions across a region. 2. Hydrologic models can address this problem. Regionally calibrated hydrologic models were used to estimate current and reference flows at 572 bioassessment sites in southern and central coastal California. Flow alteration was characterised as the difference in 39 flow metrics calculated from simulations of present‐day and reference flow time‐series, calculated under up to four precipitation conditions. 3. Biological condition was assessed with the California Stream Condition Index (CSCI) and its components. Logistic regressions were used to predict the likelihood of high scores (i.e. ≥10th percentile of the CSCI reference calibration data). Statistically significant relationships between increasing severity of hydrologic alteration and decreasing biological condition were used to set thresholds that reflected tolerance for risk of a stakeholder advisory group. 4. An index of hydrologic alteration was created by selecting flow metrics based on their importance for predicting biological response variables in boosted regression tree models. Metrics were selected in the order of decreasing importance, and no more than two metrics per metric class were selected (i.e. duration, frequency, magnitude, timing and variability). Seven metrics were selected: HighDur (duration of high‐flow events), HighNum (# of high‐flow events), NoDisturb (duration between high‐ or low‐flow events), MaxMonthQ (maximum monthly discharge), Q99 (99th percentile of daily streamflow), QmaxIDR (interdecile range of annual maxima) and RBI (Richards–Baker Index). 5. Applying the index to data from a probabilistic survey, 34% of stream‐miles in southern California were estimated to be hydrologically altered. One of four management priorities were assigned to each site based on biological condition and hydrologic status: protection (healthy and unaltered, 52% of stream‐miles), monitoring (healthy but altered 4%), evaluation of flow management (unhealthy and altered, 30%) and evaluation of other management (unhealthy but unaltered, 14%). 6. Regionally derived biologically based targets for flow alteration allow catchment managers to prioritise activities and conduct screenings for causal assessments across large spatial scales. Furthermore, regional tools pave the way for incorporation of hydrologic management in policies and catchment planning designed to support biological integrity in streams. Development of regional tools should be a priority where hydrologic alteration is pervasive or expected to increase in response to climate change or urbanisation.

Toxicological assessment of potable reuse and conventional drinking waters

Nature Portfolio (Springer Nature) | October 27th, 2022

Potable reuse, the process of treating wastewater to drinkable standards, offers a reliable and sustainable solution to cities and regions facing shortages of clean water

Potable reuse, the process of treating wastewater to drinkable standards, offers a reliable and sustainable solution to cities and regions facing shortages of clean water. However, implementation is hindered by perceptions of poor water quality and potential health threats. Herein, we compare water samples from potable reuse systems with conventional drinking waters based on the analysis of Chinese hamster ovary cell cytotoxicity contributed by disinfection by-products (DBPs) and sewage-derived anthropogenic contaminants. In all cases, the cytotoxicity of potable reuse waters is lower than that of drinking waters derived from surface waters. The median contribution to total cytotoxicity was 0.2% for regulated DBPs and 16% for the unregulated DBPs of current research interest. Nonvolatile, uncharacterized DBPs and anthropogenic contaminants accounted for 83% of total cytotoxicity. Potable reuse waters treated by reverse osmosis are not more cytotoxic than groundwaters. Even in the absence of reverse osmosis, reuse waters are less cytotoxic than surface drinking waters. Our results suggest that potable reuse can provide a safe, energy-efficient and cost-effective alternative water supply.

Tracking Organic Matter in Delta Drinking Water

CALFED | April 1st, 2008

Trapping of Suspended Sediment by Submerged Aquatic Vegetation in a Tidal Freshwater Region: Field Observations and Long-Term Trends

Estuaries and Coasts (Springer) | July 14th, 2020

Widespread invasion by non-native, submerged aquatic vegetation (SAV) may modify the sediment budget of an estuary, reducing the availability of inorganic sediment requir

Widespread invasion by non-native, submerged aquatic vegetation (SAV) may modify the sediment budget of an estuary, reducing the availability of inorganic sediment required by marshes to maintain their position in the tidal frame. The instantaneous trapping rate of suspended sediment in SAV patches in an estuary has not previously been quantified via field observations. In this study, flows of water and suspended sediment through patches of invasive SAV were measured at three tidally forced, freshwater sites, all located within the Sacramento-San Joaquin Delta in California. An acoustic Doppler current profiler deployed from a roving vessel provided velocity and backscatter data used to quantify fluxes of both water and suspended sediment. Sediment trapping efficiency, defined as instantaneous net trapped flux divided by incident flux, was positive in 24 of 29 cases, averaging + 5%. Coupled with 3 years of measured sediment flux data at one site, this suggests that trapping averages 3.7 kg m−2 year−1. This estimate compares favorably with the mean mass accumulation rate of 3.8 kg m−2 year−1 estimated from dated sediment cores collected at the study sites. Long-term measurements made upstream reveal a strong negative trend (− 1.8% year−1) in suspended sediment concentration, and intra-annual changes in both suspended sediment concentration and percent fines. The large footprint and high spatial density of invasive SAV coupled with declining sediment supply are diminishing downstream suspended sediment concentrations, potentially reducing the resiliency of marshes in the Delta and lower estuary to future sea-level rise.

Trend analysis of ground-water levels and spring discharge in the Yucca Mountain region, Nevada and California, 1960–2000

U.S. Geological Survey (USGS) | July 1st, 2002

Tritium as an indicator of modern, mixed, and premodern groundwater age

U.S. Geological Survey (USGS) | September 4th, 2019

Categorical classification of groundwater age is often used for the assessment and understanding of groundwater resources. This report presents a tritium-based age classi

Categorical classification of groundwater age is often used for the assessment and understanding of groundwater resources. This report presents a tritium-based age classification system for the conterminous United States based on tritium (3H) thresholds that vary in space and time: modern (recharged in 1953 or later), if the measured value is larger than an upper threshold; premodern (recharged prior to 1953) if the measured value is smaller than a lower threshold; or mixed if the measured value is between the two thresholds. Inclusion of spatially varying thresholds, rather than a single threshold, accounts for the observed systematic variation in 3H deposition across the United States. Inclusion of time-varying thresholds, rather than a single threshold, accounts for the date of sampling given the radioactive decay of 3H. The efficacy of the tritium-based age classification system was evaluated at national and regional scales. The system was evaluated at a national scale by classifying samples from 1,788 public-supply wells distributed across 19 principal aquifers and comparing those results with expectations based on hydrogeologic principles. The regional-scale data are from five paired networks of shallow and deep wells (287 wells). As expected, modern groundwater is more prevalent in shallow wells than in deeper wells, in fractured-rock and carbonate aquifers as compared to clastic aquifers, in unconfined areas as compared to confined areas, and in humid climates as compared to arid climates. The results from a tritium-based age classification system compared favorably with the results of 14 previous studies of groundwater ages that used different age tracers and analytical methods. The wells and samples from the Cambrian-Ordovician aquifer that had been analyzed using a more complex multi-tracer analysis were also analyzed using the tritium-based age classification system, and there was a close match between the two methods. The results from these various studies suggest that the tritium-based age classification system may be informative as a screening tool prior to selecting more expensive and complex age-dating tracers and methods, or to provide an explanatory variable for other water-quality data where more complex methods or tracers are not available. This work improves on previous groundwater age classification using 3H by developing methods that (1) determine 3H thresholds for groundwater recharged in 1953 or later that minimize the misclassification of modern samples as mixed; (2) determine a pre-1953 threshold to estimate premodern background concentrations; and (3) add a mixed category to classify samples that are clearly neither entirely modern nor entirely premodern. As with any tritium-based approach, it can fail when the 3H record in precipitation does not accurately reflect the record of 3H in recharge

Unintended consequences of water conservation on the use of treated municipal wastewater

Nature Portfolio (Springer Nature) | May 11th, 2020

Municipal water managers are intensifying efforts to reduce urban water use and increase the reliability of local water supplies to combat rising water scarcity and droug

Municipal water managers are intensifying efforts to reduce urban water use and increase the reliability of local water supplies to combat rising water scarcity and drought. Incentivizing increases in water-use efficiency and mandating conservation are two strategies to rein in demand. Concurrently, local water supplies are being augmented through investments in reclaiming and treating municipal wastewater. Although reducing urban water consumption is necessary to deal with population growth and a more variable climate, it does come at a cost. In particular, cutting back on indoor water consumption impacts the generation and quality of wastewater, which can have widespread and underappreciated consequences on human society and the environment. Here, to quantify these impacts, we tracked monthly effluent flow, salinity levels and the properties of 34 wastewater treatment plants throughout Southern California from 2013 to 2017—a period that included extreme drought and abundant precipitation. Our analysis demonstrates that conservation measures significantly reduced effluent flow and increased effluent salinity (P value ≤ 0.05). Our findings further highlight the need for policymakers to recognize the interdependencies and complexities within a water system.

Use of Set Blanks in Reporting Pesticide Results at the U.S. Geological Survey National Water Quality Laboratory, 2001–15

U.S. Geological Survey (USGS) | July 11th, 2019

Pesticide results from the U.S. Geological Survey (USGS) National Water Quality Laboratory (NWQL) are used for water-quality assessments by many agencies and organization

Pesticide results from the U.S. Geological Survey (USGS) National Water Quality Laboratory (NWQL) are used for water-quality assessments by many agencies and organizations. The USGS is committed to providing data of the highest possible quality to the consumers of its data. A cooperator’s inquiries about specific pesticide detections in water revealed potential laboratory contamination issues for some results. Consequently, the USGS conducted an extensive evaluation of potential low-level contamination related to processing or analysis of water-quality samples at NWQL for 21 pesticide compounds of interest to the cooperator. This is the most comprehensive study of NWQL pesticide quality-control (QC) results to date.

Use of the SmeltCam as an Efficient Fish-Sampling Alternative Within the San Francisco Estuary

University of California, Davis (UC Davis) | June 1st, 2021

Resource managers often rely on long-term monitoring surveys to detect trends in biological data. However, no survey gear is 100% efficient, and many sources of bias can

Resource managers often rely on long-term monitoring surveys to detect trends in biological data. However, no survey gear is 100% efficient, and many sources of bias can be responsible for detecting or not detecting biological trends. The SmeltCam is an imaging apparatus developed as a potential sampling alternative to long-term trawling gear surveys within the San Francisco Estuary, California, to reduce handling stress on sensitive species like the Delta Smelt (Hypomesus transpacificus). Although believed to be a reliable alternative to closed cod-end trawling surveys, no formal test of sampling efficiency has been implemented using the SmeltCam. We used a paired deployment of the SmeltCam and a conventional closed cod-end trawl within the Napa River and San Pablo Bay, a Bayesian binomial N-mixture model, and data simulations to determine the sampling efficiency of both deployed gear types to capture a Delta Smelt surrogate (Northern Anchovy, Engraulis mordax) and to test potential bias in our modeling framework. We found that retention efficiency—a component of detection efficiency that estimates the probability a fish is retained by the gear, conditional on gear contact—was slightly higher using the SmeltCam (mean = 0.58) than the conventional trawl (mean = 0.47, Probability SmeltCam retention efficiency > trawl retention efficiency = 94%). We also found turbidity did not affect the SmeltCam’s retention efficiency, although total fish density during an individual tow improved the trawl’s retention efficiency. Simulations also showed the binomial model was accurate when model assumptions were met. Collectively, our results suggest the SmeltCam to be a reliable alternative to sampling with conventional trawling gear, but future tests are needed to confirm whether the SmeltCam is as reliable when applied to taxa other than Northern Anchovy over a greater range of conditions.