Groundwater and Stream Interaction in California's Central Valley: Insights for Sustainable Groundwater Management

Nature Conservancy | June 16th, 2016

Sustainable water management requires ensuring ecosystem water needs are met in balance with water needs for people. The Nature Conservancy (TNC) is working across Califo

Sustainable water management requires ensuring ecosystem water needs are met in balance with water needs for people. The Nature Conservancy (TNC) is working across California to demonstrate how to achieve this balance in the context of integrated water management programs. Sustainable water management must also recognize that surface water and groundwater resources are interconnected and that proper management of these resources includes understanding this interaction and managing the resources accordingly. Management of groundwater and surface water systems in an integrated manner is impeded by California water law and policy, which has separate rules and regulations for managing groundwater and surface water resources. The Central Valley of California is the hub of the state’s water supply system. An extensive network of dams and canals supplies surface water to users within the Central Valley as well as to the San Francisco Bay Area, the Central Coast, and Southern California. Analysis of information collected in this study reveals that just within the Central Valley, agricultural and urban sectors use an average of 13 million acre-feet (MAF) of surface water and over 8 MAF of groundwater per year. Approximately 2 MAF of water is exported annually to areas outside the Central Valley. Because the availability of surface water supplies varies significantly from year to year, groundwater use also varies considerably on annual basis. In an average year, groundwater meets about 40% of the state’s water demand and up to 60% or more during droughts, when groundwater provides a water supply buffer against economic and environmental harm from water scarcity (DWR, 2014). In some areas, groundwater provides 100% of the supply, even in wetter years, and then is heavily pumped during drought. In other locations, where surface water supplies are reasonably abundant, groundwater use may be relatively light during wetter years, but more heavily pumped during drier years when surface water supplies are cut back. Accordingly, the impact of groundwater use is much more evident during dry years, and especially in drought conditions. A case in point is the drought condition of 2013-15. This drought is exerting significant stress on the state’s water supply. The surface water deliveries have been reduced dramatically, to near zero in many regions; therefore, agricultural and municipal water users in the Central Valley and other parts of the state that normally rely on surface water for much of their supplies, are now greatly increasing their use of groundwater to meet their needs. A 2014 UC Davis report indicates that expected increase in Central Valley groundwater pumping would be in the range of 20% to 25%, during the 2014 irrigation season. To the authors’ knowledge, there are no reports of actual estimates of increase in groundwater use for the recent drought conditions. The long-term increase in groundwater pumping and especially recent drought related increases in pumping would translate into significantly more adverse impacts on the surface water and stream systems, as well as groundwater dependent ecosystems. In addition, this increase in groundwater pumping could potentially result in more land subsidence throughout the valley. The drought has also affected the irrigated lands under cultivation. A November 2014 DWR publication “Public Update for Drought Response” 3 reported that based on NASA satellite imagery, approximately 700,000 acres of land were estimated idled between 2011 and 2014. Majority of these acreages idled are reported to be due to the drought conditions, although, some were also due to normal agronomic practices, crop markets, and other reasons. This report provides the results of a number of analyses and evaluations of Central Valley hydrologic conditions using the California Central Valley Groundwater-Surface Water Simulation Model (C2VSim). The study examines important hydrologic and operational characteristics and behaviors of the California’s Central Valley water system during the historical development in the Valley. In addition, the study presents results of model simulations conducted to assess potential impacts of several water management scenarios. The results of this study contribute significantly to the understanding of how management of groundwater and surface water are interrelated and will inform the development of more effective integrated water management in the Central Valley and throughout California. The interaction between groundwater and surface water resources has been evaluated and illustrated by many researchers. As early as 1941, Theis (1941) documented the hydraulic connection between stream and aquifer systems and quantitatively described the general behavior of stream-groundwater systems. Many others, including Glover & Balmer (1954) and Hantush (1965) built on Theis’ work, which demonstrated and confirmed the basic principles of hydraulic connection between stream and aquifer systems. In recent years, significant work has been conducted regarding regional impacts of groundwater pumping and operation on regional surface water systems. For example, the recent USGS study (Barlow & Leake, 2012) presents original findings of the stream-aquifer interaction in the context of sustainable groundwater management. In an effort to quantify the interaction between the groundwater and the surface water system, DWR’s C2VSim model was employed in this study. The C2VSim model was originally developed in 1990 for DWR, U. S. Bureau of Reclamation (USBR), and California State Water Resources Control Board (SWRCB) as the Central Valley Groundwater and Surface water Model (CVGSM) (James M. Montgomery Consulting Engineers, 1990a). Subsequently, the model was enhanced through numerous key applications, including the Central Valley Project Improvement Act – Programmatic Environmental Impact Statement (CVPIA-PEIS). In 2005, the CVGSM model was upgraded to the newly developed Integrated Water Flow Model (IWFM) platform, and was renamed the C2VSim model. The detailed features of the model are described and presented in Section 2 of this report. The C2VSim model is a leading Central Valley-wide integrated hydrologic model adopted by DWR and many other regional and state-wide agencies, as well as non-governmental organizations (NGOs) to evaluate various water management scenarios throughout the Valley. This report is organized in six sections: Section 1: Provides the background information and lays out the goals and objectives of this study. Section 2: Provides information on the status of C2VSim model, refinements made during this study, and assumptions on the modeling analysis. Section 3: Discusses simulation of the historical hydrologic conditions in the Central Valley. Section 4: Provides the assumptions and results of the existing baseline conditions, assuming that no changes to the facilities and their operations, as well as water management actions, take place over the course of a predetermined hydrologic condition. Section 5: Provides a description of three water management scenarios that may have major impacts on the future of surface water and groundwater interaction in Central Valley. Results of simulation of these management scenarios are presented and discussed in detail. Section 6: Provides conclusions from this study and a list of recommendations for future work.

Groundwater Contributions of Flow, Nitrate, and Dissolved Organic Carbon to the Lower San Joaquin River, California, 2006–08

U.S. Geological Survey (USGS) | October 8th, 2013

The influence of groundwater on surface-water quality in the San Joaquin River, California, was examined for a 59-mile reach from the confluence with Salt Slough to Verna

The influence of groundwater on surface-water quality in the San Joaquin River, California, was examined for a 59-mile reach from the confluence with Salt Slough to Vernalis. The primary objective of this study was to quantify the rate of groundwater discharged to the lower San Joaquin River and the contribution of nitrate and dissolved organic carbon concentrations to the river. Multiple lines of evidence from four independent approaches were used to characterize groundwater contributions of nitrogen and dissolved organic carbon. Monitoring wells (in-stream and bank wells), streambed synoptic surveys (stream water and shallow groundwater), longitudinal profile surveys by boat (continuous water-quality parameters in the stream), and modeling (MODFLOW and VS2DH) provided a combination of temporal, spatial, quantitative, and qualitative evidence of groundwater contributions to the river and the associated quality. Monitoring wells in nested clusters in the streambed (in-stream wells) and on both banks (bank wells) along the river were monitored monthly from September 2006 to January 2009. Nitrate concentrations in the bank wells ranged from less than detection—that is, less than 0.01 milligrams per liter (mg/L) as nitrogen (N)—to approximately 13 mg/L as N. Nitrate was not detected at 17 of 26 monitoring wells during the study period. Dissolved organic carbon concentrations among monitoring wells were highly variable, but they generally ranged from 1 to 4 mg/L. In a previous study, 14 bank wells were sampled once in 1988 following their original installation. With few exceptions, specific conductivity and nitrate concentrations measured in this study were virtually identical to those measured 20 years ago. Streambed synoptic measurements were made by using a temporarily installed drive-point piezometer at 113 distinct transects across the stream during 4 sampling events. Nitrate concentrations exceeded the detection limit of 0.01 mg/L as N in 5 percent of groundwater samples collected from the in-stream wells as part of the synoptic surveys. Only 7 of the 113 cross-sectional transects had nitrate concentrations greater than 1 mg/L as N. In contrast, surface waters in the San Joaquin River tended to have nitrate concentrations in the 1–3 mg/L as N range. A zone of lower oxygen (less than 2 mg/L) in the streambed could limit nitrate contributions from regional groundwater flow because nitrate can be converted to nitrogen gas within this zone. Appreciable concentrations of ammonium (average concentration was 1.92 mg/L as N, and 95th percentile was 10.34 mg/L as N) in the shallow groundwater, believed to originate from anoxic mineralization of streambed sediments, could contribute nitrogen to the overlying stream as nitrate following in-stream nitrification, however. Dissolved organic carbon concentrations were highly variable in the shallow groundwater below the river (1 to 6 ft below streambed) and generally ranged between 1 and 5 mg/L, but had maximum concentrations in the 15–25 mg/L range. The longitudinal profile surveys were not particularly useful in identifying groundwater discharge areas. However, the longitudinal approach described in this report was useful as a baseline survey of measured water-quality parameters and for identifying tributary inflows that affect surface-water concentrations of nitrate. Results of the calibrated MODFLOW model indicated that the simulated groundwater discharge rate was approximately 1.0 cubic foot per second per mile (cfs/mi), and the predominant horizontal groundwater flow direction between the deep bank wells was westward beneath the river. The modeled (VS2DH) flux values (river gain versus river loss) were calculated for the irrigation and non-irrigation season, and these fluxes were an order of magnitude less than those from MODFLOW. During the irrigation season, the average river gain was 0.11 cfs/mi, and the average river loss was ?0.05 cfs/mi. During the non-irrigation season, the average river gain was 0.10 cfs/mi, and the average river loss was 0.08 cfs/mi.

Groundwater deeper than 500 m contributes less than 0.1% of global river discharge

Nature Portfolio (Springer Nature) | February 23rd, 2023

Groundwater is one of the largest reservoirs of water on Earth but has relatively small fluxes compared to its volume. This behavior is exaggerated at depths below 500 

Groundwater is one of the largest reservoirs of water on Earth but has relatively small fluxes compared to its volume. This behavior is exaggerated at depths below 500 m, where the majority of groundwater exists and where residence times of millions to even a billion years have been documented. However, the extent of interactions between deep groundwater (>500 m) and the rest of the terrestrial water cycle at a global scale are unclear because of challenges in detecting their contributions to streamflow. Here, we use a chloride mass balance approach to quantify the contribution of deep groundwater to global streamflow. Deep groundwater likely contributes

Groundwater Quality in the Colorado River Basins, California

U.S. Geological Survey (USGS) | January 9th, 2013

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monito

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. Four groundwater basins along the Colorado River make up one of the study areas being evaluated. The Colorado River study area is approximately 884 square miles (2,290 square kilometers) and includes the Needles, Palo Verde Mesa, Palo Verde Valley, and Yuma groundwater basins (California Department of Water Resources, 2003). The Colorado River study area has an arid climate and is part of the Sonoran Desert. Average annual rainfall is about 3 inches (8 centimeters). Land use in the study area is approximately 47 percent (%) natural (mostly shrubland), 47% agricultural, and 6% urban. The primary crops are pasture and hay. The largest urban area is the city of Blythe (2010 population of 21,000). Groundwater in these basins is used for public and domestic water supply and for irrigation. The main waterbearing units are gravel, sand, silt, and clay deposited by the Colorado River or derived from surrounding mountains. The primary aquifers in the Colorado River study area are defined as those parts of the aquifers corresponding to the perforated intervals of wells listed in the California Department of Public Health database. Public-supply wells in the Colorado River basins are completed to depths between 230 and 460 feet (70 to 140 meters), consist of solid casing from the land surface to a depth of 130 of 390 feet (39 to 119 meters), and are screened or perforated below the solid casing. The main source of recharge to the groundwater systems in the Needles, Palo Verde Mesa, and Palo Verde Valley basins is the Colorado River; in the Yuma basin, the main source of recharge is from subsurface flow from the groundwater basins to the west. Groundwater discharge is primarily to pumping wells, evapotranspiration, and, locally, to the Colorado River.

Groundwater Simulation and Management Models for the Upper Klamath Basin, Oregon and California

U.S. Geological Survey (USGS) | May 5th, 2012

The upper Klamath Basin encompasses about 8,000 square miles, extending from the Cascade Range east to the Basin and Range geologic province in south-central Oregon and n

The upper Klamath Basin encompasses about 8,000 square miles, extending from the Cascade Range east to the Basin and Range geologic province in south-central Oregon and northern California. The geography of the basin is dominated by forested volcanic uplands separated by broad interior basins. Most of the interior basins once held broad shallow lakes and extensive wetlands, but most of these areas have been drained or otherwise modified and are now cultivated. Major parts of the interior basins are managed as wildlife refuges, primarily for migratory waterfowl. The permeable volcanic bedrock of the upper Klamath Basin hosts a substantial regional groundwater system that provides much of the flow to major streams and lakes that, in turn, provide water for wildlife habitat and are the principal source of irrigation water for the basin’s agricultural economy. Increased allocation of surface water for endangered species in the past decade has resulted in increased groundwater pumping and growing interest in the use of groundwater for irrigation. The potential effects of increased groundwater pumping on groundwater levels and discharge to springs and streams has caused concern among groundwater users, wildlife and Tribal interests, and State and Federal resource managers. To provide information on the potential impacts of increased groundwater development, and to aid in the development of a groundwater management strategy, the U.S. Geological Survey, in collaboration with the Oregon Water Resources Department and the Bureau of Reclamation, has developed a groundwater model that can simulate the response of the hydrologic system to these new stresses. The groundwater model was developed using the U.S. Geological Survey MODFLOW finite-difference modeling code and calibrated using inverse methods to transient conditions from 1989 through 2004 with quarterly stress periods. Groundwater recharge and agricultural and municipal pumping are specified for each stress period. All major streams and most major tributaries for which a substantial part of the flow comes from groundwater discharge are included in the model. Groundwater discharge to agricultural drains, evapotranspiration from aquifers in areas of shallow groundwater, and groundwater flow to and from adjacent basins also are simulated in key areas. The model has the capability to calculate the effects of pumping and other external stresses on groundwater levels, discharge to streams, and other boundary fluxes, such as discharge to drains. Historical data indicate that the groundwater system in the upper Klamath Basin fluctuates in response to decadal climate cycles, with groundwater levels and spring flows rising and declining in response to wet and dry periods. Data also show that groundwater levels fluctuate seasonally and interannually in response to groundwater pumping. The most prominent response is to the marked increase in groundwater pumping starting in 2001. The calibrated model is able to simulate observed decadal-scale climate-driven fluctuations in the groundwater system as well as observed shorter-term pumping-related fluctuations. Example model simulations show that the timing and location of the effects of groundwater pumping vary markedly depending on the pumping location. Pumping from wells close (within a few miles) to groundwater discharge features, such as springs, drains, and certain streams, can affect those features within weeks or months of the onset of pumping, and the impacts can be essentially fully manifested in several years. Simulations indicate that seasonal variations in pumping rates are buffered by the groundwater system, and peak impacts are closer to mean annual pumping rates than to instantaneous rates. Thus, pumping effects are, to a large degree, spread out over the entire year. When pumping locations are distant (more than several miles) from discharge features, the effects take many years or decades to fully impact those features, and much of the pumped water comes from groundwater storage over a broad geographic area even after two decades. Moreover, because the effects are spread out over a broad area, the impacts to individual features are much smaller than in the case of nearby pumping. Simulations show that the discharge features most affected by pumping in the area of the Bureau of Reclamation’s Klamath Irrigation Project are agricultural drains, and impacts to other surface-water features are small in comparison. A groundwater management model was developed that uses techniques of constrained optimization along with the groundwater flow model to identify the optimal strategy to meet water user needs while not violating defined constraints on impacts to groundwater levels and streamflows. The coupled groundwater simulation-optimization models were formulated to help identify strategies to meet water demand in the upper Klamath Basin. The models maximize groundwater pumping while simultaneously keeping the detrimental impacts of pumping on groundwater levels and groundwater discharge within prescribed limits. Total groundwater withdrawals were calculated under alternative constraints for 2 Groundwater Simulation and Management Models for the Upper Klamath Basin, Oregon and California drawdown, reductions in groundwater discharge to surface water, and water demand to understand the potential benefits and limitations for groundwater development in the upper Klamath Basin. The simulation-optimization model for the upper Klamath Basin provides an improved understanding of how the groundwater and surface-water system responds to sustained groundwater pumping within the Bureau of Reclamation’s Klamath Project. Optimization model results demonstrate that a certain amount of supplemental groundwater pumping can occur without exceeding defined limits on drawdown and stream capture. The results of the different applications of the model demonstrate the importance of identifying constraint limits in order to better define the amount and distribution of groundwater withdrawal that is sustainable.

Groundwater Sustainability Plan for the Northern and Central Delta-Mendota Regions

San Luis & Delta-Mendota Water Authority (SLDMWA) | November 30th, 2019

Table of Contents Executive Summary Introduction Plan Area Governance and Administration Outreach and Communication Basin Setting Sustainable M

Table of Contents Executive Summary Introduction Plan Area Governance and Administration Outreach and Communication Basin Setting Sustainable Management Criteria Sustainability Implementation Plan Implementation Technical Studies Appendices A. Coordination Agreements B. Common Chapter C. Outreach Documentation D. Water Budget Model Documentation E. Hydrographs for Sustainable Management Criteria F. Quality Assurance Program G. Noticing and Adoption Implementation H. Elements Guide

Guide to Compliance with California’s Sustainable Groundwater Management Act: How to avoid the “undesirable result” of “significant and unreasonable adverse impacts on beneficial uses of surface waters"

Stanford University | September 4th, 2018

In enacting the Sustainable Groundwater Management Act (SGMA) the California Legislature, for the first time ever, expressly linked the two historically distinct legal r

In enacting the Sustainable Groundwater Management Act (SGMA) the California Legislature, for the first time ever, expressly linked the two historically distinct legal regimes governing water in the state that previously had been entirely separate: one governing surface water use and the other groundwater use. SGMA requires Groundwater Sustainability Agencies (GSAs) and their Groundwater Sustainability Plans (GSPs or Plans) to consider and address the groundwater-surface water interaction, and specifically the impacts of groundwater pumping on surface water beneficial uses. SGMA defines sustainable groundwater management as the avoidance of six “undesirable results” identified in the law. The purpose of this guide is to help GSAs and other stakeholders understand and comply with the requirement of SGMA that groundwater withdrawals must not cause “significant and unreasonable adverse impacts on beneficial uses of the surface water,” known as “undesirable result no. 6.” This guide is based on the principle that existing legal frameworks (laws, regulations, court decisions, etc.) provide the clearest and most pertinent guidance on what constitutes undesirable result no. 6. This guide addresses only the explicit legal aspects of this statutory mandate. It does not address technical and scientific aspects of SGMA compliance and offers no advice on the steps GSAs must take to get an adequate technical understanding of the groundwater-surface water connections under their purview. GSAs may look to other sources for guidance on that front. In addition, “Navigating Groundwater-Surface Water Interactions under the Sustainable Groundwater Management Act,” authored by experts at the University of California Berkeley provides a helpful overview of the steps involved in implementing SGMA provisions relating to groundwater-surface water interactions.  

Hudson v. Dailey

Supreme Court of California | December 1st, 1909

Humboldt County | Near-Stream Recharge: Reconnecting Surface and Groundwater

Nature Conservancy | January 1st, 2019

Baker Creek, a tributary to the Mattole River, is a key stream for the federally and state protected coho salmon, however portions of the river were running dry

Baker Creek, a tributary to the Mattole River, is a key stream for the federally and state protected coho salmon, however portions of the river were running dry due to drought, impeding salmon migration and deteriorating habitat. A partnership of federal and state agencies, consultants and NGOs are working to increase groundwater levels with both instream and offchannel projects to ensure year-round water in the creek and floodplain wetlands for salmon habitat. Salmon now returning to the stream, with Phase 1 of the project complete, 1,300 juvenile coho have been counted in Baker Creek after the previous five years saw zero juveniles. Stream restoration in Baker Creek in the Mattole River watershed is an excellent example of a multi- benefit project recharging groundwater, as well as providing the instream coho salmon habitat that has been disappearing.

Hydrogeologic Conceptual Model for the Owens Valley Groundwater Basin (6-12), Inyo and Mono Counties

Inyo County Water Department (ICWD) | January 27th, 2016

This report provides a hydrogeologic conceptual model of the Owens Valley Groundwater Basin (OVGB) compiled from numerous sources including the US Geological Survey, Los

This report provides a hydrogeologic conceptual model of the Owens Valley Groundwater Basin (OVGB) compiled from numerous sources including the US Geological Survey, Los Angeles Department of Water and Power, Inyo and Mono Counties, the California Department of Fish and Wildlife, and the California Department of Water Resources. Because groundwater and surface water systems are linked, both systems are described here, prefaced by a summary of the physical setting of the OVGB.