Aquatic Life Study Final Report

San Joaquin Valley Drainage Authority | January 6th, 2016

Central Valley Salinity Alternatives for Long Term Sustainability (CV‐SALTS) is developing a comprehensive regulatory and programmatic approach to the management of sa

Central Valley Salinity Alternatives for Long Term Sustainability (CV‐SALTS) is developing a comprehensive regulatory and programmatic approach to the management of salt and nitrate in the Central Valley that is consistent with the State Recycled Water Policy (SRWP). This work is being carried out collaboratively with the Central Valley Regional Water Quality Control Board (Central Valley Water Board), the State Water Resources Control Board (State Water Board), the Central Valley Salinity Coalition and Stakeholders. As stated in the CV‐SALTS Strategy and Framework document, the strategy to fulfill the requirements of the SRWP is to adopt a Central Valley Salt and Nitrate Management Plan (SNMP) and revise the Basin Plans applicable to the Central Valley to facilitate implementation of the SNMP. This effort includes a technical review of the state of science with regards to the establishment of appropriate water quality objectives (WQO) to protect surface water beneficial uses. This Aquatic Life Study was undertaken to evaluate the technical basis for the establishment of salinity‐related WQOs to protect aquatic life in the Central Valley. The findings of this analysis will be considered by CV‐SALTS during development and adoption of the SNMP.

Arsenic in California Drinking Water

Environmental Integrity Project | September 15th, 2016

More than three years after the U.S. Environmental Protection Agency found California in noncompliance with the federal Safe Drinking Water Act, 95 community water system

More than three years after the U.S. Environmental Protection Agency found California in noncompliance with the federal Safe Drinking Water Act, 95 community water systems in the state, serving more than 55,000 people, are still providing water with illegal levels of arsenic, according to an examination of state data for the last two years. Arsenic occurs naturally in the soil and groundwater in parts of California and is a known carcinogen that may also damage the developing brains of children and cause other health problems. Many of the people drinking excessive levels of arsenic are poor and/or Latino or African- American, with a cluster in the San Joaquin Valley. Nearly all have been exposed to excessive arsenic levels for at least five years and probably longer.

Assessing Causes and Consequences of Winter Surface Water Dynamics in California's Central Valley Using Satellite Remote Sensing

Wiley Online Library | June 3rd, 2025

California's Central Valley is increasingly vulnerable to winter floods. A comprehensive spatial baseline of flood extents is critical for inundation analyses that can en

California's Central Valley is increasingly vulnerable to winter floods. A comprehensive spatial baseline of flood extents is critical for inundation analyses that can enhance future flood predictions, but cloud cover has prevented the regular observation of surface water extents with optical satellite imagery. In this study, we leveraged the daily resolution of Moderate Resolution Imaging Spectroradiometer (MODIS) satellite data to create a continuous series of monthly Dynamic Surface Water Extent (DSWEmod) images across the Central Valley from January 2003 to January 2023. We used the timeseries to assess the climatic driving forces of winter (Oct–April) surface water variability at sub-basin and pixel scales. At the sub-basin scale, we evaluated the influences of winter precipitation, occurrence of atmospheric rivers, and antecedent soil moisture on monthly surface water extents and found that the greatest correspondence occurs in mid-winter (Dec–Feb); in contrast, non-precipitation drivers such as water management play a stronger role in autumn and spring. The pixel-level analysis identified the probabilities of precipitation-driven surface water occurrences in the Sacramento basin are highest along rivers, conveyance channels, and floodways, with higher probabilities under wetter antecedent soil moisture conditions. Precipitation-driven surface water occurrences are also common in leveed areas and outside flood boundaries designated by state and federal agencies where exposure of structures to inundation was larger in terms of their value. Finally, areas with more frequent precipitation-driven flooding have poor recharge potential but are commonly within 5 km of areas classified as having good potential. This study demonstrates a novel approach for exploring the utility of MODIS for understanding surface water dynamics in mid-winter, a period characterized by peak precipitation, flood risk, and surface water extent. This information can provide valuable insights for (1) assessing flood risks for infrastructure and populations, (2) identifying areas most suited to strategic water management investments to increase recharge, and (3) analyzing precipitation thresholds that trigger flooding to allow proactive water management strategies to minimize damage and maximize recharge.

Assessing potential effects of oil and gas development activities on groundwater quality near and overlying the Elk Hills and North Coles Levee Oil Fields, San Joaquin Valley, California

PLOS | August 5th, 2024

Assessing virtual water trade and inequalities in household water footprints across California’s counties

Publisher not available | March 20th, 2025

The concept of virtual water trade suggests water flows from water-rich to water-scarce regions, but local disparities are often overlooked. This study uses a multi-regio

The concept of virtual water trade suggests water flows from water-rich to water-scarce regions, but local disparities are often overlooked. This study uses a multi-regional input-output (MRIO) model to assess virtual water transfers among California’s 58 counties and the rest of the conterminous U.S. in 2017. Results show the Central Valley exported large volumes of virtual water via water-intensive crops (e.g., fruits and vegetables) but imported water embodied in industrial, mining, and thermoelectric processes. These imports eased water stress in the Central and South Coast but left Central Valley scarcity unresolved. Linking household consumption with MRIO reveals the highest-income group (over US$200k) had per capita water footprints 1.8 times larger than the lowest-income group (below US$15k). Although household size and consumption patterns mitigated this gap, Central Valley’s high water intensity fueled excessive footprints. The study underscores the need for targeted, equitable water management policies, promoting more effective water conservation strategies.

At Risk: Public Supply Well Vulnerability Under California’s Sustainable Groundwater Management Act

Pacific Institute | June 1st, 2021

Base of fresh ground water (approximately 3,000 micromhos) in the San Joaquin Valley, California

U.S. Geological Survey (USGS) | June 30th, 1971

Widespread pumping of groundwater in the San Joaquin Valley began about 1900, and since 1940 pumpage has increased at an accelerated rate. In response to the heavy withdr

Widespread pumping of groundwater in the San Joaquin Valley began about 1900, and since 1940 pumpage has increased at an accelerated rate. In response to the heavy withdrawal of groundwater, water levels have declined rapidly beneath extensive areas of the valley. Consequently, it becomes necessary to delineate the base of fresh groundwater so that changes in thickness of the fresh-water zone can be monitored, and limited depths of water wells can be determined. In turn, those data will be useful in determining favorable areas for groundwater storage, and areas and depths for waste-water disposal wells. Because other agencies and the U.S. Geological Survey have collected a vast amount of well log and other data, most of the information in this report was assembled from existing files. However, for areas where data were scanty, a few hundred additional electrical logs were collected to supplement the available information.

Base of fresh water, groundwater salinity, and well distribution across California

National Academy of Sciences (NAS) | December 9th, 2020

The depth at which groundwaters transition from fresh to more saline—the “base of fresh water”—is frequently used to determine the stringency and types of measure

The depth at which groundwaters transition from fresh to more saline—the “base of fresh water”—is frequently used to determine the stringency and types of measures put in place to manage groundwater and protect it from contamination. Therefore, it is important to understand salinity distributions and compare defined bases of fresh water with salinity distributions and groundwater well depths. Here we analyze two distinct datasets: 1) a large set of total dissolved solids concentration (TDS) measurements (n = 216,754) and 2) groundwater well locations and depths (n = 399,454) across California. We find that 19 to 56% of the groundwater TDS measurements made at depths deeper than defined bases of fresh water pump fresh groundwater (TDS < 2,000 mg/L). Because fresh groundwater is found at depths deeper than the base of fresh water, current policies informed by base of fresh water assessments may not be managing and protecting large volumes of deep fresh groundwater. Furthermore, we find that nearly 4% of existing groundwater wells penetrate defined bases of fresh water, and nearly 16% of wells overlie it by no more than 100 m, evidencing widespread encroachment on the base of fresh water by groundwater users. Consequently, our analysis suggests that groundwater sustainability in California may be poorly safeguarded in some places and that the base-of-fresh-water concept needs to be reconsidered as a means to define and manage groundwater.

Basin-scale responses of groundwater-resource quality to drought and recovery, San Joaquin Valley, California

Hydrological Processes (Wiley) | April 15th, 2024

Groundwater-resource quality is assumed to be less responsive to drought compared to that of surface water due to relatively long transit times of recharge to drinking-su

Groundwater-resource quality is assumed to be less responsive to drought compared to that of surface water due to relatively long transit times of recharge to drinking-supply wells. Here, we evidence dynamic perturbations in aquifer pressure dynamics during drought and subsequent recovery periods cause dramatic shifts in groundwater quality on a basin scale. We used a novel application of time-series clustering on annual nitrate anomalies at >450 public-supply wells (PSWs) across California's San Joaquin Valley during 2000–22 to group subpopulations of wells with similar water-quality responses to drought. Additionally, we statistically evaluated the direction and magnitude of multi-constituent water-quality changes across the San Joaquin Valley using a broader dataset of >3000 PSWs with data during two select hydrologic stress periods representing an extreme drought (2012–16) and subsequent recovery (2016–19). Results of time-series clustering and stress-period change analyses corroborate a predominant regional response to pumping stress characterized by increased concentrations of anthropogenic constituents (nitrate, total dissolved solids) and decreased concentrations of geogenic constituents (arsenic, fluoride), which largely reversed during recovery. Cluster analysis also identified a secondary, less commonly occurring group of PSWs where nitrate decreased during drought, but explanatory factor analysis was not able to discern hydrogeologic drivers for these two divergent response patterns. Long-term tracer data support the hypothesis that the predominant regional signal of nitrate increase during drought is caused by enhanced capture of modern-aged groundwater by PSWs during periods of pumping stress, which can drive rapid changes in water quality on seasonal and multiannual timescales. Pumping-induced migration of modern, oxic groundwater to depth during drought may affect geochemical conditions in deeper portions of regional aquifers controlling the mobility of geogenic contaminants over the long term.

Bayesian nitrate source apportionment to individual groundwater wells in the Central Valley by use of elemental and isotopic tracers

American Geophysical Union (AGU) | July 31st, 2016

Groundwater quality is a concern in alluvial aquifers that underlie agricultural areas, such as in the San Joaquin Valley of California. Shallow domestic wells (less tha

Groundwater quality is a concern in alluvial aquifers that underlie agricultural areas, such as in the San Joaquin Valley of California. Shallow domestic wells (less than 150 m deep) in agricultural areas are often contaminated by nitrate. Agricultural and rural nitrate sources include dairy manure, synthetic fertilizers, and septic waste. Knowledge of the relative proportion that each of these sources contributes to nitrate concentration in individual wells can aid future regulatory and land management decisions. We show that nitrogen and oxygen isotopes of nitrate, boron isotopes, and iodine concentrations are a useful, novel combination of groundwater tracers to differentiate between manure, fertilizers, septic waste, and natural sources of nitrate. Furthermore, in this work, we develop a new Bayesian mixing model in which these isotopic and elemental tracers were used to estimate the probability distribution of the fractional contributions of manure, fertilizers, septic waste, and natural sources to the nitrate concentration found in an individual well. The approach was applied to 56 nitrate-impacted private domestic wells located in the San Joaquin Valley. Model analysis found that some domestic wells were clearly dominated by the manure source and suggests evidence for majority contributions from either the septic or fertilizer source for other wells. But, predictions of fractional contributions for septic and fertilizer sources were often of similar magnitude, perhaps because modeled uncertainty about the fraction of each was large. For validation of the Bayesian model, fractional estimates were compared to surrounding land use and estimated source contributions were broadly consistent with nearby land use types.