Estuary News, June 2022

San Francisco Estuary Partnership (SFEP) | June 15th, 2022

Evaluation and Refinement of Chlorophyll-a Algorithms for High-Biomass Blooms in San Francisco Bay

Remote Sensing (MDPI) | March 21st, 2024

Evaluation of Land Subsidence and Ground Failures at Bicycle Basin, Fort Irwin National Training Center, California, 1992–2017

U.S. Geological Survey (USGS) | June 5th, 2019

Groundwater has been pumped in the Bicycle Basin at Fort Irwin National Training Center since the 1960s, and the amount pumped has generally increased since the 1990s. Af

Groundwater has been pumped in the Bicycle Basin at Fort Irwin National Training Center since the 1960s, and the amount pumped has generally increased since the 1990s. After a large crack (approximately 0.5-kilometer long) formed at the surface of Bicycle Lake playa during 2005–06 in the area used as an aircraft runway, a monitoring study was initiated by the U.S. Geological Survey, in cooperation with the U.S. Army Fort Irwin National Training Center, to help determine the cause. The extent and effect of groundwater-level declines and land-surface deformation in Bicycle Basin were evaluated using a number of approaches, including water-level measurements from December 2007 to June 2017, land surveys across the playa area, interferometric synthetic aperture radar (InSAR) analyses, geophysical surveys of the playa area, and numerical experiments to test hypotheses about soil mechanical processes. A specific objective of this study was to evaluate the recent development of ground failures in the form of large, surface cracks that pose a hazard to aircraft operations on the Bicycle Lake playa airstrip.  Another large crack and set of interconnected cracks formed at the surface of Bicycle Lake playa in 2013 following a period of inundation similar to that of 2005–06; however, the 2013 cracks formed a network rather than a single feature. Groundwater pumping resulted in more than 27 meters (90 feet) of water-level declines in wells north of the Bicycle Lake playa from 1990 to 2017, and InSAR interferograms indicated more than 400 millimeters (16 inches) of subsidence during 1993–2015. Subsidence rates calculated from InSAR interferograms were variable, temporally and spatially. Results of leveling surveys indicated differential subsidence between 2009 and 2016 along a transect across the playa to the area of maximum subsidence; there was less subsidence south of the 2005–06 crack than north of it. The steepest subsidence gradient for this time was in the area of maximum subsidence. Repeat tape-extensometer measurements from April 2009 to November 2017 across the main-runway crack indicated slight opening along part of the crack. A baseline lidar (light detection and ranging) survey of the main-runway crack was done in January 2009 to track the development of this feature. During the 95-months from January 2009 to December 2016, 0.5 meters (19.7 inches) of subsidence was observed next to the subsidence pit in the crack along the western end of the scanned area, presumably due to erosion and backfilling when the lake was inundated. Standing water in the crack along the eastern end of the scanned area prevented determining change for that part of the crack. Time-series, shaded-relief images show the progression of change in the crack from January 2009 through December 2016, with the crack closing and opening, depending on the time of most recent inundation relative to when the scans were taken. Volumetric changes in the size of the crack, calculated between the sequential lidar surveys, show that from 2009 to 2016, the cumulative volumetric change was 1.5 cubic meters (54 cubic feet). This volume is a minimum estimate because the crack volume below the water surface in the pits was not included in the calculations. Subsurface imaging of the 2005–06 main-runway crack by a series of electrical resistivity tomography surveys in 2008 and 2017 indicated that the crack could extend 5 meters (16 feet) in the subsurface.  Electromagnetic induction surveys in 2008, 2014, and 2015 evaluated the technique for ground-failure monitoring and showed that the technique was effective at revealing anomalies correlated with the features of concern in the playa area, such as the 2005–06 crack, numerous ”healed” macropolygon features, and scattered sink-like depressions.  Results from numerical experiments simulating water-table decline at depth indicated that the material deposits in the desaturating capillary fringe zone might not be able to transmit large enough stresses up through the overlying soil to cause cracks at the land surface. Results from simulations of desiccation in the presence of a regional tectonically induced stress field, however, tended to support the hypothesis that the combined processes could control the formation of giant desiccation macropolygons in certain areas, such as Bicycle Lake playa.

Evaluation of PCB Concentrations, Masses, and Movement from Dredged Areas in San Francisco Bay

San Francisco Estuary Institute (SFEI) | March 28th, 2019

This report is a product of a Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) project funded to analyze sediment PCB data in the Dredged Materia

This report is a product of a Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) project funded to analyze sediment PCB data in the Dredged Materials Management Office (DMMO) database to address priority management questions for PCBs. 

Evaluation of the California State Water Resource Control Board’s Bioassessment Program

California State Water Resources Control Board (SWRCB) | May 15th, 2009

The State of California’s bioassessment, monitoring and assessment (M&A), and water quality standards (WQS) programs were reviewed in January 2008 using the

The State of California’s bioassessment, monitoring and assessment (M&A), and water quality standards (WQS) programs were reviewed in January 2008 using the U.S. EPA’s Critical Technical Elements and Programmatic Review process (Barbour and Yoder 2008; Quasney and Yoder 2008), which evaluates key components of these state programs and existing and planned capacities. The review process results in technical, policy, and management recommendations for building, refining and maintaining functional and effective bioassessment and M&A tools that support the full spectrum of WQS and management programs. This review was conducted by a two-person review team with national expertise at evaluating, building, and implementing state and tribal programs. Bioassessment, the use of resident aquatic biota as direct indicators of the biological integrity of water bodies, is a powerful tool for water resource regulatory programs. The need for state water quality agencies to develop and maintain robust bioassessment programs is underscored by the National Research Council’s critical review of state TMDL, M&A, and WQS programs (National Research Council 2001). The NRC’s review makes clear that all states need better biological endpoints, adequate M&A, and tiered aquatic life uses (TALU) in order to develop and refine appropriate and effective WQS that result in more accurate and appropriate protection for biological resources. While the federal Clean Water Act (CWA) has long required states to protect and restore the chemical, physical, and biological integrity of the nation’s waters, the California Water Boards have only recently begun to develop the tools, expertise and capacity that they will need in order to implement modernized WQS that protect biological integrity. However, because of the substantial investment in the development of bioassessment tools made since the mid-1990s by the state’s Department of Fish and Game, California is now positioned to initiate the process of integrating bioassessments into its WQS and monitoring and assessment programs via the development and implementation of narrative and numeric biocriteria.

Evaluation of the characteristics, discharge, and water quality of selected springs at Fort Irwin National Training Center, San Bernardino County, California

U.S. Geological Survey (USGS) | March 29th, 2024

Eight springs and seeps at Fort Irwin National Training Center were described and categorized by their general characteristics, discharge, geophysical properties, and wat

Eight springs and seeps at Fort Irwin National Training Center were described and categorized by their general characteristics, discharge, geophysical properties, and water quality between 2015 and 2017. The data collected establish a modern (2017) baseline of hydrologic conditions at the springs. Two types of springs were identified: (1) precipitation-fed upland springs (Cave, Desert King, Devouge, No Name, and Panther Springs) and (2) groundwater discharge-fed basin springs (Garlic, Bitter, and Jack Springs). Comparison of electrical resistivity tomography data collected at groundwater basin springs from 2015 to 2017 indicated that spring discharge and connection to the underlying groundwater system is highly focused, although the springs themselves appear diffuse and are spread out over a large area.

Feather River Hydrologic Observatory: Improving Hydrological Snowpack Forecasting for Hydropower Generation Using Intelligent Information Systems

California Energy Commission (CEC) | August 31st, 2018

Changing climatic conditions and a lack of representative snow cover data challenge the ability to accurately model and fully utilize the water resources of montane snowp

Changing climatic conditions and a lack of representative snow cover data challenge the ability to accurately model and fully utilize the water resources of montane snowpack on which California depends. This project aims to improve scientific understanding of snowpack modeling and streamflow forecasting techniques. Though relevant across industries and the state, this research focuses on hydropower applications in the North Fork of the Feather River. Central components of the project are four wireless sensor networks, installed in locations that are representative of vegetation and topography patterns across the basin. The networks collect snow, temperature, relative humidity, soil moisture, and soil temperature data every 15 minutes. By blending this information with remote sensing data and historical maps, we estimate the spatial distribution of snow water resources at high resolution. These outputs can help improve runoff forecasting tools such as the Precipitation-Runoff Modeling System (PRMS). Preliminary results show that wireless sensor networks can successfully track hydrologic states and fluxes in real time and provide a more representative picture of snowpack accumulation and melt than traditional index stations. Network data are also used to gain insight into rain-on-snow events, which are a key streamflow generation mechanism for the Feather River. The data show that the current calibration of PRMS on the Feather River could overestimate snowfall and underestimate liquid precipitation. Future steps include a sensitivity analysis of PRMS to identify its dominant parameters and conceptual limitations, as well as a full, dynamic recalibration of the model. Blended maps of snow water equivalent will also be assimilated into the model. These results will be included in the decision-support suite for PG&E, California’s largest electric and natural gas utility, and an analysis will be performed to assess results’ economic value for stakeholders in the energy and water-supply sectors. 

Field Operations Manual for the Regional Monitoring Program (Version 1, Sediment)

San Francisco Estuary Institute (SFEI) | August 1st, 2018

This Field Operations Manual (FOM) of the Regional Monitoring Program (RMP) is intended as a reference document for each sampling effort. The FOM describes in detail how

This Field Operations Manual (FOM) of the Regional Monitoring Program (RMP) is intended as a reference document for each sampling effort. The FOM describes in detail how field staff should collect water, sediment, bivalve, bird egg, and sport fish samples for all RMP sampling efforts.  Sampling conducted by the RMP should also reference the QA Program Plan (QAPP) document, which describes the entire program, and is the repository for details about laboratories, analytical methods, MDLs, sample handling, sample preservation, and quality assurance procedures. The FOM is a companion document to the QAPP, and provides a more detailed description of sampling methods that are only outlined in Section 11 of the QAPP.  In addition, each individual sampling effort will have a unique Cruise Plan or Sampling and Analysis Plan (SAP). The SAP describes the details of each sampling effort, including dates, times, places, and staff, as well as the parameters that are being collected and analyzed. The SAP will reference this FOM for the detailed sampling methods. If different sampling methods are needed for a particular study, the SAP will describe deviations from the normal methods described in the FOM. 

Final Environmental Impact Report Volume II: Revised Draft EIR Comprehensive Groundwater Cleanup Strategy for Historical Chromium Discharges from PG&E’s Hinkley Compressor Station, San Bernardino County

California State Water Resources Control Board (SWRCB) | April 20th, 2013

Click here for Volume I.

Click here for Volume I.

Final Technical Report #1: Condition Assessment of Coastal Streams in Southern and Central California

California Department of Fish and Wildlife (CDFW) | July 1st, 2004

Historical assessments of stream condition have usually focused on describing the chemical quality of streams. As we have made progress in controlling chemical problems�

Historical assessments of stream condition have usually focused on describing the chemical quality of streams. As we have made progress in controlling chemical problems it has become obvious that the ultimate concern is actually the health of the plants and animals that inhabit these streams (EPA 2000). Streams in good ecological condition provide habitat for diverse aquatic communities, and provide clean drinking water and recreational opportunities for people. Biological organisms in a stream integrate the many chemical and physical stressors that act on the stream ecosystem, thus stream condition can be determined by assessing appropriate biological indicators, or combinations of these indicators, called indices. California’s Aquatic Bioassessment Lab recently developed a benthic index of biotic integrity (B-IBI) for the central and southern coasts of California (Ode et. al. in review). The index is based on benthic macroinvertebrate (BMI) samples collected from 275 sites in this region by the US Forest Service, US EPA and regional Water Quality Control Boards. The index defines the composition of BMI assemblages when human disturbance is absent or minimal (reference conditions), and because it is based on metrics that are responsive to key stressor gradients, it allows detection of potential ecological impairment when BMI samples from test sites are compared to reference conditions. Thus, the B-IBI provides a yardstick for measuring ecological conditions, and allows us to categorize site conditions as either “Good”, “Fair” or “Poor” based on BMI assemblages.