Final Technical Report #1: Condition Assessment of Coastal Streams in Southern and Central California

California Department of Fish and Wildlife (CDFW) | July 1st, 2004

Historical assessments of stream condition have usually focused on describing the chemical quality of streams. As we have made progress in controlling chemical problems�

Historical assessments of stream condition have usually focused on describing the chemical quality of streams. As we have made progress in controlling chemical problems it has become obvious that the ultimate concern is actually the health of the plants and animals that inhabit these streams (EPA 2000). Streams in good ecological condition provide habitat for diverse aquatic communities, and provide clean drinking water and recreational opportunities for people. Biological organisms in a stream integrate the many chemical and physical stressors that act on the stream ecosystem, thus stream condition can be determined by assessing appropriate biological indicators, or combinations of these indicators, called indices. California’s Aquatic Bioassessment Lab recently developed a benthic index of biotic integrity (B-IBI) for the central and southern coasts of California (Ode et. al. in review). The index is based on benthic macroinvertebrate (BMI) samples collected from 275 sites in this region by the US Forest Service, US EPA and regional Water Quality Control Boards. The index defines the composition of BMI assemblages when human disturbance is absent or minimal (reference conditions), and because it is based on metrics that are responsive to key stressor gradients, it allows detection of potential ecological impairment when BMI samples from test sites are compared to reference conditions. Thus, the B-IBI provides a yardstick for measuring ecological conditions, and allows us to categorize site conditions as either “Good”, “Fair” or “Poor” based on BMI assemblages.

Fire influence on land–water interactions in aridland catchments

Oxford University Press (OUP) | January 9th, 2025

Wildfires have increased in size, frequency, and intensity in arid regions of the western United States because of human activity, changing land use, and rising temperatu

Wildfires have increased in size, frequency, and intensity in arid regions of the western United States because of human activity, changing land use, and rising temperature. Fire can degrade water quality, reshape aquatic habitat, and increase the risk of high discharge and erosion. Drawing from patterns in montane dry forest, chaparral, and desert ecosystems, we developed a conceptual framework describing how interactions and feedbacks among material accumulation, combustion of fuels, and hydrologic transport influence the effects of fire on streams. Accumulation and flammability of fuels shift in opposition along gradients of aridity, influencing the materials available for transport. Hydrologic transport of combustion products and materials accumulated after fire can propagate the effects of fire to unburned stream–riparian corridors, and episodic precipitation characteristic of arid lands can cause lags, spatial heterogeneity, and feedbacks in response. Resolving uncertainty in fire effects on arid catchments will require monitoring across hydroclimatic gradients and episodic precipitation.

First flush analysis of urban storm runoff

Science of the Total Environment (Elsevier) | July 3rd, 2003

Stormwater runoff was monitored on 13 separate urban watersheds, which were chosen to represent distinct types of residential and industrial development, along with vario

Stormwater runoff was monitored on 13 separate urban watersheds, which were chosen to represent distinct types of residential and industrial development, along with various watershed characteristics. A total of 38 storm events were monitored to investigate the first flush phenomenon. The first flush phenomenon may be defined as the initial period of stormwater runoff during which the concentration of pollutants is substantially higher than during later stages. The magnitude of the first flush phenomenon, and if it actually occurs, was calculated using a method of data analysis which results in determining the ‘event mean concentration’ (EMC). The magnitude of the first flush phenomenon was found to be greater for some pollutants (e.g. suspended solids from residential areas) and less for others (e.g. chemical oxygen demand from industrial areas). No correlation was observed between the first flush phenomenon and the antecedent dry weather period, however, the first flush phenomenon was greater for smaller watershed areas.

Fish die-offs are concurrent with thermal extremes in north temperate lakes

Nature Portfolio (Springer Nature) | July 8th, 2019

As environmental temperatures continue to rise and organisms experience novel and potentially lethal conditions, the possibility of increased mass mortality events for an

As environmental temperatures continue to rise and organisms experience novel and potentially lethal conditions, the possibility of increased mass mortality events for animal populations appears likely. Yet, due to die-off rarity and unpredictability, there have been few large-scale attempts to quantify the relationship between mass die-offs and local environmental temperatures. Here, we address this issue by analysing a database of 502 freshwater fish die-offs combined with lake-specific temperature profiles simulated for north temperate lake ecosystems. Die-offs driven by extreme summer conditions occurred disproportionately in lakes with warmer average surface temperatures and during periods of extreme heat. In contrast, we observed no relationships between current thermal extremes and die-offs attributed to infectious disease or winter environmental conditions. We forecast fish die-offs driven by summer environmental conditions to double by mid-century for north temperate lakes (2041–2059) and to increase more than fourfold by late century (2081–2099), particularly at southern latitudes. These results expose a direct link between novel temperature regimes and the increased probability of catastrophic ecological events in freshwater ecosystems.

Fish-Habitat Relationships Along the Estuarine Gradient of the Sacramento-San Joaquin Delta, California: Implications for Habitat Restoration

Estuaries and Coasts (Springer) | June 6th, 2018

Estuaries are highly variable environments where fish are subjected to a diverse suite of habitat features (e.g., water quality gradients, physical structure) that filt

Estuaries are highly variable environments where fish are subjected to a diverse suite of habitat features (e.g., water quality gradients, physical structure) that filter local assemblages from a broader, regional species pool. Tidal, climatological, and oceanographic phenomena drive water quality gradients and, ultimately, expose individuals to other habitat features (e.g., stationary physical or biological elements, such as bathymetry or vegetation). Relationships between fish abundances, water quality gradients, and other habitat features in the Sacramento-San Joaquin Delta were examined as a case example to learn how habitat features serve as filters to structure local assemblages in large river-dominated estuaries. Fish communities were sampled in four tidal lakes along the estuarine gradient during summer-fall 2010 and 2011 and relationships with habitat features explored using ordination and generalized linear mixed models (GLMMs). Based on ordination results, landscape-level gradients in salinity, turbidity, and elevation were associated with distinct fish assemblages among tidal lakes. Native fishes were associated with increased salinity and turbidity, and decreased elevation. Within tidal lakes, GLMM results demonstrated that submersed aquatic vegetation density was the dominant driver of individual fish species densities. Both native and non-native species were associated with submersed aquatic vegetation, although native and non-native fish populations only minimally overlapped. These results help to provide a framework for predicting fish species assemblages in novel or changing habitats as they indicate that species assemblages are driven by a combination of location within the estuarine gradient and site-specific habitat features.

Flame retardants and plastic additives in San Francisco Bay: Targeted monitoring of organophosphate esters and bisphenols

San Francisco Estuary Institute (SFEI) | January 31st, 2020

Flood Risk and Management of California's Sacramento-San Joaquin Delta Levee System

University of California, Santa Cruz (UC Santa Cruz) | September 15th, 2020

Flow Augmentations Modify an Estuarine Prey Field

University of California, Davis (UC Davis) | June 15th, 2023

Flow Recommendations to the State Water Resources Control Board

California Department of Fish and Wildlife (CDFW) | May 22nd, 2008

Pursuant to Public Resouces Code (PRC) Section 10001, in the early 1980s, the Department of Fish and Game (DFG) in coordination with all regional DFG offices, identified

Pursuant to Public Resouces Code (PRC) Section 10001, in the early 1980s, the Department of Fish and Game (DFG) in coordination with all regional DFG offices, identified 21 streams and watercourses for which minimum flow levels needed to be established in order to assure the continued viability of stream-related fish and wildlife resources. Over approximately 20 years, DFG investigated the instream flow needs of these listed streams and watercourses.  The investigations included field studies, data analyses, and consultations with local, state, and federal agencies and interested individuals and organizations.  As a result of the investigations, DFG prepared instream flow recommendations for the listed streams. The attached transmittal summarizes the flow recommendations prepared by DFG pursuant to PRC 10000.  Submission of these recommendations to the State Water Resources Control Board (SWRCB) complies with PRC Section 10002. As will be evident upon review, the attached flow recommendations are intended to supplement, but not replace, current administrative records.  The attached flow recommendations should not be implemented by the SWRCB without further investigation and consideration of supporting information that would identify constraints or limitations that qualify each recommendation. In addition, as noted on each recommendation, some studies were done many years ago using early methods.  DFG has established an administrative file in the Water Branch that contains the resource documents cited in the flow recommendations.

Flows and Fishes in the Sacramento-San Joaquin Delta

Delta Stewardship Council (Delta Council) | August 1st, 2015

Record-low counts of Delta smelt at a time of persistent drought underscore the importance and challenges of managing freshwater flows for the benefit of fishes in the Sa

Record-low counts of Delta smelt at a time of persistent drought underscore the importance and challenges of managing freshwater flows for the benefit of fishes in the Sacramento-San Joaquin Delta while also meeting human demands for water. Understanding the effects of water flows on fishes is central to understanding how the Delta ecosystem functions and is key to achieving the state’s coequal goals of “providing a more reliable water supply for California and protecting, restoring and enhancing the Delta ecosystem … in a manner that protects and enhances … the values of Delta as an evolving place”. The economic, ecological, and social costs of scientific uncertainty in water management controversies are significant - and to some degree unavoidable. Scientific findings that relate fishes and flows increasingly guide decisions on how to manage flows for the well-being of threatened or endangered species in the Delta. Many studies – and management decisions – rely on correlations between water flows and fish populations. But the decisions warrant fuller understanding of precisely how the flows affect the fishes. Knowledge of these underlying mechanisms is likely to facilitate adaptive management by clarifying uncertainty and risk, by creating specific expectations for outcomes and by strengthening testable hypotheses. This report therefore recommends, first and foremost (there are other recommendations as well), redoubling effects to identify causes and effects concerning fishes and flows in the Delta.