Left Out in Drought: California Fish Impacts of the California Drought on Freshwater Ecosystems

Pacific Institute | September 7th, 2022

California is deep into the third year of another major drought. Rural and urban areas again face water use restrictions and financial losses. Less water and hotter tempe

California is deep into the third year of another major drought. Rural and urban areas again face water use restrictions and financial losses. Less water and hotter temperatures also stress ecosystems, increasing the prevalence of wildfires, air pollution, dry streambeds, and loss of wildlife. Impacts to rural and urban areas frequently mask the disproportionate ecological impacts of the drought and the related policy and management responses that have exacerbated those impacts. The lack of acknowledgement and de- prioritization of ecosystem water needs during drought has led to insufficient actions taken to protect the natural systems on which we all depend.

Lessons from California’s 2012–2016 Drought

American Society of Civil Engineers (ASCE) | October 1st, 2018

California’s 5-year drought has ended, even as its aftermath lingers. From 2012–2016 much or all of California was under severe drought conditions, with gre

California’s 5-year drought has ended, even as its aftermath lingers. From 2012–2016 much or all of California was under severe drought conditions, with greatly diminished precipitation, snowpack, and streamflow and higher temperatures. Water shortages to forests, aquatic ecosystems, hydroelectric power plants, rural drinking water supplies, agriculture, and cities caused billions of dollars in economic losses, killed millions of forest trees, brought several fish species closer to extinction, and caused inconvenience and some expense to millions of households and businesses. The drought also brought innovations and improvements in water management, some of which will better prepare California for future droughts. This paper summarizes the magnitude and impacts of the 2012–2016 California drought. The paper then reviews innovations arising from the drought in the larger historical context of water management in California. Lessons for California and for modern drought management are then discussed. Droughts in modern, well-managed water systems serving globalized economies need not be economically catastrophic, but will always have impacts and challenges, particularly for native ecosystems. In California and every other water system, droughts usefully expose weaknesses and inadequate preparation in water management. In this regard for California, managers of ecosystems and small rural water supplies had the most to learn.

Letter from National Marine Fisheries Service: Re: Proposed Modification to the Annual Review Schedule Required as Part of the Reasonable and Prudent Alternative in the National Marine Fisheries Service’s 2009 Biological Opinion on the Coordinated Long-term Operation of the Central Valley Project and State Water Project (June 30, 2016)

Delta Stewardship Council (Delta Council) | June 30th, 2016

Letter from U.S. Bureau of Reclamation: Proposed Modification to the Annual Review Schedule Required as Part of the Reasonable and Prudent Alternative in the National Marine Fisheries Service’s 2009 Biological Opinion on the Coordinated Long-term Operation of the Central Valley Project and State Water Project (April 25, 2016)

Delta Stewardship Council (Delta Council) | April 25th, 2016

Letter to State Water Board re: Flow Criteria that use Percent of Unimpaired Flow

Delta Stewardship Council (Delta Council) | May 22nd, 2012

The proposed use of percent of unimpaired flow is a step toward improving the outlook for fish and other wildlife utilizing the San Joaquin River and its tributaries. Fal

The proposed use of percent of unimpaired flow is a step toward improving the outlook for fish and other wildlife utilizing the San Joaquin River and its tributaries. Fall-run Chinook salmon are likely to benefit from February-through-June flows that are more natural in timing and variability than current flows. Compared with the existing maze of flow standards for the San Joaquin River and its tributaries, unimpaired flow comes closer to approximating natural flow, and it does so more transparently. Caveats include: (1) flow is but one of many stressors affecting fish and wildlife; (2) the choice of flow criteria and metrics needs to serve the broader needs of ecosystems as well as individual species; (3) a chosen percentage of unimpaired flow may fall short of the minimum needed by fish and wildlife in some years; and (4) such critical years are likely to become more common as Sierra Nevada snowpacks diminish as a consequence of climate change. This qualified endorsement is based on our reading of the “Technical Report on the Scientific Basis for Alternative San Joaquin River Flow and Southern Delta Salinity Objectives” (State Water Resources Control Board, February 2012).

Linkage of In Vitro Assay Results With In Vivo End Points, Phases 1 and 2

San Francisco Estuary Institute (SFEI) | April 3rd, 2017

Our results clearly show that it is possible to establish linkages between the screening level in in vitro assays and higher order endpoints in fish that are infl

Our results clearly show that it is possible to establish linkages between the screening level in in vitro assays and higher order endpoints in fish that are influenced by estrogen, such as growth and gonadal sex differentiation (Table 1). As expected, the in vitro responses are the most sensitive endpoints tested and using them as a monitoring tool can provide a margin of safety for aquatic organisms that may be more sensitive to estrogenic chemicals than Menidia. Moreover, the margin of safety provided, represented by the ratio of in vivo to in vitro EC50s ranged from 0.9 to 9 for the potent estrogen E2 to 1.2 for E1 and 2.4 to 3.4 for NP (Table 1). There were no significant effects on growth, but merely trends, by any of the chemicals tested, suggesting that a higher “n” may be required to see appropriate effects on this endpoint. Using more concentrations for in vivo tests can refine these ratios.

Linking river management to species conservation using dynamic landscape-scale models

River Research and Applications (Wiley) | March 23rd, 2012

Efforts to conserve stream and river biota could benefit from tools that allow managers to evaluate landscape-scale changes in species distributions in response to water

Efforts to conserve stream and river biota could benefit from tools that allow managers to evaluate landscape-scale changes in species distributions in response to water management decisions. We present a framework and methods for integrating hydrology, geographic context and metapopulation processes to simulate effects of changes in streamflow on fish occupancy dynamics across a landscape of interconnected stream segments. We illustrate this approach using a 482 km2 catchment in the southeastern US supporting 50 or more stream fish species. A spatially distributed, deterministic and physically based hydrologic model is used to simulate daily streamflow for sub-basins composing the catchment. We use geographic data to characterize stream segments with respect to channel size, confinement, position and connectedness within the stream network. Simulated streamflow dynamics are then applied to model fish metapopulation dynamics in stream segments, using hypothesized effects of streamflow magnitude and variability on population processes, conditioned by channel characteristics. The resulting time series simulate spatially explicit, annual changes in species occurrences or assemblage metrics (e.g. species richness) across the catchment as outcomes of management scenarios. Sensitivity analyses using alternative, plausible links between streamflow components and metapopulation processes, or allowing for alternative modes of fish dispersal, demonstrate large effects of ecological uncertainty on model outcomes and highlight needed research and monitoring. Nonetheless, with uncertainties explicitly acknowledged, dynamic, landscape-scale simulations may prove useful for quantitatively comparing river management alternatives with respect to species conservation.

Listen to the River: An Independent Review of the CVPIA Fisheries Program

U.S. Bureau of Reclamation (USBR) | December 12th, 2008

In 1992 Congress directed the Department of Interior to develop and implement a program that makes “all reasonable efforts” to ensure and sustain on a long-term basis

In 1992 Congress directed the Department of Interior to develop and implement a program that makes “all reasonable efforts” to ensure and sustain on a long-term basis a doubling of the number of naturally produced anadromous fish in Central Valley rivers and streams by 2002. Doubling did not happen by the legislative goal of 2002, or by 2008, nor is it likely to ever occur unless renewed commitments and improvements are made to the CVPIA program. The specific “doubling” mission itself may make little scientific or policy sense, especially within the time frames demanded. Yet it is also far from clear that the agencies have done what is possible and necessary to improve freshwater conditions to help these species weather environmental variability, halt their decline and begin rebuilding in a sustainable way. A number of the most serious impediments to survival and recovery are not being effectively addressed, especially in terms of the overall design and operation of the Central Valley Project system. Underlying this independent review of the CVPIA anadromous fish program, asked for by the federal agencies, is the question why the CVPIA program has not been successful in achieving its mission. In this report, we identify scientific, institutional and programmatic obstacles to the success of the CVPIA, drawing conclusions from the information provided. Based on these conclusions, we make recommendations to Reclamation and the Service on how these obstacles might be overcome.

Local hydraulics influence habitat selection and swimming behavior in adult California Central Valley Chinook salmon at a large river confluence

Fisheries Research (Elsevier) | February 2nd, 2023

Long-term Monitoring of Pollutants in Fish and Mussels Documents Major Improvements and Persistent Problems

California State Water Resources Control Board (SWRCB) | December 1st, 2007

Of the 390 sites sampled between 1998 and 2003, 32 percent fell into the “low” contamination category. These sites were scattered throughout the state, with

Of the 390 sites sampled between 1998 and 2003, 32 percent fell into the “low” contamination category. These sites were scattered throughout the state, with a particular prevalence in the Sierra Nevada and the area north of San Diego. Unfortunately, the Delta region had relatively few sites with low concentration of pollutants. In general, PCB and DDT levels in fish and mussels across California have declined greatly since the 1970s, and many species have bounced back in response to the decline in DDT levels. However, the report also found that present concentrations of pollutants in fish collected from many California water bodies are high enough to cause concern for possible effects on human health and to have a significant impact on the fishing beneficial use. The report found that fish in 68 percent of the water bodies sampled have “moderate to very high levels of mercury or persistent organics (such as PCBs and organochlorinated pesticides like DDT).” Consumption advisories exist for only a fraction of the water bodies likely to need them. Many water bodies with elevated contaminant levels in fish are near population centers and are popular for fishing. Furthermore, subsistence fishing is increasing, and consumption of contaminated fish is an environmental justice issue.