Environmental Water Transactions in the Colorado River Basin: A Closer Look

Stanford University | November 14th, 2018

Over the last 30 years, the voluntary transfer of water and water rights for environmental uses has become a recognized strategy for restoring streamflow in the Western

Over the last 30 years, the voluntary transfer of water and water rights for environmental uses has become a recognized strategy for restoring streamflow in the Western United States. Historically, taking water out of a stream was a legally required element of an appropriative water right. Water rights holders who left all or a portion of their right instream to enhance fish populations, riparian habitat or recreation, risked forfeiture or diminishment of their water right. Beginning in the 1980’s, state laws began to recognize both the appropriation of new water rights for instream use and to allow the transfer and amendment of existing appropriative rights for those uses. Click here for previous report.

Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river

Environmental Biology of Fishes (Springer) | June 6th, 2008

We reared juvenile Chinook salmon for two consecutive flood seasons within various habitats of the Cosumnes River and its floodplain to compare fish growth in river and

We reared juvenile Chinook salmon for two consecutive flood seasons within various habitats of the Cosumnes River and its floodplain to compare fish growth in river and floodplain habitats. Fish were placed in enclosures during times when wild salmon would naturally be rearing in floodplain habitats. We found significant differences in growth rates between salmon reared in floodplain and river enclosures. Salmon reared in seasonally inundated habitats with annual terrestrial vegetation experienced higher growth rates than those reared in a perennial pond on the floodplain. Growth of fish in the non-tidal river upstream of the floodplain varied with flow in the river. When flows were high, there was little growth and high mortality, but when the flows were low and clear, the fish grew rapidly. Fish displayed very poor growth in tidally influenced river habitat below the floodplain, a habitat type to which juveniles are commonly displaced during high flow events due to a lack of channel complexity in the main-stem river. Overall, ephemeral floodplain habitats supported higher growth rates for juvenile Chinook salmon than more permanent habitats in either the floodplain or river. Variable responses in both growth and mortality, however, indicate the importance of providing habitat complexity for juvenile salmon in floodplain reaches of streams, so fish can find optimal places for rearing under different flow conditions.

Establishing ecological thresholds and targets for groundwater management

Nature Portfolio (Springer Nature) | April 3rd, 2024

Groundwater is critical for many ecosystems, yet groundwater requirements for dependent ecosystems are rarely accounted for during water and conservation planning. Here w

Groundwater is critical for many ecosystems, yet groundwater requirements for dependent ecosystems are rarely accounted for during water and conservation planning. Here we compile 38 years of Landsat-derived normalized difference vegetation index (NDVI) to evaluate groundwater-dependent vegetation responses to changes in depth to groundwater (DTG) across California. To maximize applicability, we standardized raw NDVI and DTG values using Z scores to identify groundwater thresholds, groundwater targets and map potential drought refugia across a diversity of biomes and local conditions. Groundwater thresholds were analysed for vegetation impacts where ZNDVI dropped below −1. ZDTG thresholds and targets were then evaluated with respect to groundwater-dependent vegetation in different condition classes and rooting depths. ZNDVI scores were applied statewide to identify potential drought refugia supported by groundwater. Our approach provides a simple and robust methodology for water and conservation practitioners to support ecosystem water needs so biodiversity and sustainable water-management goals can be achieved.

Estimated Ground-Water Discharge by Evapotranspiration from Death Valley, California, 1997–2001

U.S. Geological Survey (USGS) | July 1st, 2003

Estuarine Habitat Use by White Sturgeon (Acipenser transmontanus)

University of California, Davis (UC Davis) | December 1st, 2020

White Sturgeon (Acipenser transmontanus), a species of concern in the San Francisco Estuary, is in relatively low abundance because of a variety of factors. The purpose o

White Sturgeon (Acipenser transmontanus), a species of concern in the San Francisco Estuary, is in relatively low abundance because of a variety of factors. The purpose of our study was to identify the estuarine habitat used by White Sturgeon to aid in the conservation and management of the species locally and across its range. We seasonally sampled sub-adult and adult White Sturgeon in the central estuary using setlines across a habitat gradient representative of three primary structural elements: shallow wetland channel (mean sample depth = 2 m), shallow open-water shoal (mean sample depth = 2 m), and deep open-water channel (mean sample depth = 7 m). We found that the shallow open-water shoal and deep open-water channel habitats were consistently occupied by White Sturgeon in spring, summer, and fall across highly variable water quality conditions, whereas the shallow wetland channel habitat was essentially unoccupied. We conclude that sub-adult and adult White Sturgeon inhabit estuaries in at least spring, summer, and fall and that small, shallow wetland channels are relatively unoccupied.

Estuary-wide Data Repository for Delta Environmental Data to Understand a California Estuary Poster (2017)

San Francisco Estuary Institute (SFEI) | July 1st, 2017

The Sacramento-San Joaquin Delta (Delta) has some of the most pressing water supply and natural resource management issues facing California. The Delta Environmental Da

The Sacramento-San Joaquin Delta (Delta) has some of the most pressing water supply and natural resource management issues facing California. The Delta Environmental Data for the Understanding a California Estuary (DEDUCE), a collaborative project building upon the 2014 Environmental Data Summit vision, initiated a forum to integrate disparate data from multiple sources along with legacy data not uploaded to any of the State’s data-sharing systems. DEDUCE collected legacy toxic contaminant data from the Delta according to rigorous business rules, uploaded the data to the expanded estuary-wide data repository, and established design standards to exchange datasets with the California Environmental Data Exchange Network (CEDEN), a contributor to the US Environmental Protection Agency’s Water Quality Exchange (WQX). This data integration effort liberated accurate, accessible, and synthesized data for scientists and decision-makers as a foundation to inform management actions with the best available science

Estuary-Wide Data Repository for the Delta Environmental Data to Understand a California Estuary

San Francisco Estuary Institute (SFEI) | July 1st, 2017

The Sacramento-San Joaquin Delta (Delta) is the backdrop for some of the most pressing water supply and natural resource management issues facing California. To navigate

The Sacramento-San Joaquin Delta (Delta) is the backdrop for some of the most pressing water supply and natural resource management issues facing California. To navigate such matters comprehensively with transparency, and rigor, it is important to ensure broad dissemination of data. An Environmental Data Summit held in 2014 created a new era in information management and knowledge discoveries, and shed light on challenges associated with the use of disparate datasets. The Delta Environmental Data for the Understanding a California Estuary (DEDUCE), a collaborative project, builds upon the Data Summit vision and initiated a forum to integrate disparate data from multiple sources and legacy data that are currently not in any of the State’s data sharing systems. DEDUCE expanded the existing infrastructure to house water quality data from the Delta to address management questions by identifying and collecting high priority data according to rigorous business rules and mapping these data to a central system. This important step of harmonizing the data improves its interoperability and increases the access to and exchange of high-quality environmental data. DEDUCE facilitates the upload, aggregation and display of data in tools such as those created under the auspices of the California Water Quality Monitoring Council, including EcoAtlas and My Water Quality Portals, and CD3: Contaminant Data Display and Download tool for accessing and visualizing data comparable to State standards. DEDUCE achieved collecting and uploading the legacy and toxic contaminant data, and established design standards to exchange future datasets from the initial data storage or database to California Environmental Data Exchange Network (CEDEN). This data integration effort created accurate, accessible, and synthesized data for scientists and decision-makers as a foundation to inform management actions with the best available science.

Evaluating a Laboratory Flume Microbiome as a Window into Natural Riverbed Biogeochemistry

Frontiers in Water (Frontiers) | March 18th, 2021

Riverbeds are hotspots for microbially-mediated reactions that exhibit pronounced variability in space and time. It is challenging to resolve biogeochemical mechanisms i

Riverbeds are hotspots for microbially-mediated reactions that exhibit pronounced variability in space and time. It is challenging to resolve biogeochemical mechanisms in natural riverbeds, as uncontrolled settings complicate data collection and interpretation. To overcome these challenges, laboratory flumes are often used as proxies for natural riverbed systems. Flumes capture spatiotemporal variability and thus allow for controlled investigations of riverbed biogeochemistry. These investigations implicitly rely on the assumption that the flume microbiome is similar to the microbiome of natural riverbeds. However, this assumption has not been tested and it is unknown how the microbiome of a flume compares to natural aquatic settings, including riverbeds. To evaluate the fundamental assumption that a flume hosts a microbiome similar to natural riverbed systems, we used 16s rRNA gene sequencing and publicly available data to compare the sediment microbiome of a single large laboratory flume to a wide variety of natural ecosystems including lake and marine sediments, river, lake, hyporheic, soil, and marine water, and bank and wetland soils. Richness and Shannon diversity metrics, analyses of variance, Bray-Curtis dissimilarity, and analysis of the common microbiomes between flume and river sediment all indicated that the flume microbiome more closely resembled natural riverbed sediments than other ecosystems, supporting the use of flume experiments for investigating natural microbially-mediated biogeochemical processes in riverbeds.

Evaluating historical changes in a mussel bed community in northern California

Nature Portfolio (Springer Nature) | January 14th, 2025

Evaluating the environmental impact of cleaning the North Pacific Garbage Patch

Nature Portfolio (Springer Nature) | May 27th, 2025