San Francisco Bay

Effects of Tidal Wetland Restoration on Fish: A Suite of Conceptual Models

California Department of Water Resources (DWR) | November 2nd, 2017

Fishes native to the Sacramento-San Joaquin Delta and Suisun Marsh have historically had access to a complex mosaic of dendritic channels, large tule marshes, floodplain

Fishes native to the Sacramento-San Joaquin Delta and Suisun Marsh have historically had access to a complex mosaic of dendritic channels, large tule marshes, floodplains, and riparian woodlands. After the Gold Rush, that habitat was rapidly and drastically altered, and today several native fish species occur in record low numbers. Although many other stressors also contributed to population declines, habitat restoration is a major component of strategies to reverse the trend. Programs such as the Fish Restoration Program particularly emphasize restoration of tidal wetlands and associated shallow subtidal habitat and strive to restore and learn in an adaptive management context. Conceptual models, therefore, are necessary to plan both the restoration and the monitoring and evaluation of restoration actions.

Efficient Water Use in California: Water Rights, Water Districts, and Water Transfers

Rand Corporation (Rand) | November 13th, 1978

Elevation and Opportunity in the Delta: Restoring the Right Thing in the Right Place

San Francisco Estuary Institute (SFEI) | May 31st, 2022

A future Sacramento-San Joaquin Delta and Suisun Marsh (“Delta” herein) that supports healthy ecosystems and native species, while also meeting flood risk reduction,

A future Sacramento-San Joaquin Delta and Suisun Marsh (“Delta” herein) that supports healthy ecosystems and native species, while also meeting flood risk reduction, water supply, water quality, carbon sequestration, economic, and cultural objectives, requires that appropriate restoration and management actions be taken in the right place at the right time. Geographic setting affects the potential opportunities available—not all actions are suitable everywhere. Physical factors determining what types of activities are appropriate now and in the future include a site’s elevation, degree of tidal and fluvial influence, salinity, soil type, and local effects of climate change, which all vary spatially across the Delta. While there has been considerable progress over the last several decades, continued acceleration of the pace and scale of enhancement actions appropriate to landscape position is needed. Understanding the physical template is necessary for developing strategies that move beyond opportunistic restoration, support resilience over time, and have the potential to connect and magnify benefits across the larger landscape.

Emergency Drought Barriers

Delta Stewardship Council (Delta Council) | April 26th, 2022

Emergency Measures to Provde Water Resources in California and Improve Disaster Response in Certain Areas

The White House | January 24th, 2025

Emerging PFAS Trends in Water and Sediment from San Francisco Bay

San Francisco Estuary Institute (SFEI) | August 14th, 2025

Per- and polyfluoroalkyl substances (PFAS) are a diverse class of persistent compounds, including several that are bioaccumulative and known or suspected to be toxic. The

Per- and polyfluoroalkyl substances (PFAS) are a diverse class of persistent compounds, including several that are bioaccumulative and known or suspected to be toxic. These unique compounds have widespread uses across consumer, commercial, and industrial products, resulting in widespread occurrence in humans, the environment, and wildlife across the globe. Within San Francisco Bay, the RMP has monitored PFAS across the Bay ecosystem, beginning in 2004 with various biota and since expanding to sediment, surface water, stormwater, and wastewater. These studies found PFAS throughout the Bay, especially in sport fish, where concentrations are of potential concern for human health and led to a classification of PFAS as High Concern for the Bay under the RMP tiered risk-based framework for emerging contaminants.  This study examined Bay sediment and surface water to continue to build our understanding of the occurrence, fate, and risks of PFAS to ecological and human health. Using a targeted method, 40 PFAS were analyzed in Bay sediment collected in three monitoring cruises from 2017 to 2023, and Bay water collected from 2021 to 2023 during both the dry and wet seasons. The Total Oxidizable Precursor (TOP) assay was also used to supplement these findings by indirectly measuring unknown perfluoroalkyl acid (PFAA) precursors of detectable PFAS. This additional information aids in elucidating the broader levels of PFAS present in samples to better evaluate the exposure and risk to the Bay. 

Emerging understanding of the potential role of seagrass and kelp as an ocean acidification management tool in California

California Ocean Science Trust (OST) | January 2nd, 2018

This report was produced by the OPC-SAT working group and Ocean Science Trust on behalf of the Ocean Protection Council (OPC) and the broader community of California man

This report was produced by the OPC-SAT working group and Ocean Science Trust on behalf of the Ocean Protection Council (OPC) and the broader community of California managers with the aim of: • communicating emerging scientific understanding of the ability of seagrass and macroalgae (kelps) to ameliorate ocean acidification (OA) in a California-specific context, • summarizing knowledge gaps and opportunities for filling them through research and monitoring, and • providing guidance on next steps for the State as it considers future nature-based actions to reduce the negative impacts of OA in California and beyond.

Empirical and Experimental Analyses of Secondary Louver Efficiency at the Tracy Fish Collection Facility: March 1996 to November 1997

U.S. Bureau of Reclamation (USBR) | January 30th, 2004

Empirical Models of Shallow Groundwater and Multi-Hazard Flood Forecasts as Sea-Levels Rise

American Geophysical Union (AGU) | February 8th, 2025

Knowledge of coastal hydrogeology and hazards as groundwater responds to sea-level rise (SLR) can be improved through installation of shallow groundwater monitoring piezo

Knowledge of coastal hydrogeology and hazards as groundwater responds to sea-level rise (SLR) can be improved through installation of shallow groundwater monitoring piezometers and continuous observations. Interpolation of site data enables mapping of the present-day state of groundwater elevation, depth to groundwater (DTW), their temporal statistical variation, and differing spatial responses to tides and rainfall. Future DTW and its variability can be projected under increments of SLR, with assumptions and caveats, to show where and when episodic and/or permanent inundation can be expected. This methodology is outlined in a case study of Dunedin, New Zealand, which enabled comparison of rising groundwater's contribution to pluvial flooding and groundwater emergence with coastal inundation. Changes in relative land exposure with SLR shows evolution in flood hazard from current pluvial-dominated events, into “flooding from below” and groundwater emergence, in advance of any overland coastal inundation. Dunedin exemplifies how groundwater transfers effects of SLR surprisingly far inland, but the lowest-lying or shoreline-proximal suburbs are not necessarily the most vulnerable. Unlike coastal inundation, rising groundwater is unconstrained by protective topography and presents as a creeping hazard, or contributor to hazards such as pluvial flooding, which can be widespread, occurring already and difficult to defend against. The empirical models contain assumptions and uncertainties important to the veracity of results and application. While conservative (“risk averse”) and a compromise from computationally expensive numerical solutions, their value is in providing the spatial and temporal precision needed for multi-source hazard assessment and holistic adaptive planning.

Endangered and Threatened Species: Status for the San Francisco Bay-Delta Distinct Population Segment of the Longfin Smelt

U.S. Fish and Wildlife Service (FWS) | February 27th, 2023