San Francisco Bay

Municipal Stormwater Management Spending in California: Data Extraction, Compilation, and Analysis

Environmental Management (Springer) | March 23rd, 2022

Communities in the U.S. fund stormwater management programs to reduce flooding and improve and protect water quality. Few studies have attempted to quantify municipal sto

Communities in the U.S. fund stormwater management programs to reduce flooding and improve and protect water quality. Few studies have attempted to quantify municipal storwmater management expenditures. This task is important given efforts to meet increasing water quality standards and develop new revenue sources. The purpose of this study was to evaluate trends in municipal stormwater management expenditures across the state of California. The study identified and compiled publicly-available data on reported stormwater expenditures (spending) and budgets for local governments in California. Data were extracted from annual reports for over 160 public agencies. A standardized rubric of activities was developed and used to create a first-of-its-kind database of municipal stormwater budgets and expenditures. The results indicated that there is over $700 million in annual municipal stormwater spending, but this total does not represent all spending due to gaps in publicly-available data. Counties and flood control districts often have the largest total expenditures in a region, but in aggregate cities reported more spending statewide. Available data are not sufficient to adequately evaluate whether current spending meets regulatory requirements. Additionally, publicly-available data are inconsistent across geographic regions regulated by different agencies. The analysis offers a template for improved cost reporting of stormwater programs in U.S. municipalities, which can help answer key questions such as the sufficiency of current funding. Future research can use the method to evaluate spending in other states and regions, evaluate trends over time to improve outcomes, and refine the spending categories based on examples from other states. Click here for related post at UC Davis site California WaterBlog

Napa County Baseline Data Report, Chapter 16, Groundwater Hydrology

Napa County | November 30th, 2005

This chapter summarizes the basic groundwater hydrology of Napa County and documents the construction of a local integrated groundwater model. The groundwater hydrology a

This chapter summarizes the basic groundwater hydrology of Napa County and documents the construction of a local integrated groundwater model. The groundwater hydrology analysis and model development were designed to establish a baseline of existing conditions to support countywide programs.

Napa County Comprehensive Groundwater Monitoring Program 2016 Annual Report and GASGEM Update

Napa County | March 15th, 2017

A Napa County Groundwater Monitoring Plan 2013 (Plan) was prepared to formalize and augment groundwater monitoring efforts conducted as part of a Comprehensive Groundwate

A Napa County Groundwater Monitoring Plan 2013 (Plan) was prepared to formalize and augment groundwater monitoring efforts conducted as part of a Comprehensive Groundwater Monitoring Program. The Plan recommended annual reports on groundwater conditions and modifications to the countywide groundwater monitoring program as needed. This 2016 Annual Report is the third such report submitted to the Napa County Board of Supervisors.

Napa Valley Subbasin Groundwater Sustainability Plan

Napa County | January 31st, 2022

National Marine Fisheries Service Biological Opinion for the Long-Term Operations of the Central Valley Project and State Water Project

National Marine Fisheries Service (NMFS) | June 3rd, 2009

The purpose of this document is to present NOAA’s National Marine Fisheries Service’s (NMFS) biological and conference opinion (Opinion), about whether the U.S. Burea

The purpose of this document is to present NOAA’s National Marine Fisheries Service’s (NMFS) biological and conference opinion (Opinion), about whether the U.S. Bureau of Reclamation’s (Reclamation) proposed long-term operations of the Central Valley Project (CVP), operated in coordination with the State Water Project (SWP; hereafter referred to as CVP/SWP operations, the proposed action, or the project), is likely to jeopardize the continued existence of the following species: Endangered Sacramento River winter-run Chinook salmon (Oncorhynchus tshawytscha, hereafter referred to as winter-run) Threatened Central Valley spring-run Chinook salmon (O. tshawytscha, hereafter referred to as spring-run) Threatened Central Valley (CV) steelhead (O. mykiss) Threatened Central California Coast (CCC) steelhead (O. mykiss) Threatened Southern Distinct Population Segment (DPS) of North American green sturgeon (Acipenser medirostris, hereafter referred to as Southern DPS of green sturgeon) Endangered Southern Resident killer whales (Orcinus orca, hereafter referred to as Southern Residents) or destroy or adversely modify the designated critical habitat of the above salmon and steelhead species, or proposed critical habitat for Southern DPS of green sturgeon. This Opinion is based on the best scientific and commercial information available.

Native and alien fishes in a California estuarine marsh: twenty-one years of changing assemblages

American Fisheries Society (AFS) | September 30th, 2002

We used monthly otter trawling and beach seining to sample the fishes of Suisun Marsh in the San Francisco Estuary from 1979 to 1999. We collected nearly 173,000 fish, mo

We used monthly otter trawling and beach seining to sample the fishes of Suisun Marsh in the San Francisco Estuary from 1979 to 1999. We collected nearly 173,000 fish, mostly young of the year, representing 28 native species and 25 alien species. Catch data were related to temperature, salinity, water transparency, and several measures of freshwater inflow into the marsh. Species abundance and distribution within the marsh were the product of several interacting factors: (1) the timing and place of reproduction of the abundant resident species, (2) past reproductive success, (3) habitat differences among sloughs, and (4) physiological tolerance. We did not find consistent groups of potentially interacting species, although some native species showed weak concordance in abundance. The lack of persistent fish assemblages is related to the naturally fluctuating environmental conditions of the estuary, the overall decline in fish abundance through time, and the frequent invasions of alien fishes and invertebrates. Our results suggest that the fish assemblages in Suisun Marsh will continue to be unpredictable until estuarine processes approach their historic range of variability and alien invasions are halted.

Natural Resources Defense Council v. Kempthorne, Order Granting in Part and Denying in Part Plaintiffs’ Motion for Summary Judgment

United States District Court, Eastern District of California | May 7th, 2007

This case concerns the effect on a threatened species of fish, the Delta smelt (Hypomesus transpacificus) , of the coordinated operation of the federally managed Central

This case concerns the effect on a threatened species of fish, the Delta smelt (Hypomesus transpacificus) , of the coordinated operation of the federally managed Central Valley Project ("CVP") and the State of California's State Water Project *2 ("SWP"), among the world's largest water diversion projects. Both projects divert large volumes of water from the California Bay (Sacramento - San Joaquin) Delta ("Delta") and use the Delta to store water.

Nature-based solutions extend the lifespan of a regional levee system under climate change

Nature Portfolio (Springer Nature) | May 9th, 2025

Near-Field Receiving-Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California

U.S. Geological Survey (USGS) | November 6th, 2019

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica), clam reproductive activity, and benthic macroinvertebrate co

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in south San Francisco Bay, Calif. This report includes the data collected by U.S. Geological Survey (USGS) scientists for the period January 2018 to December 2018. These append to long-term datasets extending back to 1974. A major focus of the report is an integrated description of the 2018 data within the context of the longer, multi-decadal dataset. This dataset supports the City of Palo Alto’s Near-Field Receiving-Water Monitoring Program, initiated in 1994. Significant reductions in silver and copper concentrations in both sediment and M. petalum occurred at the site in the 1980s following the implementation by PARWQCP of advanced wastewater treatment and source control measures. Since the 1990s, concentrations of these elements appear to have stabilized at concentrations somewhat above (silver [Ag]) or near (copper [Cu]) regional background concentrations. Data for other metals, including chromium (Cr), mercury (Hg), nickel (Ni), selenium (Se), and zinc (Zn), have been collected since 1994. Over this period, concentrations of these elements have remained relatively constant, aside from seasonal variation that is common to all elements. In 2018, concentrations of silver and copper in M. petalum varied seasonally in response to a combination of site-specific metal exposures and annual growth and reproduction, as reported previously. Seasonal patterns for other elements, including Cr, Ni, Zn, Hg, and Se, were generally similar in timing and magnitude as those for Ag and Cu. This record suggests that legacy contamination and regional-scale factors now largely control sedimentary and bioavailable concentrations of silver and copper, as well as other elements of regulatory interest, at the Palo Alto site. Analyses of the benthic community structure of a mudflat in south San Francisco Bay over a 40-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinel clam, M. petalum, from the same area. Analysis of M. petalum shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable (2018), with almost all animals initiating reproduction in the fall and spawning the following spring. The entire infaunal community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that indicates a more stable community that is subjected to fewer stressors. In addition, two of the opportunistic species (Ampelisca abdita and Streblospio benedicti) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals; both species had short-lived rebounds in abundance in 2008, 2009, and 2010 and showed signs of increasing abundance in 2018. Heteromastus filiformis (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance and, in the last several years before 2008, showed a stable population. H. filiformis abundance increased slightly in 2011–2012 and returned to pre-2011 numbers in 2018. An unidentified disturbance occurred on the mudflat in early 2008 that resulted in the loss of the benthic animals, except for deep-dwelling animals like M. petalum. However, within two months of this event, animals returned to the mudflat. The resilience of the community suggested that the disturbance was not caused by a persistent toxin or anoxia. The reproductive mode of most species that were present in 2018 was indicative of species that were available either as pelagic larvae or as mobile adults. Although oviparous species were lower in number in this group, the authors hypothesize that these species will return slowly as more species move back into the area. The use of functional ecology was highlighted in the 2018 benthic community data, which showed that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today, community data show a mix of species that consume the sediment, or filter feed, have pelagic larvae that must survive landing on the sediment, and those that brood their young. USGS scientists view the 2008 disturbance event as a response by the infaunal community to an episodic natural stressor (possibly sediment accretion or a pulse of freshwater), in contrast to the long-term recovery from metal contamination. We will compare this recovery to the long-term recovery observed after the 1970s when the decline in sediment pollutants was the dominating factor.

Nearly a Million Californians Lack Access to Safe Drinking Water

State of California | July 26th, 2022

Our audit of the State Water Board’s efforts to help provide Californians with safe drinking water highlighted the following: More than 370 of the State’s water

Our audit of the State Water Board’s efforts to help provide Californians with safe drinking water highlighted the following: More than 370 of the State’s water systems, serving nearly a million Californians, exceed the maximum contaminant levels for substances that are harmful to human health. More than 150 of these systems have been failing for at least five years. Hundreds of additional water systems are currently at risk of failing. The State Water Board has not prioritized the processing of water systems’ funding applications so that the systems can improve their water quality. Over the past five years, the average length of time for water systems to complete their applications and receive funding nearly doubled, from 17 months to 33 months. The State Water Board has not established performance goals or metrics related to its cumbersome application process. Although the State Water Board provides water systems with technical assistance to plan their improvements and apply for funds, it has not adequately monitored the performance of the technical assistance providers with which it contracts. The State Water Board needs to better ensure that its staff and its contracted providers do not duplicate each other’s outreach efforts.