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Geohydrological Characterization, Water-Chemistry, and Ground-Water Flow Simulation Model of the Sonoma Valley Area, Sonoma County, California

U.S. Geological Survey (USGS) | December 14th, 2006

Summary

Sonoma County is in the northern part of the greater San Francisco Bay region, an area of Northern California that has experienced rapid population growth and accelerated

Sonoma County is in the northern part of the greater San Francisco Bay region, an area of Northern California that has experienced rapid population growth and accelerated urbanization in response to economic expansion over the past few decades. The large increase in population and concomitant changes in land use within Sonoma County require reassessment of the water resources and how best to manage them for optimal utilization over the next few decades. Most basins in the county currently rely on a combination of Russian River water and native ground water to meet demand. Recycled water is used on a limited basis. In addition, water conservation programs have been implemented and are being expanded. The Sonoma Valley is a well-defined hydrologic basin in southeastern Sonoma County. The basin has some areas of declining ground-water levels, potential water-quality problems from seawater intrusion and upwelling of geothermal waters, and ground-water/surface-water interaction. Location of the Study Area The study area is located approximately 30 miles (mi) northeast of San Francisco and includes the entire Sonoma Creek watershed in southeastern Sonoma County, California (fig. 1). The study focused on the area of the valley floor and the adjacent hills where most of the urban development and irrigated agriculture have been occurring. The watershed includes approximately 166 square miles (mi2) of land that drains by way of Sonoma Creek and its tributaries to San Pablo Bay (fig. 2), which is the northern arm of the San Francisco Bay. The Sonoma Mountains form the southwestern side of the watershed and the Mayacmas Mountains form the northeastern side. Between these two mountain ranges lies the northwest trending elongate depression of Sonoma Valley, which extends roughly 20 mi from the shore of San Pablo Bay to near Kenwood (fig. 2). Purpose and Scope: The U.S. Geological Survey (USGS), in cooperation with the Sonoma County Water Agency (SCWA), undertook this study to evaluate the ground-water resources of Sonoma Valley and to develop a tool to better understand and manage the ground-water system. The goals of the study were to update the geohydrologic characterization of the study area; to provide a current assessment of hydrologic conditions, including a description of historical ground-water level and waterquality changes; and to provide water-supply agencies with a ground-water flow model that can be used as a planning tool for water-resources assessment and management. To meet the objectives of this study, four principal tasks were identified: (1) evaluation of existing geohydrologic, geophysical, and geochemical data; (2) collection and analysis of new geohydrologic data, including subsurface lithologic data, gravity measurements, ground-water levels, and streamflow gains and losses; (3) collection and analysis of new water chemistry, temperature, and isotopic data; and (4) development a ground-water flow model. This report provides a geologic and hydrologic description of the area, presents selected hydrologic data collected from the 1970s to 2004, quantifies historical changes in the ground-water system, documents a ground-water flow simulation model, and presents an interpretation of surface geophysical data that help define the geometry of the ground-water reservoir.

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Geohydrology and Water Chemistry of the Alexander Valley, Sonoma County, California

U.S. Geological Survey (USGS) | January 12th, 2006

Summary

This study of the geohydrology and water chemistry of the Alexander Valley, California, was done to provide an improved scientific basis for addressing emerging wate

This study of the geohydrology and water chemistry of the Alexander Valley, California, was done to provide an improved scientific basis for addressing emerging water-management issues, including potential increases in water demand and changes in flows in the Russian River. The study tasks included (1) evaluation of existing geohydrological, geophysi- cal, and geochemical data; (2) collection and analysis of new geohydrologic data, including subsurface lithologic data, ground-water levels, and streamflow records; and (3) collection and analysis of new water-chemistry data. The estimated total water use for the Alexander Valley for 1999 was approximately 15,800 acre-feet. About 13,500 acre-feet of this amount was for agricultural use, primarily vineyards, and about 2,300 acre-feet was for municipal/industrial use. Ground water is the main source of water supply for this area. The main sources of ground water in the Alexander Valley are the Quaternary alluvial deposits, the Glen Ellen Formation, and the Sonoma Volcanics. The alluvial units, where sufficiently thick and saturated, comprise the best aquifer in the study area. Average recharge to the Alexander Valley is estimated from a simple, basinwide water budget. On the basis of an estimated annual average of 298,000 acre-feet of precipitation, 160,000 acre-feet of runoff, and 113,000 to 133,000 acre-feet of evapotranspiration, about 5,000 to 25,000 acre-feet per year is available for ground-water recharge. Because this estimate is based on differences between large numbers, there is significant uncertainty in this recharge estimate. Long-term changes in ground-water levels are evident in parts of the study area, but because of the sparse network and lack of data on well construction and lithology, it is uncertain if any significant changes have occurred in the northern part of the study area since 1980. In the southern half of the study area, ground-water levels generally were lower at the end of the 2002 irrigation season than at the end of the 1980 season, which suggests that a greater amount of ground water is being pumped in the southern half of the study area in recent years compared with that pumped in the early 1980s. Water-chemistry data for samples collected from 11 wells during 2002–04 indicate that water quality in the study area generally is acceptable for potable use. Two wells, however, each contained one constituent (241 μg/L of manganese and 1,350 μg/L of boron) in excess of the recommended standards for drinking water (50 μg/L and 1,000 μg/L, respectively). The chemical composition of water from most of the wells sampled for major ions plot as a mixed cation-bicarbon- ate, magnesium-bicarbonate, or calcium-bicarbonate type water. The ionic composition of the historical and recent samples from wells in the Alexander Valley is similar to that of the historical surface-water samples collected from the Russian River near Healdsburg. This suggests a similar source of water, particularly for wells that are less than 200 feet total depth and perforated in Quaternary alluvial deposits. Water from deeper, non-alluvial wells may contain slightly higher concentrations of sodium as a result of cation exchange. Water samples collected from several wells over an approximately 30–year period suggest a progressive change in water chemistry over time. Samples from the southern part of the valley show a trend towards higher ionic concentrations and increasing concentrations of particular constituents such as sulfate.

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Geologic Analysis, Ventura River Watershed

Daniel B. Stephens & Associates, Inc. (DBS&A) | March 3rd, 2020

Summary

This memorandum summarizes geologic analysis performed for the Ventura River Watershed (VRW) by Daniel B. Stephens & Associates, Inc. (DBS&A) in support of nume

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Glenn County | Hamilton City Flood Damage Reduction and Ecosystem Restoration Project

Nature Conservancy | January 14th, 2016

Summary

Although not designed explicitly as a groundwater recharge project, the Hamilton City Project is expected to benefit local groundwater supplies. Having an additio

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Ground-water and surface-water relations along the Mojave River, Southern California

U.S. Geological Survey (USGS) | July 1st, 1996

Summary

The Mojave River and the associated floodplain aquifer are important water supplies in the Mojave Desert of Southern California. The river and aquifer, in many areas,

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Ground-Water Hydrology of the Upper Klamath Basin, Oregon and California

U.S. Geological Survey (USGS) | April 15th, 2010

Summary

The upper Klamath Basin spans the California-Oregon border from the flank of the Cascade Range eastward to the Basin and Range Province, and encompasses the Klamath River

The upper Klamath Basin spans the California-Oregon border from the flank of the Cascade Range eastward to the Basin and Range Province, and encompasses the Klamath River drainage basin above Iron Gate Dam. Most of the basin is semiarid, but the Cascade Range and uplands in the interior and eastern parts of the basin receive on average more than 30 inches of precipitation per year. The basin has several perennial streams with mean annual discharges of hundreds of cubic feet per second, and the Klamath River at Iron Gate Dam, which represents drainage from the entire upper basin, has a mean annual discharge of about 2,100 cubic feet per second. The basin once contained three large lakes: Upper and Lower Klamath Lakes and Tule Lake, each of which covered areas of 100 to 150 square miles, including extensive marginal wetlands. Lower Klamath Lake and Tule Lake have been mostly drained, and the former lake beds are now cultivated. Upper Klamath Lake remains, and is an important source of irrigation water. Much of the wetland surrounding Upper Klamath Lake has been diked and drained, although efforts are underway to restore large areas. Upper Klamath Lake and the remaining parts of Lower Klamath and Tule Lakes provide important wildlife habitat, and parts of each are included in the Klamath Basin National Wildlife Refuges Complex. The upper Klamath Basin has a substantial regional ground-water flow system. The late Tertiary to Quaternary volcanic rocks that underlie the region are generally permeable, with transmissivity estimates ranging from 1,000 to 100,000 feet squared per day, and compose a system of variously interconnected aquifers. Interbedded with the volcanic rocks are late Tertiary sedimentary rocks composed primarily of fine-grained lake sediments and basin-filling deposits. These sedimentary deposits have generally low permeability, are not good aquifers, and probably restrict ground-water movement in some areas. The regional ground-water system is underlain and bounded on the east and west by older Tertiary volcanic and sedimentary rocks that have generally low permeability. Eight regional-scale hydrogeologic units are defined in the upper Klamath Basin on the basis of surficial geology and subsurface data. Ground water flows from recharge areas in the Cascade Range and upland areas in the basin interior and eastern margins toward stream valleys and interior subbasins. Ground water discharges to streams throughout the basin, and most streams have some component of ground water (baseflow). Some streams, however, are predominantly ground-water fed and have relatively constant flows throughout the year. Large amounts of ground water discharge in the Wood River subbasin, the lower Williamson River area, and along the margin of the Cascade Range. Much of the inflow to Upper Klamath Lake can be attributed to ground-water discharge to streams and major spring complexes within a dozen or so miles from the lake. This large component of ground water buffers the lake somewhat from climate cycles. There are also ground-water discharge areas in the eastern parts of the basin, for example in the upper Williamson and Sprague River subbasins and in the Lost River subbasin at Bonanza Springs. Irrigated agriculture is an integral part of the economy of the upper Klamath Basin. Although estimates vary somewhat, roughly 500,000 acres are irrigated in the upper Klamath Basin, about 190,000 acres of which are part of the Bureau of Reclamation Klamath Project. Most of this land is irrigated with surface water. Ground water has been used for many decades to irrigate areas where surface water is not available, for example outside of irrigation districts and stream valleys. Ground water has also been used as a supplemental source of water in areas where surface water supplies are limited and during droughts. Ground water use for irrigation has increased in recent years due to drought and shifts in surface-water allocation from irrigation to instream uses. The shifts in surface-water allocation have resulted from efforts to improve habitat for fish listed under the Federal Endangered Species Act. The ground-water system in the upper Klamath Basin responds to external stresses such as climate cycles, pumping, lake stage variations, and canal operation. This response is manifest as fluctuations in hydraulic head (as represented by fluctuations in the water-table surface) and variations in ground-water discharge to springs. Basinwide, decadal-scale climate cycles are the largest factor controlling head and discharge fluctuations. Climate-driven water-table fluctuations of more than 12 feet have been observed near the Range, and decadal-scale fluctuations of 5 feet are common throughout the basin. Ground-water discharge to springs and streams varies basinwide in response to decadal-scale climate cycles. The response of the ground-water system to pumping is generally largest in areas where pumping occurs. Annual drawdown and recovery cycles of 1 to 10 feet are common in pumping areas. Long-term drawdown effects, where the water table has reached or is attempting to reach a new level in equilibrium with the pumping, are apparent in parts of the basin. Since 2001, ground-water use in the upper Klamath Basin has increased by about 50 percent. Much of this increase has occurred in the area in and around the Bureau of Reclamation Klamath Project, roughly tripling ground-water pumping in that area. This focused increase in pumping has resulted in ground-water level declines in the pumped aquifer in excess of 10 to 15 feet over a large part of the Project between 2001 and 2004. If pumping rates of recent years are continued, the aquifer could achieve a new equilibrium; however, the final configuration of the water table (depth to water) and the spatial and temporal distribution of the resulting effects to streams are unknown. Historical water-level data suggest that the water table should recover from recent declines if pumping is reduced to pre-2001 rates.

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Ground-Water Resources of Honey Lake Valley, Lassen County, California, and Washoe County, Nevada

U.S. Geological Survey (USGS) | January 8th, 1990

Summary

Honey Lake Valley is a 2,200-square-mile, northwest-trending, topographically closed basin about 35 miles northwest of Reno, Nevada. Unconsolidated basin-fill deposits o

Honey Lake Valley is a 2,200-square-mile, northwest-trending, topographically closed basin about 35 miles northwest of Reno, Nevada. Unconsolidated basin-fill deposits on the valley floor and fractured volcanic rocks in the northern and eastern uplands are the principal aquifers. Ground water in the Nevada part of the basin is being considered as a potential source of public supply to the Reno area. This report describes the ground-water resources of the basin and the potential hydrologic effects of ground-water development in its eastern part. During an average year, about 1.1 million acre-feet of precipitation falls on the 1,700-square-mile study area within the valley, and an estimated 86,000 acre-feet enters the study area as streamflow in the Susan River and Long Valley Creek. Almost 90 percent of this water runs off, evaporates, or is transpired by plants before it can infiltrate and become ground-water recharge; this includes about 130,000 acre-feet per year that reaches Honey Lake as surface-water inflow. About 130,000 acre-feet recharges the aquifer system annually, about 40 percent by direct infiltration of precipitation over the study area and about 60 percent by infiltration of streamflow and irrigation water. Balancing this is an equal amount of ground-water discharge, of which about 65 percent evaporates from the water table or is transpired by phreatophytes, about 30 percent is withdrawn from wells, and about 5 percent leaves the basin as subsurface outflow to the east. A ground-water flow model of the eastern part of the study area, where withdrawals for public supply have been proposed, was used to evaluate components of the water budget and to estimate the long-term hydrologic effects of hypothetical increased development. Results of the evaluation indicate conditions under which a new equilibrium would be established if 15,000 acre-feet of water were withdrawn from the Fish Springs Ranch area annually. The model indicates that, as a result of such an increase in pumpage, water levels would decline more than 100 feet from present (1988) levels in the vicinity of the pumping, and as much as 40 feet at the California-Nevada State line. Evapotranspiration and subsurface outflow to the east would each be reduced by about 60 percent, but hydrologic effects would be minimal at the western boundary of the flow-model area (just east of Honey Lake). Within the modeled area, the simulation indicates that the increased withdrawals would cause the net flow of ground water eastward across the State line to increase from about 700 acre-feet per year to about 2,300 acre-feet per year.

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Ground-Water-Level Monitoring and the Importance of Long-Term Water-Level Data

U.S. Geological Survey (USGS) | July 12th, 2001

Summary

Ground-water is among the Nation’s most precious natural resources. Measurements of water levels in wells provide the most fundamental indicator of the status of this r

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Groundwater and Stream Interaction in California's Central Valley: Insights for Sustainable Groundwater Management

Nature Conservancy | June 16th, 2016

Summary

Sustainable water management requires ensuring ecosystem water needs are met in balance with water needs for people. The Nature Conservancy (TNC) is working across Califo

Sustainable water management requires ensuring ecosystem water needs are met in balance with water needs for people. The Nature Conservancy (TNC) is working across California to demonstrate how to achieve this balance in the context of integrated water management programs. Sustainable water management must also recognize that surface water and groundwater resources are interconnected and that proper management of these resources includes understanding this interaction and managing the resources accordingly. Management of groundwater and surface water systems in an integrated manner is impeded by California water law and policy, which has separate rules and regulations for managing groundwater and surface water resources. The Central Valley of California is the hub of the state’s water supply system. An extensive network of dams and canals supplies surface water to users within the Central Valley as well as to the San Francisco Bay Area, the Central Coast, and Southern California. Analysis of information collected in this study reveals that just within the Central Valley, agricultural and urban sectors use an average of 13 million acre-feet (MAF) of surface water and over 8 MAF of groundwater per year. Approximately 2 MAF of water is exported annually to areas outside the Central Valley. Because the availability of surface water supplies varies significantly from year to year, groundwater use also varies considerably on annual basis. In an average year, groundwater meets about 40% of the state’s water demand and up to 60% or more during droughts, when groundwater provides a water supply buffer against economic and environmental harm from water scarcity (DWR, 2014). In some areas, groundwater provides 100% of the supply, even in wetter years, and then is heavily pumped during drought. In other locations, where surface water supplies are reasonably abundant, groundwater use may be relatively light during wetter years, but more heavily pumped during drier years when surface water supplies are cut back. Accordingly, the impact of groundwater use is much more evident during dry years, and especially in drought conditions. A case in point is the drought condition of 2013-15. This drought is exerting significant stress on the state’s water supply. The surface water deliveries have been reduced dramatically, to near zero in many regions; therefore, agricultural and municipal water users in the Central Valley and other parts of the state that normally rely on surface water for much of their supplies, are now greatly increasing their use of groundwater to meet their needs. A 2014 UC Davis report indicates that expected increase in Central Valley groundwater pumping would be in the range of 20% to 25%, during the 2014 irrigation season. To the authors’ knowledge, there are no reports of actual estimates of increase in groundwater use for the recent drought conditions. The long-term increase in groundwater pumping and especially recent drought related increases in pumping would translate into significantly more adverse impacts on the surface water and stream systems, as well as groundwater dependent ecosystems. In addition, this increase in groundwater pumping could potentially result in more land subsidence throughout the valley. The drought has also affected the irrigated lands under cultivation. A November 2014 DWR publication “Public Update for Drought Response” 3 reported that based on NASA satellite imagery, approximately 700,000 acres of land were estimated idled between 2011 and 2014. Majority of these acreages idled are reported to be due to the drought conditions, although, some were also due to normal agronomic practices, crop markets, and other reasons. This report provides the results of a number of analyses and evaluations of Central Valley hydrologic conditions using the California Central Valley Groundwater-Surface Water Simulation Model (C2VSim). The study examines important hydrologic and operational characteristics and behaviors of the California’s Central Valley water system during the historical development in the Valley. In addition, the study presents results of model simulations conducted to assess potential impacts of several water management scenarios. The results of this study contribute significantly to the understanding of how management of groundwater and surface water are interrelated and will inform the development of more effective integrated water management in the Central Valley and throughout California. The interaction between groundwater and surface water resources has been evaluated and illustrated by many researchers. As early as 1941, Theis (1941) documented the hydraulic connection between stream and aquifer systems and quantitatively described the general behavior of stream-groundwater systems. Many others, including Glover & Balmer (1954) and Hantush (1965) built on Theis’ work, which demonstrated and confirmed the basic principles of hydraulic connection between stream and aquifer systems. In recent years, significant work has been conducted regarding regional impacts of groundwater pumping and operation on regional surface water systems. For example, the recent USGS study (Barlow & Leake, 2012) presents original findings of the stream-aquifer interaction in the context of sustainable groundwater management. In an effort to quantify the interaction between the groundwater and the surface water system, DWR’s C2VSim model was employed in this study. The C2VSim model was originally developed in 1990 for DWR, U. S. Bureau of Reclamation (USBR), and California State Water Resources Control Board (SWRCB) as the Central Valley Groundwater and Surface water Model (CVGSM) (James M. Montgomery Consulting Engineers, 1990a). Subsequently, the model was enhanced through numerous key applications, including the Central Valley Project Improvement Act – Programmatic Environmental Impact Statement (CVPIA-PEIS). In 2005, the CVGSM model was upgraded to the newly developed Integrated Water Flow Model (IWFM) platform, and was renamed the C2VSim model. The detailed features of the model are described and presented in Section 2 of this report. The C2VSim model is a leading Central Valley-wide integrated hydrologic model adopted by DWR and many other regional and state-wide agencies, as well as non-governmental organizations (NGOs) to evaluate various water management scenarios throughout the Valley. This report is organized in six sections: Section 1: Provides the background information and lays out the goals and objectives of this study. Section 2: Provides information on the status of C2VSim model, refinements made during this study, and assumptions on the modeling analysis. Section 3: Discusses simulation of the historical hydrologic conditions in the Central Valley. Section 4: Provides the assumptions and results of the existing baseline conditions, assuming that no changes to the facilities and their operations, as well as water management actions, take place over the course of a predetermined hydrologic condition. Section 5: Provides a description of three water management scenarios that may have major impacts on the future of surface water and groundwater interaction in Central Valley. Results of simulation of these management scenarios are presented and discussed in detail. Section 6: Provides conclusions from this study and a list of recommendations for future work.

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Groundwater Contributions of Flow, Nitrate, and Dissolved Organic Carbon to the Lower San Joaquin River, California, 2006–08

U.S. Geological Survey (USGS) | October 8th, 2013

Summary

The influence of groundwater on surface-water quality in the San Joaquin River, California, was examined for a 59-mile reach from the confluence with Salt Slough to Verna

The influence of groundwater on surface-water quality in the San Joaquin River, California, was examined for a 59-mile reach from the confluence with Salt Slough to Vernalis. The primary objective of this study was to quantify the rate of groundwater discharged to the lower San Joaquin River and the contribution of nitrate and dissolved organic carbon concentrations to the river. Multiple lines of evidence from four independent approaches were used to characterize groundwater contributions of nitrogen and dissolved organic carbon. Monitoring wells (in-stream and bank wells), streambed synoptic surveys (stream water and shallow groundwater), longitudinal profile surveys by boat (continuous water-quality parameters in the stream), and modeling (MODFLOW and VS2DH) provided a combination of temporal, spatial, quantitative, and qualitative evidence of groundwater contributions to the river and the associated quality. Monitoring wells in nested clusters in the streambed (in-stream wells) and on both banks (bank wells) along the river were monitored monthly from September 2006 to January 2009. Nitrate concentrations in the bank wells ranged from less than detection—that is, less than 0.01 milligrams per liter (mg/L) as nitrogen (N)—to approximately 13 mg/L as N. Nitrate was not detected at 17 of 26 monitoring wells during the study period. Dissolved organic carbon concentrations among monitoring wells were highly variable, but they generally ranged from 1 to 4 mg/L. In a previous study, 14 bank wells were sampled once in 1988 following their original installation. With few exceptions, specific conductivity and nitrate concentrations measured in this study were virtually identical to those measured 20 years ago. Streambed synoptic measurements were made by using a temporarily installed drive-point piezometer at 113 distinct transects across the stream during 4 sampling events. Nitrate concentrations exceeded the detection limit of 0.01 mg/L as N in 5 percent of groundwater samples collected from the in-stream wells as part of the synoptic surveys. Only 7 of the 113 cross-sectional transects had nitrate concentrations greater than 1 mg/L as N. In contrast, surface waters in the San Joaquin River tended to have nitrate concentrations in the 1–3 mg/L as N range. A zone of lower oxygen (less than 2 mg/L) in the streambed could limit nitrate contributions from regional groundwater flow because nitrate can be converted to nitrogen gas within this zone. Appreciable concentrations of ammonium (average concentration was 1.92 mg/L as N, and 95th percentile was 10.34 mg/L as N) in the shallow groundwater, believed to originate from anoxic mineralization of streambed sediments, could contribute nitrogen to the overlying stream as nitrate following in-stream nitrification, however. Dissolved organic carbon concentrations were highly variable in the shallow groundwater below the river (1 to 6 ft below streambed) and generally ranged between 1 and 5 mg/L, but had maximum concentrations in the 15–25 mg/L range. The longitudinal profile surveys were not particularly useful in identifying groundwater discharge areas. However, the longitudinal approach described in this report was useful as a baseline survey of measured water-quality parameters and for identifying tributary inflows that affect surface-water concentrations of nitrate. Results of the calibrated MODFLOW model indicated that the simulated groundwater discharge rate was approximately 1.0 cubic foot per second per mile (cfs/mi), and the predominant horizontal groundwater flow direction between the deep bank wells was westward beneath the river. The modeled (VS2DH) flux values (river gain versus river loss) were calculated for the irrigation and non-irrigation season, and these fluxes were an order of magnitude less than those from MODFLOW. During the irrigation season, the average river gain was 0.11 cfs/mi, and the average river loss was ?0.05 cfs/mi. During the non-irrigation season, the average river gain was 0.10 cfs/mi, and the average river loss was 0.08 cfs/mi.

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Geohydrological Characterization, Water-Chemistry, and Ground-Water Flow Simulation Model of the Sonoma Valley Area, Sonoma County, California

Geohydrology and Water Chemistry of the Alexander Valley, Sonoma County, California

Geologic Analysis, Ventura River Watershed

Glenn County | Hamilton City Flood Damage Reduction and Ecosystem Restoration Project

Ground-water and surface-water relations along the Mojave River, Southern California

Ground-Water Hydrology of the Upper Klamath Basin, Oregon and California

Ground-Water Resources of Honey Lake Valley, Lassen County, California, and Washoe County, Nevada

Ground-Water-Level Monitoring and the Importance of Long-Term Water-Level Data

Groundwater and Stream Interaction in California's Central Valley: Insights for Sustainable Groundwater Management

Groundwater Contributions of Flow, Nitrate, and Dissolved Organic Carbon to the Lower San Joaquin River, California, 2006–08

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