Sacramento River Temperature Task Group Annual Report of Activities October 1, 2017 through September 30, 2018

Delta Stewardship Council (Delta Council) | November 21st, 2018

Sacramento River Temperature Task Group Annual Report of Activities, October 1, 2015 through September 30, 2016

Delta Stewardship Council (Delta Council) | October 31st, 2016

Sacramento-San Joaquin Delta Historical Ecology Investigation: Exploring Pattern and Process

San Francisco Estuary Institute (SFEI) | September 12th, 2012

In 2012, SFEI researchers (in collaboration with the CA Department of Fish and Wildlife) completed a historical ecology study of the Sacramento-San Joaquin Delta. The

In 2012, SFEI researchers (in collaboration with the CA Department of Fish and Wildlife) completed a historical ecology study of the Sacramento-San Joaquin Delta. The project improves understanding of what the Delta looked like and how it functioned prior to the significant modification that has occurred over the last 160 years. This historical reconstruction documents patterns of variation and extent of habitat types throughout the Delta for improved understanding of species support functions and controlling physical processes within the native landscape. Knowing how different parts of the vast historical Delta looked and functioned provides needed information for future restoration strategies.

Sacramento/San Joaquin Delta Dilemma

Assembly Office of Research (AOR) | January 1st, 1982

Salinity Changes the Dynamics of Pyrethroid Toxicity in Terms of Behavioral Effects on Newly Hatched Delta Smelt Larvae

Toxics (MDPI) | February 20th, 2021

Salinity can interact with organic compounds and modulate their toxicity. Studies have shown that the fraction of pyrethroid insecticides in the aqueous phase increases w

Salinity can interact with organic compounds and modulate their toxicity. Studies have shown that the fraction of pyrethroid insecticides in the aqueous phase increases with increasing salinity, potentially increasing the risk of exposure for aquatic organisms at higher salinities. In the San Francisco Bay Delta (SFBD) estuary, pyrethroid concentrations increase during the rainy season, coinciding with the spawning season of Delta Smelt (Hypomesus transpacificus), an endangered, endemic fish. Furthermore, salinity intrusion in the SFBD is exacerbated by global climate change, which may change the dynamics of pyrethroid toxicity on aquatic animals. Therefore, examining the effect of salinity on the sublethal toxicity of pyrethroids is essential for risk assessments, especially during the early life stages of estuarine fishes. To address this, we investigated behavioral effects of permethrin and bifenthrin at three environmentally relevant concentrations across a salinity gradient (0.5, 2 and 6 PSU) on Delta Smelt yolk-sac larvae. Our results suggest that environmentally relevant concentrations of pyrethroids can perturb Delta Smelt larvae behavior even at the lowest concentrations (<1 ng/L) and that salinity can change the dynamic of pyrethroid toxicity in terms of behavioral effects, especially for bifenthrin, where salinity was positively correlated with anti-thigmotaxis at each concentration.

Salinity Incursion and Water Resources, Appendix to Bulletin No. 76, Delta Water Facilities

California Department of Water Resources (DWR) | April 16th, 1962

Data and analyses contained in this appendix were utilized to determine the present and future quantity and quality of water supplies within the Delta and to determine

Data and analyses contained in this appendix were utilized to determine the present and future quantity and quality of water supplies within the Delta and to determine the conditions under which the State Water Facilities must operate within the Delta with the various facilities proposed in Bulletin No. 76 constructed therein. In general, the conditions imposed result from conservative assumptions of available water supply and Delta channel hydraulics.

Salt Tolerance of Crops in the Southern Sacramento-San Joaquin Delta

California State Water Resources Control Board (SWRCB) | January 5th, 2010

The purpose of this report is to research the scientific literature and provide the state of knowledge on subjects that impact crop productivity with saline irrigation wa

The purpose of this report is to research the scientific literature and provide the state of knowledge on subjects that impact crop productivity with saline irrigation water and analyze the existing information from the South Delta and quantify how the various factors influencing the use of saline water applies to conditions in the South Delta. There are five objectives for this study: One of the objectives of this study is the review of existing literature relating to the effect of salinity on a variety of irrigated crops under South Delta conditions, preparation of a comprehensive list of references, and a synopsis of findings from key references. A second objective is the review of the relative strengths and limitations of steady-state and transient models that have been used to determine the suitability of saline water for crop production. As part of this second objective, the strengths, limitations, and assumptions of each model when applied to field conditions are to be presented. The third objective involves the use of soil information to determine and describe the approximate area and nature of saline and drainage-impaired soils; an estimate of the effectiveness of local rainfall in reducing the irrigation requirement; and compiling and evaluating historical crop types, acreages, and evapotranspiration information. The fourth objective is to provide conclusions and recommendations to the State Water Resources Control Board based upon the literature, modeling, and data evaluation.  Among the conclusions and recommendations to be reported the following are considered paramount. (1) Identify significant gaps or uncertainties in the literature and recommend future studies to fill the gaps. (2) Using a steady-state model and appropriate data for the South Delta, estimate the leaching fraction required for salinity control for crops regularly grown on the drainage- and salinity-impaired soils of the South Delta. (3) Using the approach as in (2), recommend a salinity guideline that could provide full protection of the most salt sensitive crop currently grown or suitable to be grown on the drainage- and salinity- impaired soils. The final objective is to present the findings and recommendations in Sacramento to interested stakeholders and representatives of California state agencies.

Salt Water Problem: San Francisco Bay and Delta of Sacramento and San Joaquin Rivers

Association of Industrial Water Users of Contra Costa and Solano Counties | April 12th, 1928

PENETRATION OF SALT WATER IN UPPER BAY AND LOWER RIVER REGiON Under natural conditions, Carquinez Straits marked, approximately, the boundary between salt and fresh

PENETRATION OF SALT WATER IN UPPER BAY AND LOWER RIVER REGiON Under natural conditions, Carquinez Straits marked, approximately, the boundary between salt and fresh water in the upper San Francisco Bay and delta region of the two tributary rivers-the Sacramento and San Joaquin. Ordinarily salt water was present below the straits and fresh water was present above. Native vegetation in the tide marshes was predominantly of salt water types around San Pablo Bay and of fresh water types around Suisun Bay. In tidal waters, into which run fresh water streams of variable flow, there is an ebb and flow of salt water and the zone of mixing will move up and down stream as the fresh water flow increases and decreases. For short intervals in late summer of years of minimum flow, salt water penetrated the lower river and delta region, and in wet seasons the upper bay was fresh, part of the time, to the Golden Gate. This variation in quality of water was not, however, of sufficient duration to affect the characteristic vegetation growth of the regions on each side of the straits, nor to change the designation of Suisun Bay as ordinarily a fresh water body and San Francisco Bay as salt water. The works of man have changed conditions in many ways. The most important changes have been brought about gradualJy,-so slowly as to be hardly noticeable. The dry season of 1918,-when large summer diversions for irrigation in the Sacramento Valley resulted in the sudden penetration of salt water farther upstream than ever known before, at such an early period in summer first brought the salt water problem to public notice. The slow effects of increasing diversions in previous years had escaped notice, but were brought prominently to the attention of the inhabitants of the upper bay and delta regions in this year. Since 1918, the dry years of 1920, 1924- and 1926 have more convincingly demonstrated the importance of the salt water problem. An accurate picture of natural conditions is not possible, because no records have been collected on which such a picture can be based, but very close approximations can be made. The log of the distance traveled by the water barge of the California Hawaiian Sugar Company in going upstream to obtain fresh water has been kept since 1908. These figures give the means of determining approximately the conditions during that period. In 1908 irrigation had been extensively developed in both valleys and conditions then were not natural. For an estimate of earlier conditions we must go to the stream flow records of the tributary streams before important diversions are taken out. It is the practice of the Sugar Company to send the barge upstream until water of approximately 50 to 70 parts per million chlorine is reached. The crew of the barge are equipped with apparatus by which water is analyzed until this degree of purity is reached. Since trips are made nearly every day during the summer months, the record is a very good indication of the point reached by salt water. A summary of the complete records shows the fluctuation of the line between fresh and salt water. Records of the Sugar Company arc attached. (Table 1.) The Sugar Company requires water of great purity. For irrigation, domestic or ordinary industrial uses, water of a lesser degree of purity may be used. A comparison of the point where the Sugar Company's barge is filled with the point where the remaining uses could be satisfied, indicates that from five to ten miles downstream from the place where the barge turns, water could be obtained satisfactory for domestic supply. Making an allowance of 7 1/2 miles in the average records, we find that an average flow of 5,000 second feet in both streams will maintain fresh water at Collinsville; 7,000 second feet will maintain fresh water at the San Francisco-Sacramento ferry. If we sum up the flow of the important tributaries of the Sacramento and San Joaquin rivers at the points where these streams leave the mountains and assume that this flow under natural conditions would have reached the head of the Suisun Bay we will find that at no time in the past ten years would the average monthly flow have been Jess than 5,100 second feet. It is probable, should all streams be running in a natural way, that salt water would have penetrated no farther in this extremely dry period than Antioch, and then only for a few days at a time. It is not possible to make a more detailed study of this condition without making a number of assumptions as to speed of flow from the gaging stations to the head of the bay, and there is little accurate information on which the assumptions may be made. The definite statement that salt water under natural conditions did not penetrate higher upstream than the mouth of the river, except in the driest years and then only for a few days at a time, is warranted. (See Table 2 for monthly flow of tributary streams.) At present salt water reaches Antioch every year, in two-thirds of the years running further upstream. It is to be expected that it will continue to do so in future, even in years of greatest runoff. In other words, the penetration of salt water has become a permanent phenomenon in the lower river region.

Sampling and Analysis Plan for 2016 RMP Status and Trends Bird Egg Monitoring

San Francisco Estuary Institute (SFEI) | February 1st, 2016

The samples will be collected by staff at the USGS Western Ecological Research Center [USGS-WERC] who will procure all necessary egg collection permits. Eggs will then be

The samples will be collected by staff at the USGS Western Ecological Research Center [USGS-WERC] who will procure all necessary egg collection permits. Eggs will then be analyzed for: ● Total mercury (THg) (cormorant eggs at Moss Landing Marine Laboratory-Marine Pollution Studies Lab [MLML-MPSL]; tern eggs at USGS-WERC),  ● Selenium (cormorant and tern eggs at MLML-MPSL),  ● PCBs (cormorant eggs at the California Department of Fish & Wildlife’s Water Pollution Control Laboratory [DFW-WPCL]),  ● PBDEs (cormorant eggs at DFW-WPCL) (NOTE: PBDE analysis in tern eggs was discontinued due to increased USGS costs),  ● PFCs and precursors (cormorant eggs at AXYS Analytical Laboratories), and  ● Halogenated carbazoles (cormorant eggs at Southern Illinois University) NOTE: Carbazole analyses will be done pro bono by SIU for research purposes. Carbazoles are not part of the RMP Status and Trends design. SIU will not measure percent moisture in its samples. Therefore, it is important to make sure that sample weights, prior to analysis, are accurately measured since we will be applying the percent moisture values from other laboratories to their samples. Available data will be used to back-calculate fresh wet weight values for these samples. 

Sampling and Analysis Plan for Microplastic Monitoring in San Francisco Bay and Adjacent National Marine Sanctuaries

San Francisco Estuary Institute (SFEI) | May 31st, 2017

Plastic in the ocean, and more specifically microplastic (particles <5 mm), has been gaining global attention as a pervasive and preventable threat to the health of m

Plastic in the ocean, and more specifically microplastic (particles <5 mm), has been gaining global attention as a pervasive and preventable threat to the health of marine ecosystems. Microplastic is ingested by marine organisms (Wright et al. 2013), and may impact their physiological processes (von Moos et al. 2012; Cole et al. 2013, 2015; Rochman et al. 2013, 2014b; Wright et al. 2013; Watts et al. 2015; Lu et al. 2016; Sussarellu et al. 2016). Microplastic may also contain harmful chemicals such as flame retardants, plasticizers, or dyes (Browne et al. 2013; Fries et al. 2013; Rochman et al. 2013, 2014 a,b), and may provide a substrate for the adsorption of other harmful chemicals in the ocean, like PCBs and DDT (Teuten et al. 2007), which then may be transferred up the food chain (e.g., Farrell and Nelson 2013; Rochman et al. 2014a; Setala et al. 2014). Many scientific questions remain, however, and there is a need for research on the patterns of distribution and uptake of microplastic by organisms in their ocean ecosystems.