Landslide-channel feedbacks amplify channel widening during floods

Nature Portfolio (Springer Nature) | January 24th, 2025

Lessons from the Oroville dam

American Association for the Advancement of Science (AAAS) | March 17th, 2017

California has experienced tremendous amounts of precipitation in the past few months, leading to the wettest year on record (as of mid-rainy season) immediately afte

California has experienced tremendous amounts of precipitation in the past few months, leading to the wettest year on record (as of mid-rainy season) immediately after a 5-year record-setting drought over the region. On 7 February 2017, the Oroville dam, the tallest dam in North America, suffered damage when unexpected sediments, intensified by floods in a drought-stricken area, can substantially affect the operation of hundreds of dams and levees in California.

Making the Most of Water for the Environment: A Functional Flows Approach for California’s Rivers

Public Policy Institute of California (PPIC) | August 25th, 2020

In California, water and land management activities have substantially altered river flows and degraded river channels and their floodplains. The result has been a precip

In California, water and land management activities have substantially altered river flows and degraded river channels and their floodplains. The result has been a precipitous decline in native fish populations, including the collapse of valued salmon fisheries, and widespread imperilment of freshwater biodiversity. Environmental flows—flows in rivers and streams necessary to sustain ecosystem health—are essential to reversing these trends. Yet many rivers in California lack environmental flows. And for those rivers with such protections, environmental flows are typically established at static minimum levels, which fail to preserve the natural seasonal and interannual variability of flow that sustains healthy ecosystems. A new approach to managing environmental water is needed. 

Marsh Sediment in Translation: A Review of Sediment Transport Across a Natural Tidal Salt Marsh in Northern San Francisco Bay

University of California, Davis (UC Davis) | March 15th, 2025

Deposition of inorganic sediment is essential for the sustainability of tidal salt marshes. Understanding variability in sediment sources and the processes of sediment de

Deposition of inorganic sediment is essential for the sustainability of tidal salt marshes. Understanding variability in sediment sources and the processes of sediment delivery to salt marshes are high priorities for decision-makers responsible for managing sediment and conserving and restoring marshes.

Mercury in Abiotic Matrices of Clear Lake, California: Human Health and Ecotoxicological Implications

Ecological Society of America (Wiley) | December 1st, 2008

Mercury (Hg) from Hg mining at Clear Lake, California, USA, has contaminated water and sediments for over 130 years and has the potential to affect human and environmen

Mercury (Hg) from Hg mining at Clear Lake, California, USA, has contaminated water and sediments for over 130 years and has the potential to affect human and environmental health. With total mercury (TotHg) concentrations up to 438 mg/kg (dry mass) in surficial sediments and up to 399 ng/L in lake water, Clear Lake is one of the most Hg-contaminated lakes worldwide. Particulate Hg in surface water near the mine ranges from 10 000 to 64 000 ng/g; TotHg declines exponentially with distance from the Sulphur Bank Mercury Mine. From 1992 to 1998, no significant long-term trends for TotHg or methylmercury (MeHg) in sediments or water were observed, but peaks of both TotHg and MeHg occurred following a 1995 flooding event. Sediments and water exhibit summer/fall maxima and winter/spring minima for MeHg, but not TotHg. Sediment TotHg has not declined significantly a decade after remediation in 1992. At the mine site, aqueous TotHg reached 374 000 ng/L in unfiltered groundwater. Pore water sulfate in sediments varies seasonally from 112 mg/L in summer/fall (when Hg methylation is highest) to 3300 mg/L in winter. While TotHg is exceptionally high in both sediments and water, MeHg is substantially lower than would be expected based on the bulk Hg loading to the lake and in comparison with other sites worldwide. Total mercury in Clear Lake water does not exceed the Safe Drinking Water Act criteria, but it sometimes greatly exceeds human health criteria established by the Great Lakes Initiative, U.S. Environmental Protection Agency water quality guidelines, and the California Toxics Rule criterion. Methylmercury concentrations exceed the Great Lakes Initiative criterion for MeHg in water at some sites only during summer/fall. Relative to ecological health, Clear Lake sediments greatly exceed the National Oceanic and Atmospheric Administration’s benthic fauna Sediment Quality Guidelines for toxic effects, as well as the more concensus-based Threshold Effects Concentration criteria. Based on these criteria, Hg-contaminated sediments and water from Clear Lake are predicted to have some lethal and sublethal effects on specific resident aquatic species. However, based on unique physical and chemical characteristics of the Clear Lake environment, MeHg toxicity may be significantly less than anticipated from the large inorganic Hg loading.

Microplastics in Lake Mead National Recreation Area, USA: Occurrence and biological uptake

PLOS | May 4th, 2020

Microplastics are an environmental contaminant of growing concern, but there is a lack of information about microplastic distribution, persistence, availability, and bio

Microplastics are an environmental contaminant of growing concern, but there is a lack of information about microplastic distribution, persistence, availability, and biological uptake in freshwater systems. This is especially true for large river systems like the Colorado River that spans multiple states through mostly rural and agricultural land use. This study characterized the quantity and morphology of microplastics in different environmental compartments in two large reservoirs along the Colorado River: Lakes Mead and Mohave, within Lake Mead National Recreation Area. To assess microplastic occurrence, surface water and surficial sediment were sampled at a total of nine locations. Sampling locations targeted different sub-basins with varying levels of anthropogenic impact. Las Vegas Wash, a tributary which delivers treated wastewater to Lake Mead, was also sampled. A sediment core (33 cm long, representing approximately 19 years) was extracted from Las Vegas Bay to assess changes in microplastic deposition over time. Striped bass (Morone saxatilis), common carp (Cyprinus carpio), quagga mussels (Dreissena bugensis), and Asian clams (Corbicula fluminea) were sampled at a subset of locations to assess biological uptake of microplastics. Microplastic concentrations were 0.44–9.7 particles/cubic meter at the water surface and 87.5–1,010 particles/kilogram dry weight (kg dw) at the sediment surface. Sediment core concentrations were 220–2,040 particles/kg dw, with no clear increasing or decreasing trend over time. Shellfish microplastic concentrations ranged from 2.7–105 particles/organism, and fish concentrations ranged from 0–19 particles/organism. Fibers were the most abundant particle type found in all sample types. Although sample numbers are small, microplastic concentrations appear to be higher in areas of greater anthropogenic impact. Results from this study improve our understanding of the occurrence and biological uptake of microplastics in Lake Mead National Recreation Area, and help fill existing knowledge gaps on microplastics in freshwater environments in the southwestern U.S.

Multi-box mass balance model of PFOA and PFOS in different regions of San Francisco Bay

Chemosphere (Elsevier) | August 3rd, 2020

We present a model to predict the long-term distribution and concentrations of perfluorooctanoic acid (PFOA) and perfluorooctanesulfonic acid (PFOS) in estuaries comprisi

We present a model to predict the long-term distribution and concentrations of perfluorooctanoic acid (PFOA) and perfluorooctanesulfonic acid (PFOS) in estuaries comprising multiple intercommunicated sub-embayments. To that end, a mass balance model including rate constants and time-varying water inputs was designed to calculate levels of these compounds in water and sediment for every sub-embayment. Subsequently, outflows and tidal water exchanges were used to interconnect the different regions of the estuary. To calculate plausible risks to population, outputs of the model were used as inputs in a previously designed model to simulate concentrations of PFOA and PFOS in a sport fish species (Cymatogaster aggregata). The performance of the model was evaluated by applying it to the specific case of San Francisco Bay, (California, USA), using 2009 sediment and water sampled concentrations of PFOA and PFOS in North, Central and South regions. Concentrations of these compounds in the Bay displayed exponential decreasing trends, but with different shapes depending on region, compound, and compartment assessed. Nearly stable PFOA concentrations were reached after 50 years, while PFOS needed close to 500 years to stabilize in sediment and fish. Afterwards, concentrations stabilize between 4 and 23 pg/g in sediment, between 0.02 and 44 pg/L in water, and between 7 and 104 pg/g wet weight in fish, depending on compound and region. South Bay had the greatest final concentrations of pollutants, regardless of compartment. Fish consumption is safe for most scenarios, but due to model uncertainty, limitations in monthly intake could be established for North and South Bay catches.

Natural infrastructure in sustaining global urban freshwater ecosystem services

Nature Portfolio (Springer Nature) | October 21st, 2021

Rapid urbanization throughout the globe increases demand for fresh water and the ecosystem services associated with it. This need is conventionally met through the constr

Rapid urbanization throughout the globe increases demand for fresh water and the ecosystem services associated with it. This need is conventionally met through the construction of infrastructure. Natural infrastructure solutions have increased to provide freshwater ecosystem services, but little global research has examined the intricate relationships between built and natural infrastructure for providing freshwater ecosystem services to cities across the globe. Using network analysis, here we examine the interrelationships between built and natural infrastructure in 2,113 watersheds for 317 cities worldwide, focusing on four key freshwater ecosystem services: freshwater provision, sediment regulation, flood mitigation and hydropower production. Our results indicate that protected wetlands contribute to sustaining freshwater provision to cities. Forest cover in protected areas can improve the capacity of large dams in reducing sediment loads and producing hydropower, but cities mainly depend on reduced impervious surfaces and more green spaces within urban areas for flood mitigation. Improved understandings of the role of natural infrastructure in urban water networks must underpin strategic decision-making to sustainably provide freshwater ecosystem services to global cities.

Near-Field Receiving-Water Monitoring of Trace Metals and a Benthic Community Near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California

U.S. Geological Survey (USGS) | November 6th, 2019

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica), clam reproductive activity, and benthic macroinvertebrate co

Trace-metal concentrations in sediment and in the clam Macoma petalum (formerly reported as Macoma balthica), clam reproductive activity, and benthic macroinvertebrate community structure were investigated in a mudflat 1 kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant (PARWQCP) in south San Francisco Bay, Calif. This report includes the data collected by U.S. Geological Survey (USGS) scientists for the period January 2018 to December 2018. These append to long-term datasets extending back to 1974. A major focus of the report is an integrated description of the 2018 data within the context of the longer, multi-decadal dataset. This dataset supports the City of Palo Alto’s Near-Field Receiving-Water Monitoring Program, initiated in 1994. Significant reductions in silver and copper concentrations in both sediment and M. petalum occurred at the site in the 1980s following the implementation by PARWQCP of advanced wastewater treatment and source control measures. Since the 1990s, concentrations of these elements appear to have stabilized at concentrations somewhat above (silver [Ag]) or near (copper [Cu]) regional background concentrations. Data for other metals, including chromium (Cr), mercury (Hg), nickel (Ni), selenium (Se), and zinc (Zn), have been collected since 1994. Over this period, concentrations of these elements have remained relatively constant, aside from seasonal variation that is common to all elements. In 2018, concentrations of silver and copper in M. petalum varied seasonally in response to a combination of site-specific metal exposures and annual growth and reproduction, as reported previously. Seasonal patterns for other elements, including Cr, Ni, Zn, Hg, and Se, were generally similar in timing and magnitude as those for Ag and Cu. This record suggests that legacy contamination and regional-scale factors now largely control sedimentary and bioavailable concentrations of silver and copper, as well as other elements of regulatory interest, at the Palo Alto site. Analyses of the benthic community structure of a mudflat in south San Francisco Bay over a 40-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinel clam, M. petalum, from the same area. Analysis of M. petalum shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable (2018), with almost all animals initiating reproduction in the fall and spawning the following spring. The entire infaunal community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that indicates a more stable community that is subjected to fewer stressors. In addition, two of the opportunistic species (Ampelisca abdita and Streblospio benedicti) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals; both species had short-lived rebounds in abundance in 2008, 2009, and 2010 and showed signs of increasing abundance in 2018. Heteromastus filiformis (a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying its eggs on or in the sediment) showed a concurrent increase in dominance and, in the last several years before 2008, showed a stable population. H. filiformis abundance increased slightly in 2011–2012 and returned to pre-2011 numbers in 2018. An unidentified disturbance occurred on the mudflat in early 2008 that resulted in the loss of the benthic animals, except for deep-dwelling animals like M. petalum. However, within two months of this event, animals returned to the mudflat. The resilience of the community suggested that the disturbance was not caused by a persistent toxin or anoxia. The reproductive mode of most species that were present in 2018 was indicative of species that were available either as pelagic larvae or as mobile adults. Although oviparous species were lower in number in this group, the authors hypothesize that these species will return slowly as more species move back into the area. The use of functional ecology was highlighted in the 2018 benthic community data, which showed that the animals that have now returned to the mudflat are those that can respond successfully to a physical, nontoxic disturbance. Today, community data show a mix of species that consume the sediment, or filter feed, have pelagic larvae that must survive landing on the sediment, and those that brood their young. USGS scientists view the 2008 disturbance event as a response by the infaunal community to an episodic natural stressor (possibly sediment accretion or a pulse of freshwater), in contrast to the long-term recovery from metal contamination. We will compare this recovery to the long-term recovery observed after the 1970s when the decline in sediment pollutants was the dominating factor.

New Life for Eroding Shorelines: Beach and Marsh Edge Change in the San Francisco Estuary

San Francisco Estuary Institute (SFEI) | April 1st, 2020

Wind, waves, storms, and changing water levels have reshaped shorelines for millennia and continue to do so today. The current shape of the San Francisco (SF) Estuary sho

Wind, waves, storms, and changing water levels have reshaped shorelines for millennia and continue to do so today. The current shape of the San Francisco (SF) Estuary shoreline is relatively new; 15,000 years ago, the California shoreline was west of the Farallon Islands and 140 meters below its current level (Cohen and Laws 1992, Malamud-Roam et al. 2007). By approximately 6,000 years ago (the end of the last glacial epoch), the sea had risen to nearly its present level and filled what is now San Francisco Bay, allowing marshes to form and maintain themselves (Atwater 1979). More recently, humans have changed the shape of the shoreline. During the 1850s, many marshes expanded extensively due to increased sediment supply from hydraulic mining in the Sierra Nevada (Gilbert 1917, Goals Project 1999). Diking, dredging, and filling of marshes for agricultural and urban development began in the late 19th century and continued through the first half of the 20th century.  Today, humans continue to reshape the shoreline through continued diking, dredging and filling as well as restoration projects, urbanization of watersheds, ferry wakes, and many other means. The most wide-ranging impact of human activity on the shape of shorelines is global climate change caused by greenhouse gas emissions, which is accelerating the rate of sea level rise worldwide (OPC 2018). Sea level rise is likely to cause much more dramatic changes in the shape of shorelines than have been seen in recent centuries. The magnitude and pace of change will depend on the rate of sea level rise, existing shoreline conditions, and the ability of shorelines to adapt.