Tree height explains mortality risk during an intense drought

Nature Portfolio (Springer Nature) | September 26th, 2019

Forest mortality is accelerating due to climate change and the largest trees may be at the greatest risk, threatening critical ecological, economic, and social be

Forest mortality is accelerating due to climate change and the largest trees may be at the greatest risk, threatening critical ecological, economic, and social benefits. Here, we combine high-resolution airborne LiDAR and optical data to track tree-level mortality rates for ~2 million trees in California over 8 years, showing that tree height is the strongest predictor of mortality during extreme drought. Large trees die at twice the rate of small trees and environmental gradients of temperature, water, and competition control the intensity of the height-mortality relationship. These findings suggest that future persistent drought may cause widespread mortality of the largest trees on Earth.

Trends in Fish and Invertebrate Populations of Suisun Marsh January 2017 - December 2017

University of California, Davis (UC Davis) | January 31st, 2019

Suisun Marsh, at the geographic center of the northern San Francisco Estuary, is important habitat for native and non-native fishes. The University of California, Davis,

Suisun Marsh, at the geographic center of the northern San Francisco Estuary, is important habitat for native and non-native fishes. The University of California, Davis, Suisun Marsh Fish Study, in partnership with the California Department of Water Resources (DWR), has systematically monitored the marsh's fish populations since January 1980. The study’s main purpose has been to determine environmental and anthropogenic factors affecting fish distribution and abundance. 

Trends in nitrogen, phosphorus, and sediment concentrations and loads in streams draining to Lake Tahoe, California, Nevada, USA

Science of the Total Environment (Elsevier) | August 19th, 2020

Lake Tahoe, a large freshwater lake of the eastern Sierra Nevada in California and Nevada, has 63 tributaries that are sources of nutrients and sediment to the lake. The

Lake Tahoe, a large freshwater lake of the eastern Sierra Nevada in California and Nevada, has 63 tributaries that are sources of nutrients and sediment to the lake. The Tahoe watershed is relatively small, and the surface area of the lake occupies about 38% of the watershed area (1313 km2). Only about 6% of the watershed is urbanized or residential land, and as part of a plan to maintain water clarity, wastewater is exported out of the basin. The lake's clarity has been diminishing due to algae and fine sediment, prompting development of management plans. Much of the annual discharge and nutrient load to the lake results from snowmelt in the spring and summer months. To understand the relative importance of land use, climate, forest management, and other factors affecting trends in nutrient stream concentrations and loads, a Weighted Regression on Time Discharge and Season (WRTDS) model simulated these trends over a time frame of >25 years (mid-1970s to 2017). All studied locations generally show nitrate concentration and load trending down. Ammonium concentration and load initially trended down then increased continuously after 2005. Some locations show initially decreasing orthophosphate trends, followed by small significant increases in concentration and loads starting around 2000 to 2005. Total Kjeldahl nitrogen, total phosphorus and suspended sediment mostly trended downward. Overall, the trends in various forms of nitrogen were observed at most sites irrespective of the degree of development and indicate a change in ecological conditions is affecting the nitrogen cycle throughout the watershed, most likely attributable to forest aggradation and fire suppression. Ratios of bioavailable nitrogen in the form of nitrate and ammonium to orthophosphate have also trended downward during the period of record suggesting a shift of these streams from phosphorus limited to nitrogen limited.

Tulare Lake Basin Hydrology and Hydrography: A Summary of the Movement of Water and Aquatic Species

U.S. Environmental Protection Agency (EPA) | April 12th, 2007

This report provides a summary of the historic and current hydrology of the Tulare Lake Basin (Basin) and describes past, present and potentiai future movement of water o

This report provides a summary of the historic and current hydrology of the Tulare Lake Basin (Basin) and describes past, present and potentiai future movement of water out of the Basin, and potential movement of bioiogical organisms and toxicants within and outside of the Basin. This study was initiated at the request of the U.S. Environmental Protection Agency (USEPA).

Undelivered Water: Fulfilling the CVPIA promise to Central Valley refuges

U.S. Bureau of Reclamation (USBR) | November 3rd, 2009

The 1992 Central Valley Project Improvement Act transformed California’s federal water management system by providing fish and wildlife a co-equal priority with other u

The 1992 Central Valley Project Improvement Act transformed California’s federal water management system by providing fish and wildlife a co-equal priority with other uses. In so doing, the Act mandated that the federal government establish a program, now known as the Refuge Water Supply Program (RWSP), to manage, secure, and deliver a reliable, clean water supply to serve the wetland habitat needs of nineteen federal, state, and private wildlife refuges in California’s Central Valley. The refuges protect a significant portion of the last remaining 5 percent of the historic Central Valley wetlands and provide birds of the Pacific Flyway habitat during critical periods when no other wetlands habitat may be available. In response to a request from OMB, the Bureau of Reclamation and the Fish and Wildlife Service established an Independent Panel to evaluate the performance of the RWSP component of the Central Valley Project Improvement Act.

Underwater Videographic Observations of Domesticated Delta Smelt in Field Enclosures

U.S. Geological Survey (USGS) | May 24th, 2022

The delta smelt (Hypomesus transpacificus) is a small, euryhaline fish species endemic to the Sacramento–San Joaquin Delta; it is protected under the U.S. and Californi

The delta smelt (Hypomesus transpacificus) is a small, euryhaline fish species endemic to the Sacramento–San Joaquin Delta; it is protected under the U.S. and California Endangered Species Acts, and because of declines in population abundance, the delta smelt may be vulnerable to extinction. The California Department of Water Resources (DWR) is conducting studies to test the viability of using domesticated fish to supplement the wild population of delta smelt. These studies have focused on examining the health and survival of domesticated delta smelt placed inside enclosures (circular cages that are approximately 1.5 meters tall by 1 meter in diameter) into the wild. We completed two parts within this study using underwater cameras inside the enclosures to observe fish behavior and their responses to certain stimuli. In both parts of the study, delta smelt behaviors were broadly categorized into two basic categories: (1) normal and (2) alarm. Normal behavior was characterized as calm, non-polarized, and docile swimming behavior. Alarm behavior was characterized by sudden and rapid darting, polarized frantic swimming activity, and tighter schooling polarization of individuals. The first part of the study took place in a semi-controlled agricultural pond on the campus of the University of California, Davis. At this agricultural pond, we developed methods of observation and documented how fish behaved in response to enclosure disturbances associated with routine cleaning and service that is required during extended field deployments of the enclosures. We observed that delta smelt behavior changed from normal to alarm at the onset of an enclosure service and from alarm to normal within about 2 minutes after the service ended. The second part of the study was completed in cooperation with the DWR. In October 2019, DWR deployed three enclosures in the Sacramento River near Rio Vista, California. To monitor survival rate of delta smelt, DWR permitted us to deploy cameras in one enclosure to document the frequency and duration of alarm behaviors exhibited by delta smelt and the frequency, duration, and intensity of three types of disturbances: (1) noise generated from passing boats, (2) noise generated from the enclosure moving in response to wave energy, and (3) vertical movements of the enclosure generated from wave energy. Alarm behaviors averaged about 2 minutes in duration and occurred most frequently during the evening compared to midday or morning. Each disturbance variable exhibited substantial variability in duration and intensity and occurred least frequently during the morning and evening compared to midday. Alarm behaviors appeared to be most associated with high intensity enclosure noises and vertical movements; however, limited replicate samples prohibited developing a statistical relation. Alarm behaviors did not directly contribute to injury or mortality of individual delta smelt; however, indirect or sublethal effects of alarm behaviors were not examined.

Urban Ecological Planning Guide for Santa Clara Valley

San Francisco Estuary Institute (SFEI) | June 20th, 2019

Like most cities, the urbanized region of Santa Clara Valley is a challenging place for plants and animals to make a home. Largely covered with pavement, crisscrossed by

Like most cities, the urbanized region of Santa Clara Valley is a challenging place for plants and animals to make a home. Largely covered with pavement, crisscrossed by major freeways, and fragmented by a variety of land uses, the urban landscape creates barriers to the movement of wildlife and hostile environments for plants. While a small set of species tolerant of cities (such as pigeons and raccoons) can tolerate these difficult conditions, our cities have the potential to support much greater biodiversity. Urban greening projects are already occurring piecemeal across urban landscapes. Harnessing this momentum can help these efforts build greater benefits for biodiversity and for people.  Urban greening projects may take many forms, such as rain gardens beside roadways; bike trails with vegetated medians; planted and expanded riparian vegetation along stream corridors; and landscaping in corporate campuses, municipal parks and private gardens. While often driven by a narrow set of goals such as stormwater capture, public safety, shade, or beautification, these green spaces can be designed and coordinated to support enhanced biodiversity as well. Rain gardens can support native wetland plants, bike trail medians can support ribbons of wildflowers for native insects, street trees can shade pedestrians and provide acorns for birds and squirrels, and stream revegetation or daylighting projects can provide a reflective place for people and strengthen corridors for regional species movement. While each of these types of projects provides benefits, strategically designing these features to reflect ecologically-minded planning, and where possible, coordinating across the landscape, can provide value for humans and nature alike.  This document provides some of the scientific foundation needed to guide planning for urban biodiversity in the Santa Clara Valley region, grounded in an understanding of landscape history, urban ecology and local setting. It can be used to envision the ecological potential for individual urban greening projects, and to guide their siting, design and implementation. It also can be used to guide coordination of projects across the landscape, with the cooperation of a group of stakeholders (such as multiple agencies, cities and counties). Users of this report may include a wide range of entities, such as local nonprofits, public agencies, city planners, and applicants to the Open Space Authority’s Urban Open Space Grant Program.  This document is not intended to inform all aspects of site-specific planning. Much guidance on these topics is already available, and we reference some of those resources here. Rather, it is intended as a companion to existing materials, to inform a broader vision of how such site-scale projects can fit into the larger fabric of the Santa Clara Valley landscape. This document also recommends appropriate habitats and lists of their associated plants for the region, as well as general guidance on practical considerations related to project implementation. 

Urbanization alters atmospheric dryness through land evapotranspiration

Nature Portfolio (Springer Nature) | September 23rd, 2023

Use of the SmeltCam as an Efficient Fish-Sampling Alternative Within the San Francisco Estuary

University of California, Davis (UC Davis) | June 1st, 2021

Resource managers often rely on long-term monitoring surveys to detect trends in biological data. However, no survey gear is 100% efficient, and many sources of bias can

Resource managers often rely on long-term monitoring surveys to detect trends in biological data. However, no survey gear is 100% efficient, and many sources of bias can be responsible for detecting or not detecting biological trends. The SmeltCam is an imaging apparatus developed as a potential sampling alternative to long-term trawling gear surveys within the San Francisco Estuary, California, to reduce handling stress on sensitive species like the Delta Smelt (Hypomesus transpacificus). Although believed to be a reliable alternative to closed cod-end trawling surveys, no formal test of sampling efficiency has been implemented using the SmeltCam. We used a paired deployment of the SmeltCam and a conventional closed cod-end trawl within the Napa River and San Pablo Bay, a Bayesian binomial N-mixture model, and data simulations to determine the sampling efficiency of both deployed gear types to capture a Delta Smelt surrogate (Northern Anchovy, Engraulis mordax) and to test potential bias in our modeling framework. We found that retention efficiency—a component of detection efficiency that estimates the probability a fish is retained by the gear, conditional on gear contact—was slightly higher using the SmeltCam (mean = 0.58) than the conventional trawl (mean = 0.47, Probability SmeltCam retention efficiency > trawl retention efficiency = 94%). We also found turbidity did not affect the SmeltCam’s retention efficiency, although total fish density during an individual tow improved the trawl’s retention efficiency. Simulations also showed the binomial model was accurate when model assumptions were met. Collectively, our results suggest the SmeltCam to be a reliable alternative to sampling with conventional trawling gear, but future tests are needed to confirm whether the SmeltCam is as reliable when applied to taxa other than Northern Anchovy over a greater range of conditions.

USGS Science at Work in the Delta Estuary

U.S. Geological Survey (USGS) | November 19th, 2013

The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 m

The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 million California residents and vast farmlands, as well as key habitat for birds, fish, and other wildlife. To help ensure the health of this crucial estuary, the U.S. Geological Survey, in close cooperation with partner agencies and organizations, is providing science essential to addressing societal issues associated with water quantity and quality, sediment transportation, environmental contamination, animal health and status, habitat restoration, hazards, ground subsidence, and climate change.