Hydrodynamic Model Development Report: Sacramento-San Joaquin River Delta and Suisun Bay (Water Year 2016)

San Francisco Estuary Institute (SFEI) | December 13th, 2019

This report describes work related to hydrodynamic model development for the San Francisco Bay-Delta Estuary, undertaken as part of a broader eort to develop and apply co

This report describes work related to hydrodynamic model development for the San Francisco Bay-Delta Estuary, undertaken as part of a broader eort to develop and apply coupled biogeochemical-hydrodynamic models to inform nutrient management decisions. The primary intended application of the hydrodynamic model output is for use as input to an offline coupled biogeochemical model to simulate a wide range of state variables and processes, including: advective and dispersive transport, nutrient transformations, phytoplankton production, benthic and pelagic grazing, sediment diagenesis, and oxygen cycling.

Hydrodynamic Simulations for Trash Loading in Southern California’s Dense Urbanized Watersheds

American Society of Civil Engineers (ASCE) | May 25th, 2024

Hydrodynamics and habitat interact to structure fish communities within terminal channels of a tidal freshwater delta

Ecological Society of America (Wiley) | January 13th, 2023

Terminal channels were historically a common feature of tidal delta ecosystems but have become increasingly rare as landscapes have been modified. Tidal hydrodynamics are

Terminal channels were historically a common feature of tidal delta ecosystems but have become increasingly rare as landscapes have been modified. Tidal hydrodynamics are a defining feature in tidal terminal channel ecosystems from which native aquatic communities have evolved. However, few studies have explored the relationship between fish community structure and hydrodynamics in these tidal terminal channel ecosystems. We sampled fish communities throughout a network of terminal channels within the northeasternmost region of the San Francisco Estuary to determine the relationship between fish community structure and hydrodynamics within these environments. We collected two years (2017 and 2018) of fish community samples using gill nets and analyzed data using multivariate community analyses and count models. We found metrics of fish diversity and counts of native fishes to be greatest upstream (farthest from tidal influence) of the tidal excursion within terminal channels. Counts of non-native fishes were less affected by this hydrodynamic feature of terminal channels and more tightly correlated to local habitat conditions (e.g., water temperature, depth). Our results suggest that channel hydrodynamics plays a role in structuring fish communities within terminal channels, particularly native fishes. These results indicate that hydrodynamics in tidal delta ecosystems may be able to be altered in ways that benefit native fishes without the cost of water pumping.

Hydrogeology and Geochemistry of Aquifers Underlying the San Lorenzo and San Leandro Areas of the East Bay Plain, Alameda County, California

U.S. Geological Survey (USGS) | June 7th, 2003

Hydrogeology of the Sutter Basin, Sacramento Valley, California

University of Arizona | March 23rd, 1971

A mound of saline water exists in continental sediments between two fresh water rivers in the Sutter Basin of the Sacramento Valley, California. This saline water has mov

A mound of saline water exists in continental sediments between two fresh water rivers in the Sutter Basin of the Sacramento Valley, California. This saline water has moved from the marine sediments, at depth, upward along the Sutter Basin Fault and then through 2,000 feet of alluvium.

Hydrogeology, Hydrologic Effects of Development, and Simulation of Groundwater Flow in the Borrego Valley, San Diego County, California

U.S. Geological Survey (USGS) | November 24th, 2015

The Borrego Valley is a small valley (110 square miles) in the northeastern part of San Diego County, California. Although the valley is about 60 miles northeast of city

The Borrego Valley is a small valley (110 square miles) in the northeastern part of San Diego County, California. Although the valley is about 60 miles northeast of city of San Diego, it is separated from the Pacific Ocean coast by the mountains to the west and is mostly within the boundaries of Anza-Borrego Desert State Park. From the time the basin was first settled, groundwater has been the only source of water to the valley. Groundwater is used for agricultural, recreational, and municipal purposes. Over time, groundwater withdrawal through pumping has exceeded the amount of water that has been replenished, causing groundwater-level declines of more than 100 feet in some parts of the basin. Continued pumping has resulted in an increase in pumping lifts, reduced well efficiency, dry wells, changes in water quality, and loss of natural groundwater discharge. As a result, the U.S. Geological Survey began a cooperative study of the Borrego Valley with the Borrego Water District (BWD) in 2009. The purpose of the study was to develop a greater understanding of the hydrogeology of the Borrego Valley Groundwater Basin (BVGB) and to provide tools to help evaluate the potential hydrologic effects of future development. The objectives of the study were to (1) improve the understanding of groundwater conditions and land subsidence, (2) incorporate this improved understanding into a model that would assist in the management of the groundwater resources in the Borrego Valley, and (3) use this model to test several management scenarios. This model provides the capability for the BWD and regional stakeholders to quantify the relative benefits of various options for increasing groundwater storage. The study focuses on the period 1945–2010, with scenarios 50 years into the future.

Hydrologic Modeling of the Santa Clara River Watershed with the U.S. EPA Hydrologic Simulation Program - FORTRAN (HSPF)

Ventura County Watershed Protection District | January 24th, 2009

The purpose of the Santa Clara River (SCR) Watershed Feasibility Study as described in the PMP (October, 2003) is to determine the impact of the upstream urbanization, s

The purpose of the Santa Clara River (SCR) Watershed Feasibility Study as described in the PMP (October, 2003) is to determine the impact of the upstream urbanization, specifically in Los Angeles County, to the present natural state of the river in Ventura County and communities adjacent to the River that expect to develop close to the river banks. It is the goal of the watershed study to develop the necessary baseline data and analytical tools. In order to evaluate these impacts the feasibility study will include: • A comprehensive update of hydrologic, hydraulic, and sediment (yield and transport) models for a range of flow rates for existing conditions and future conditions within the Santa Clara River. The hydrologic model provides the flow data needed as input to the hydraulic and sediment transport models. • The hydrologic model will also be used to evaluate baseline and changes to water quality and pollutant loadings as a result of development or any proposed regional solutions to flooding or water quality problems. • Generate computer models that can simulate the impacts of land use changes under existing, natural and future conditions, and provide data to forecast the resulting changes to streamflow in the Santa Clara River. • Existing conditions include recently installed flood control and water supply/storage facilities. For future conditions, the modeling will include proposed land use changes, any additional flood control or sediment control facilities, and the effects of changes in sediment flow to the downstream areas as a result of proposed alternatives to mitigate flooding or water quality problems. The Natural Condition will be modeled by assuming the watershed has not been developed or subjected to extensive ranching or agricultural activities (pre-European). This document is the Final Report for the watershed hydrology model of the Santa Clara River Watershed using the U.S. EPA Hydrologic Simulation Program FORTRAN (HSPF). This effort was funded directly and wholly by contract with the Ventura County Watershed Protection District (VCWPD). This report identifies and describes the watershed characteristics and types of data required/available for the model, the segmentation of the watershed for modeling purposes, model calibration and validation efforts, and the results for the Baseline and Natural Conditions Scenario model runs. This effort has been designed to produce a comprehensive watershed model that meets the needs of the hydrologic model component of the SCR Watershed Feasibility Study as described above. This model was designed to: a. Represent hydrologic conditions throughout the SCR watershed for a wide range of flow conditions continuously for both high flows, low flows and individual storm events b. Provide continuous flow boundary conditions for the hydraulic and sediment transport models, at the appropriate spatial scales and boundary locations identified by the Feasibility Study participants c. Provide a modeling framework for subsequent sediment yield and water quality modeling requirements of the Feasibility Study d. Include a long-term database of 40 or more years of model input (e.g. precipitation, evaporation, diversions, POTWs) to allow long-term model simulations needed to develop the required flood (and low flow) frequency information at selected points throughout the SCR Watershed e. Provide long-term model simulations for both Baseline (current) and Natural Condition alternatives as a basis for assessing and comparing with planned Future Condition alternatives.

Hydrological processes, groundwater recharge and surface-water/groundwater interactions in arid and semi-arid areas

Cambridge University Press (CUP) | December 1st, 2010

The traditional development of water resources in arid areas has relied heavily on the use of groundwater. Groundwater uses natural storage, is spatially distributed and,

The traditional development of water resources in arid areas has relied heavily on the use of groundwater. Groundwater uses natural storage, is spatially distributed and, in climates where potential evaporation rates can be of the order of metres per year, provides protection from the high evaporation losses experienced by surface-water systems. Traditional methods for the exploitation of groundwater have been varied, including the use of very shallow groundwater in seasonally replenished riverbed aquifers (as in the sand rivers of Botswana), the channelling of unconfined alluvial groundwater in afalaj (or qanats) in Oman and Iran, and the use of hand-dug wells. Historically, abstraction rates were limited by the available technology, and rates of development were low, so that exploitation was generally sustainable. However, in recent decades, pump capacities have dramatically increased and hence agricultural use of water has grown rapidly, while the increasing concentration of populations in urban areas has meant that large-scale well fields have been developed for urban water supply. A common picture in arid areas is that groundwater levels are in rapid decline; in many instances this is accompanied by decreasing water quality, particularly in coastal aquifers where saline intrusion is a threat. Associated with population growth, economic development and increased agricultural intensification, pollution has also become an increasing problem. The integrated assessment and management of groundwater resources is essential so that aquifer systems can be protected from pollution and over-exploitation.

Hydrology and Water Quality Analysis Report for the Amendments to the Cemex Eliot Quarry SMP-23 Reclamation Plan

Alameda County Community Development Agency | December 6th, 2016

The proposed Reclamation Plan Amendment at the CEMEX Eliot Quarry facility in Pleasanton, California has been evaluated from the perspective of the criteria in Appendix G

The proposed Reclamation Plan Amendment at the CEMEX Eliot Quarry facility in Pleasanton, California has been evaluated from the perspective of the criteria in Appendix G of the California Environmental Quality Act (CEQA) and the requirements of Section 3706 of the Surface Mining and Reclamation Act (SMARA), for potential impacts on hydrology and water quality.  Click here for the California CEQA Eliot Quarry page

Hyperspectral characterization of wastewater in the Tijuana River Estuary using laboratory, field, and EMIT satellite spectroscopy

Elsevier | May 8th, 2025

Hundreds of millions of liters of untreated wastewater are discharged into the Tijuana River annually, impacting communities on both sides of the US-Mexico border. Curren

Hundreds of millions of liters of untreated wastewater are discharged into the Tijuana River annually, impacting communities on both sides of the US-Mexico border. Current monitoring methods are resource-intensive and limited in coverage. Optical satellite imaging may enable broader spatiotemporal monitoring, yet retrievals of bacterial concentrations and other key water quality indicators remain challenging. Here we investigate the utility of spectroscopic sensors to monitor the presence of wastewater in this estuarine-coastal system, as a proxy for bacterial concentrations and other water quality parameters. We prepared dilutions of untreated wastewater and uncontaminated seawater, measuring visible through shortwave infrared (VSWIR; 350–2500 nm) reflectance spectra of each sample. At high wastewater concentrations, a distinct spectral feature centered near 620 nm strongly correlated with paired water quality measurements (R2 ≥ 0.97, p-value < 0.01). This feature is additionally observed in multispectral resolution, in field observations, and in hyperspectral satellite imagery. An example application of plume mapping with this feature is presented, representing one of the earliest adoptions of EMIT hyperspectral satellite imagery for water quality monitoring. These results are promising for the use of spectroscopic sensors to map and monitor wastewater pollution in the Tijuana River Estuary and potentially, similarly polluted coastal and estuarine systems.