Managing Agricultural Irrigation Drainage Water: A guide for developing Integrated On-Farm Drainage Management systems

California State Water Resources Control Board (SWRCB) | May 6th, 2004

Chronic problems of salt, selenium, boron and other naturally occurring elements in surface and groundwater supplies plague agricultural regions throughout the Westside o

Chronic problems of salt, selenium, boron and other naturally occurring elements in surface and groundwater supplies plague agricultural regions throughout the Westside of the San Joaquin Valley and the western U.S. Compounding the problem is the build-up of salty subsurface groundwater resulting from dense clay layers and inadequate natural drainage. The Integrated On-Farm Drainage Management (IFDM) system was developed to manage these problems. A state-of-the-art, yet practical irrigation management system, the IFDM provides for drainage water reuse to improve water availability for crop production and to minimize salt and selenium risks to water quality and the environment. IFDM manages irrigation water on salt sensitive, high value crops and reuses drainage water to irrigate salt-tolerant crops, trees and halophyte plants. Salt and selenium are removed from the farming system and can be marketed. This system views the subsurface drainage water containing salts and selenium as resources, rather than considering them as wastes and environmental problems.

Methods of Analysis—Determination of Pesticides in Filtered Water and Suspended Sediment using Liquid Chromatography- and Gas Chromatography-Tandem Mass Spectrometry

U.S. Geological Survey (USGS) | January 31st, 2024

The widespread application of pesticides in agricultural and urban areas leads to their presence in surface waters. Presence of these biologically active chemicals in en

The widespread application of pesticides in agricultural and urban areas leads to their presence in surface waters. Presence of these biologically active chemicals in environmental waters potentially has adverse effects on nontarget organisms. To better understand the environmental fate of these contaminants, a robust method to capture chemicals with wide-ranging physicochemical properties has been developed. The method was developed by the U.S. Geological Survey’s Organic Chemistry Research Laboratory to monitor pesticides, pesticide degradates, and other agrochemicals in environmental surface waters throughout the country. The analysis involves a multiresidue method to determine 183 pesticides and pesticide degradates in filtered water samples and 178 pesticides and pesticide degradates in paired suspended sediment samples. After the filtration of whole water, contaminants are individually measured in the filtered water and the collected suspended sediment. Filtered water is extracted via solid-phase extraction, whereas suspended sediment is extracted using an ultrasonication, solid-liquid extraction. Samples are analyzed by liquid chromatography-tandem mass spectrometry using an electrospray ionization source in positive and negative modes and analyzed by gas chromatography-tandem mass spectrometry using an advanced electron ionization source in positive mode. Instrument parameters were optimized for the highest sensitivity, and at least two transitions (quantifier and qualifier) were monitored for each analyte. Recoveries in test filtered water (n=9; 183 analytes) from the American River, California, and suspended sediment (n=9; 178 analytes) samples fortified at 15 nanograms per liter (ng/L) ranged from 70.1 to 121.0 and 71.1 to 117.0 percent in water and suspended sediment filter samples, respectively.

MSS Salinity Point Source and Ion Sampling to the Monitoring Special Study Plan CY 2022–2023 Work Plan Monitoring Plan

California Department of Water Resources (DWR) | August 16th, 2023

The interior southern Delta region of the San Francisco Estuary (SFE) has relatively higher seasonal-based salinity compared to other interior freshwater regions. Some of

The interior southern Delta region of the San Francisco Estuary (SFE) has relatively higher seasonal-based salinity compared to other interior freshwater regions. Some of this degradation in water quality in the interior southern Delta likely originates in upstream salt loading from agriculture drainage in the San Joaquin River prior to reaching the channels of Old River and Grant Line Canal. However, there is also measurable increases in salt loading within the channel networks of Old River at Head (OH1) east to lower Old River near Mountain House Creek (ORM) and the interconnected sloughs of Paradise and Sugar Cut in the region of Doughty Cut (in-Delta agriculture drainage), as well as other naturally occurring (i.e., groundwater) sources and other non-point and point sources. The California Department of Water Resources (DWR) and U.S. Bureau of Reclamation (Reclamation), under the State Water Resources Control Board’s (State Water Board) Water Right Decision 1641 (D-1641), are assigned partial responsibility for meeting interior southern Delta water quality objectives each year at multiple compliance stations that measure specific conductance (EC) data continuously at 15-minute intervals.

Pesticide Concentrations of Surface Water and Suspended Sediment in Yolo By-Pass and Cache Slough Complex, California, 2019–2021

U.S. Geological Survey (USGS) | July 9th, 2024

Managed flow pulses in the north Sacramento-San Joaquin Delta are an adaptive management tool used in efforts to enhance food availability in delta smelt (Hypomesus trans

Managed flow pulses in the north Sacramento-San Joaquin Delta are an adaptive management tool used in efforts to enhance food availability in delta smelt (Hypomesus transpacificus) habitat as part of the North Delta Food Subsidies Action. The California Department of Water Resources (DWR) monitors non-managed seasonal and local flow pulses and managed flow pulses from agricultural drainage or main stem Sacramento River water redirected through Yolo By-Pass. Augmented flow pulses are hypothesized to improve net positive flow during summer and fall in Yolo By-Pass and enhance plankton availability in delta smelt habitat in Cache Slough complex. However, flow pulses may also result in unintended negative effects of increased pesticides that are transported through Yolo By-Pass. Here, we evaluate pesticides in surface water and suspended sediment correlated with flow pulses in Yolo By-Pass during the 2019–21 calendar years. Surface-water and suspended-sediment samples were collected by DWR personnel. Water samples were analyzed at the U.S. Geological Survey Organic Chemistry Research Laboratory in Sacramento, California, for a suite of as many as 178 current-use pesticides and pesticide degradates using gas chromatography with mass spectrometry (GC/MS), gas chromatography with tandem mass spectrometry, and liquid chromatography with tandem mass spectrometry. Suspended sediments filtered from water samples were analyzed for a suite of as many as 173 current-use pesticides and pesticide degradates. There were 52 different current-use pesticides and pesticide degradates detected in water samples collected throughout the study. Concentrations ranged from below method detection limits to 4,070 nanograms per liter. Five different compounds in water samples were detected with concentrations above U.S. Environmental Protection Agency aquatic life benchmarks. In suspended-sediment samples collected throughout the study, eight different current-use pesticides and pesticide degradates were detected. Total pesticide concentrations were highest at surface-water sites in the northern end of Yolo By-Pass and decreased farther downstream during the same sampling events. Total pesticide concentrations generally were higher for most surface-water sites immediately before or during the managed flow pulse in 2019 versus after the flow pulse. Finally, mean total pesticide concentrations for each surface-water site generally were higher during all of 2019 than 2021, regardless of sampling period.

Potential Impacts of Reduced Inflows to the Salton Sea: Forecasting Non-market Damages

American Water Resources Association (AWRA) | September 28th, 2022

Quality of Groundwater Used for Domestic Drinking-Water Supply in the Coachella Valley, 2020

U.S. Geological Survey (USGS) | January 13th, 2023

Quality of Groundwater Used for Domestic Supply in the Modesto, Turlock, and Merced Subbasins of the San Joaquin Valley, California

U.S. Geological Survey (USGS) | January 6th, 2023

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domes

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domestic and small-system drinking-water supply wells in the Modesto, Turlock, and Merced subbasins of the San Joaquin Valley where more than 78,000 residents are estimated to use privately owned domestic wells. Results indicate that inorganic and organic constituents in groundwater were respectively present above regulatory (maximum contaminant level, MCL) benchmarks for public drinking-water quality in 37 percent and 9 percent of the aquifer area used for domestic drinking-water supplies (herein, “domestic groundwater resources”). The most prevalent inorganic constituents exceeding regulatory benchmarks were nitrate, uranium, and arsenic. The only organic constituents exceeding regulatory benchmarks were the fumigant constituents 1,2,3-trichloropropane (1,2,3-TCP) and 1,2-dibromo-3-chloropropane (DBCP), but the herbicides atrazine and simazine were detected at low concentrations below one-tenth of regulatory benchmarks in 30 percent of domestic groundwater resources. Total dissolved solids (TDS) and manganese exceeded aesthetic-based (secondary maximum contaminant level [SMCL]) benchmarks for drinking water in 3 percent and 13 percent of domestic groundwater resources, respectively. Per- and polyfluoroalkyl substances (PFAS) were detected in 23 percent of domestic groundwater resources, with 4 percent exceeding California state notification or response levels for specific compounds. Total coliform bacteria were detected in 20 percent of domestic groundwater resources. Elevated concentrations of nitrate, uranium, TDS, and pesticides (fumigant constituents and herbicides) are related to agricultural land use and were typically present at shallow depths up to 75 meters below land surface. Agriculturally derived constituents were detected in wells screened below the Corcoran Clay Member of the Tulare Formation (herein, “Corcoran Clay”) in the southeastern part of the study area, where the Corcoran Clay tends to be shallower and thinner than in areas to the northwest. Nitrate, uranium, and TDS were most prevalent in the northwest part of the study area proximal to the valley trough where soils are poorly drained and agricultural land uses are predominantly grain, alfalfa, and dairy farms. Pesticides tended to occur in groundwater below coarse-grained surficial deposits and within a northwest to southeast trending band along the eastern extent of the Corcoran Clay that typically demarcates the western extent of well-drained soils associated with perennial orchard crops. Elevated concentrations of arsenic tended to occur west of this band in reducing groundwater but also sometimes co-occurred with elevated nitrate in oxic groundwater, most likely because of geochemical conditions in agriculturally affected groundwater that can enhance the mobility of arsenic from aquifer sediments.

Remote sensing is a viable tool for mapping soil salinity in agricultural lands

University of California, Davis (UC Davis) | April 7th, 2017

Report to the California State Legislature Joint Legislative Budget Committee on Reduction of Agricultural Pollution Runoff into the Sacramento-San Joaquin Delta

California State Water Resources Control Board (SWRCB) | December 1st, 2010

This report has been prepared pursuant to the requirements of the Supplemental Report to the 2008 Budget Act: “On or before March 30, 2009, State Water Resources Con

This report has been prepared pursuant to the requirements of the Supplemental Report to the 2008 Budget Act: “On or before March 30, 2009, State Water Resources Control Board (State Water Board) shall submit a report to the Joint Legislative Budget Committee and to the relevant policy committees that details: (a) the precise actions the State Water Board would have to undertake to obtain a 30 percent reduction to agricultural pollution runoff in to the Sacramento-San Joaquin Delta [Delta] and its tributary watersheds by 2012, (b) the estimated costs of those actions, and (c) which of those actions can be completed administratively and which would require legislation to implement.” The Central Valley Regional Water Quality Control Board, (Central Valley Regional Water Board) staff has determined that replacing irrigation practices that produce return flow is the only method of ensuring a 30 percent reduction in agricultural pollution runoff to the Delta by 2012. The program would be focused within the Delta and San Joaquin River watershed and apply to surface return flow (tailwater). Tailwater can convey contaminants applied to or on the land surface, such as pesticides, sediment, fertilizer, and manure. Tile water (subsurface drainage pumped to surface waters) contains naturally occurring minerals found in ground water, and may contain contaminants leached into the ground water due to application on the land surface. However, tile water is not the focus of this control strategy, since it would take longer to implement the required control technologies. Irrigation return flow is the focus of this effort, since it is more amenable to control (versus storm water runoff) and over 60 percent of the exceedances of water quality objectives we have identified occur during the irrigation season.1 A target of converting 50 percent of the irrigated acres that produce runoff to more efficient irrigation practices that produce no runoff is recommended. A 50 percent conversion target is recommended, since there are other pathways for agricultural pollutants to reach the Delta through surface waters (e.g., pesticide drift, tile water drainage), so a larger percentage reduction in irrigation runoff would be needed to ensure that the overall 30 percent pollution reduction goal is achieved. The estimated cost to the agricultural community to implement the required management practices is $250 million - $450 million in capital cost, assuming half of the one million acres of agricultural land requiring improved irrigation management systems would be targeted to meet the 2012 timeframe. Additional Central Valley Regional Water Board staff resources of up to 10 PY would be required to ensure the required practices are implemented.

Retiring Poisoned Lands in the Western San Joaquin Valley: A C-WIN Policy Brief

California Water Impact Network (C-WIN) | January 1st, 2012

It is the policy of the California Water Impact Network to: •Retire poisoned lands from irrigation so that pollution from naturally high levels of contaminants such

It is the policy of the California Water Impact Network to: •Retire poisoned lands from irrigation so that pollution from naturally high levels of contaminants such as salt, selenium, boron, mercury, arsenic and molybdenum is ended. •End wasteful and unreasonable uses of water as mandated under the California Constitution. •Slow or stop the spread of contamination to drinking water supplies, aquifers and aquatic food webs (including those with anadromous fish) where it now occurs, thereby protecting human and public health. •Redirect as much as 4 million acre-­feet of fresh water freed from retired lands to other beneficial uses within the Central Valley watershed, including fish and wildlife refuges, Delta ecosystem restoration and instream flows, and drought-­period municipal uses. •Require that solutions for retiring the poisoned lands from irrigation result in either no net change or an actual net decrease in energy consumption associated with use of those lands.