Sediment Mobility and River Corridor Assessment for a 140-Kilometer Segment of the Main-Stem Klamath River Below Iron Gate Dam, California

U.S. Geological Survey (USGS) | January 26th, 2021

This river corridor assessment documents sediment mobility and river response to flood disturbance along a 140-kilometer segment of the main-stem Klamath River below Iron

This river corridor assessment documents sediment mobility and river response to flood disturbance along a 140-kilometer segment of the main-stem Klamath River below Iron Gate Dam, California. Field and remote sensing methods were used to assess fundamental indicators of active sediment transport and river response to a combination of natural runoff events and reservoir releases during the study period from 2005 to 2019. Discharge measurements at two gaged sites and bed-material samples at two ungaged sites provided direct and indirect evidence of mobile bed conditions, scour and fill, and surface flushing of fine sediment. Available remote-sensing datasets collected in 2005, 2009, 2010, and 2016 were used to determine sediment storage, flood inundation boundaries, and provide indirect evidence of flood-induced scour. These datasets validate channel-maintenance flows defined by Shea and others (2016). During the study period, flows greater than or equal to 6,030 cubic feet per second mobilized the substrate, caused localized scour, and flushed fine sediment from bar surfaces. Flows greater than or equal to 10,400 cubic feet per second stripped vegetation from bars and floodplains and produced deeper scour. Flood disturbance within the study reach is produced by the combined effect of natural flows and reservoir releases, which resulted in mobile bed conditions during the study period. Periodic scour and substrate disturbance are considered by the U.S. Fish and Wildlife Service to be integral for managing disease-induced mortality of juvenile and adult salmonids. Substrate conditions conducive to parasites that host infectious diseases, particularly Ceratonova shasta, occur periodically. Additional studies are required to determine whether disease prevalence can be mitigated by well-timed reservoir releases. Study results are useful for interpreting linkages among physical and biological processes and for evaluating the effectiveness of flow management targeted to improve river bed conditions for endangered salmonid populations.

Selenium in White Sturgeon from North San Francisco Bay: The 2015-2017 Sturgeon Derby Study

San Francisco Estuary Institute (SFEI) | October 1st, 2019

This report presents the findings from a study evaluating selenium concentrations in white sturgeon (Acipenser transmontanus) tissues collected during the 2015-2017 Sturg

This report presents the findings from a study evaluating selenium concentrations in white sturgeon (Acipenser transmontanus) tissues collected during the 2015-2017 Sturgeon Derby events in North San Francisco Bay. The goal of this study was to investigate the distribution of selenium among sturgeon tissues to inform the toxicological and regulatory interpretation of selenium measured in non-lethally collected tissues, including muscle plugs and fin rays. This technical report provides documentation of the study and presents its major findings. 

Selenium in White Sturgeon Tissues: 2015 Sturgeon Derby

San Francisco Estuary Institute (SFEI) | August 1st, 2017

The Original Sturgeon Derby (Derby) is an annual fishing derby held in Bay Point, CA that presents an opportunity to collect and analyze a variety of tissue samples from

The Original Sturgeon Derby (Derby) is an annual fishing derby held in Bay Point, CA that presents an opportunity to collect and analyze a variety of tissue samples from angler-harvested white sturgeon (Acipenser transmontanus) for selenium (Se). Collection and analysis of these tissues from the 2015 Derby helped to: 1) develop non-lethal sampling methods and 2) better understand the correlation between tissues that can be collected non-lethally (muscle plug, fin ray) with those that are of greater toxicological interest (ovary, liver). Otolith samples were also collected to inform the development of methods for fin ray Se microchemical analysis. On January 31 and February 1, 2015, tissue samples were obtained from eight female and 19 male white sturgeon collected at the Derby and analyzed for Se. The fin rays were also used to estimate age of the fish, and the muscle plugs were analyzed for carbon (δ13 C), nitrogen (δ15 N), and sulfur (δ34 S) isotope ratios to provide information about recent habitat (e.g., primarily Delta, North Bay, or ocean) and foraging behavior (e.g., primarily clam- or fish-based diet). 

Shasta Dam Fish Passage Evaluation – Pilot Implementation Plan – U.S. Bureau of Reclamation

U.S. Bureau of Reclamation (USBR) | September 1st, 2015

Shoreline retreat and beach nourishment are projected to increase in Southern California

Nature Portfolio (Springer Nature) | May 22nd, 2024

Sandy beaches in Southern California are experiencing rising coastal erosion due to changes in precipitation patterns and urban growth. As a result, beach nourishment is

Sandy beaches in Southern California are experiencing rising coastal erosion due to changes in precipitation patterns and urban growth. As a result, beach nourishment is necessary for mitigation. In our study, we forecast the rates of shoreline retreat and the required volumes of sand nourishment to mitigate it for the coming decades. We employ photogrammetric multi-decadal shoreline positioning and Digital Shoreline Analysis System methods to measure and predict the coastal evolution of the Gulf of Santa Catalina in Southern California. This region is hypothesized to be globally representative of other semi-arid sandy coasts facing similar hydroclimatic and anthropogenic challenges. Our findings indicate that Southern California’s shoreline retreat rates for sandy beaches will increase from the present average value of ~−1.45 to −2.12 meters per year in 2050 and to −3.18 meters per year in 2100. Consequently, the annual volume of sand required for beach nourishment could triple by 2050, increasing from the present-day amount of ~1223 to ~3669 cubic meters per year per kilometer. However, the associated cost for this nourishment will grow five times, exacerbating several coastal communities’ economic and logistical pressures. Similar trends are emerging globally, with semi-arid developing nations already grappling with coastal hazards and may struggle to manage the escalating costs of curbing beach nourishment.

Significant challenges to the sustainability of the California coast considering climate change

National Academy of Sciences (NAS) | July 29th, 2024

Simulated Effects of Future Water Availability and Protected Species Habitat in a Perennial Wetland, Santa Barbara County, California

Water (MDPI) | April 21st, 2025

This study evaluates the potential water availability in Barka Slough and the effects of changing hydrological conditions on the aquatic habitat of five protected species

This study evaluates the potential water availability in Barka Slough and the effects of changing hydrological conditions on the aquatic habitat of five protected species.

Sixteen years of bathymetry and waves at San Diego beaches

Nature Portfolio (Springer Nature) | August 29th, 2019

Sustained, quantitative observations of nearshore waves and sand levels are essential for testing beach evolution models, but comprehensive datasets are relatively rare.

Sustained, quantitative observations of nearshore waves and sand levels are essential for testing beach evolution models, but comprehensive datasets are relatively rare. We document beach profiles and concurrent waves monitored at three southern California beaches during 2001–2016. The beaches include offshore reefs, lagoon mouths, hard substrates, and cobble and sandy (medium-grained) sediments. The data span two energetic El Niño winters and four beach nourishments. Quarterly surveys of 165 total cross-shore transects (all sites) at 100 m alongshore spacing were made from the backbeach to 8 m depth. Monthly surveys of the subaerial beach were obtained at alongshore-oriented transects. The resulting dataset consists of (1) raw sand elevation data, (2) gridded elevations, (3) interpolated elevation maps with error estimates, (4) beach widths, subaerial and total sand volumes, (5) locations of hard substrate and beach nourishments, (6) water levels from a NOAA tide gauge (7) wave conditions from a buoy-driven regional wave model, and (8) time periods and reaches with alongshore uniform bathymetry, suitable for testing 1-dimensional beach profile change models.

Skarry Removal

California State Lands Commission (SLC) | May 1st, 2025

The Commission’s contractor will remove booms, winches, and other superstructures from the crane barges on site. This equipment will be cut into pieces and placed on a

The Commission’s contractor will remove booms, winches, and other superstructures from the crane barges on site. This equipment will be cut into pieces and placed on a materials barge for recycling. Floating booms will surround the work site and contain any debris. Once lightened of equipment, a crane will remove the two smaller barges directly from the water. The largest barge will be refloated and towed by water to the Mare Island shipyard, where it will be removed from the water and demolished. Scrap metal will be recycled, and other debris will be hauled to a landfill for disposal. Click here for the staff report that accompanied the plan.

Small Populations in Jeopardy: A Delta Smelt Case Study

Social Science Research Network (SSRN) | February 21st, 2021

Under §7 of the federal Endangered Species Act, federal agencies must ensure that actions they authorize, fund, or carry out are “not likely to jeopardize the continue

Under §7 of the federal Endangered Species Act, federal agencies must ensure that actions they authorize, fund, or carry out are “not likely to jeopardize the continued existence of any endangered species or threatened species or result in the destruction or adverse modification of habitat of such species.” For species with low and declining populations, applying this standard is legally and scientifically difficult. The U.S. Fish and Wildlife Service (FWS) faced this problem in its recent biological opinion (BiOp) analyzing impacts to threatened Delta smelt from water project operations in the California Delta. FWS concluded the “species’ recent abundance trends strongly suggest it is in the midst of demographic collapse,” and most recent surveys to locate smelt have failed to find them. Nevertheless, FWS approved agency actions that will likely increase extinction risk for Delta smelt. This Comment illustrates, through a case study of the Delta smelt BiOp, the difficulties in making ESA jeopardy determinations for species on the brink of extinction. We conclude that the myriad challenges inherent in conservation of some small and declining populations make reasoned §7 analysis difficult, bordering on impossible.