The Delta Plan: Ensuring a reliable water supply for California, a healthy Delta ecosystem, and a place of enduring value

Delta Stewardship Council (Delta Council) | May 16th, 2013

The Sacramento-San Joaquin River Delta is the grand confluence of California’s waters, the place where the state’s largest rivers merge in a web of channels—and in

The Sacramento-San Joaquin River Delta is the grand confluence of California’s waters, the place where the state’s largest rivers merge in a web of channels—and in a maze of controversy. The Delta is a zone where the wants of a modern society come into collision with each other and with the stubborn limitations of a natural system. In 2009, seeking an end to decades of conflict over water, the Legislature established the Delta Stewardship Council with a mandate to resolve long-standing issues. The first step toward that resolution is the document you have before you, the Delta Plan.

The effects of kaolin clay on the amphipod Eohaustorius estuarius: Part Two

San Francisco Estuary Institute (SFEI) | April 3rd, 2017

A number of lines-of-evidence suggest that the amphipod Eohaustorius estuarius has variable tolerance to clay in sediments. In Phase 1 of the current RMP special study, l

A number of lines-of-evidence suggest that the amphipod Eohaustorius estuarius has variable tolerance to clay in sediments. In Phase 1 of the current RMP special study, laboratory dose-response experiments were conducted in 2014 with kaolin clay to evaluate whether clay effects varied with amphipod size. The results indicated that smaller amphipods were more tolerant of clay than larger individuals. Average survival was 81%, 79%, and 65% for small, medium and large amphipods, respectively, in concentrations > 50% clay. As part of Phase 2 confirmation studies conducted in 2015-2016, the original kaolin dose-response experiments were repeated. Results of this experiment showed that average amphipod survival was 88%, 63%, and 41% for small, medium and large amphipods, respectively, in concentrations > 50% clay. Standard 96-hour reference toxicant tests with cadmium chloride (CdCl2) were conducted to determine whether there were size-specific differences in response to this metal reference toxicant. The CdCl2 median lethal concentrations (LC50s) for small, medium and large amphipods were 6.78, 5.13, and 4.63 mg/L, respectively. Responses of all three size classes to cadmium were within historic confidence intervals for this reference metal, and were not significantly different from one another based on overlapping confidence intervals. Additional experiments with high clay reference site sediments from San Francisco Bay were conducted to confirm the size related response with field sediments. The results confirm that use of smaller amphipods in routine monitoring of high clay sediments will reduce the influence of this factor on test results. 

The Effects of Salmon Fisheries on Southern Resident Killer Whales

National Marine Fisheries Service (NMFS) | November 30th, 2012

The Influence of Zooplankton Availability on Delta Smelt Condition and Foraging Across Habitat Contexts

Publisher not available | December 19th, 2025

Strategies for endangered species conservation may have different outcomes depending on the habitat context in which they are implemented. Understanding these context-dep

Strategies for endangered species conservation may have different outcomes depending on the habitat context in which they are implemented. Understanding these context-dependent effects can help optimize and target management efforts. In this analysis, we investigate how environmental and food-web conditions interactively affect condition and foraging of Delta Smelt (Hypomesus transpacificus), an endangered fish endemic to the San Francisco Estuary (the estuary). Food limitation, in terms of pelagic zooplankton availability, is considered a main factor that contributes to the decline in Delta Smelt abundance. Our overarching objective was to examine whether the effect of zooplankton on Delta Smelt depended on habitat context. Specifically, we hypothesized that zooplankton would less positively effect Delta Smelt condition—as measured by hepatosomatic index (HSI)—and foraging success in areas with nearby tidal wetlands, because these adjacent habitats may provide access to prey items from the epibenthos and fringing vegetation. In contrast, in regions with limited proximity to wetlands, we hypothesized that Delta Smelt would rely more on pelagic prey, which would manifest as a more positive effect of zooplankton on body condition and foraging success for Delta Smelt. Using models that accounted for habitat in multiple ways, we found little evidence that zooplankton and habitat interactively influenced Delta Smelt condition or gut fullness. Rather, the influence of zooplankton on HSI and gut fullness was generally positive across habitat contexts. Given the well-documented food limitation in the estuary, promoting the availability of pelagic zooplankton is a rational, albeit complex, management aim. Furthermore, our results suggest that efforts to increase zooplankton would broadly benefit Delta Smelt across a wide range of habitat contexts.

The National Significance of California’s Ocean Economy

National Oceanic and Atmospheric Administration (NOAA) | December 17th, 2015

The purpose of this report is to present empirical evidence that illustrates the inland significance of California’s marine transportation and ocean tourism sec

The purpose of this report is to present empirical evidence that illustrates the inland significance of California’s marine transportation and ocean tourism sectors. This report begins with a discussion of California’s economy and then takes a closer look at six economic sectors that depend on ocean resources. Finally, we take an even closer look at two of these sectors—marine transportation and coastal tourism and recreation—and the way these ocean-based activities support local economies across the country.

The NOAA NCEI marine microplastics database

Nature Portfolio (Springer Nature) | October 20th, 2023

Microplastics (<5 mm) pollution is a growing problem affecting coastal communities, marine ecosystems, aquatic life, and human health. The widespread occurrence of m

Microplastics (<5 mm) pollution is a growing problem affecting coastal communities, marine ecosystems, aquatic life, and human health. The widespread occurrence of marine microplastics, and the need to curb its threats, require expansive, and continuous monitoring. While microplastic research has increased in recent years and generated significant volumes of data, there is a lack of a robust, open access, and long-term aggregation of this data. The National Oceanic and Atmospheric Administration (NOAA) National Centers for Environmental Information (NCEI) now provides a global open access to marine microplastics data on an easily discoverable and accessible GIS web map and data portal. The objective of this data portal is to develop a repository where microplastics data are aggregated, archived, and served in a user friendly, consistent, and reliable manner. This work contributes to NCEI’s efforts towards data standardization, integration, harmonization, and interoperability among national and international collaborators for monitoring global marine microplastics. This paper describes the NOAA NCEI global marine microplastics database, its creation, quality control procedures, and future directions.

The Pacific Decadal Oscillation modulated marine heatwaves in the Northeast Pacific during past decades

Nature Portfolio (Springer Nature) | June 19th, 2023

The Rebirth of California Fish & Game Code Section 5937: Water for Fish

University of California, Davis (UC Davis) | July 1st, 2012

Swarms of living creatures will live wherever the river flows. There will be large numbers of fish, because this water flows there and makes the salt water fresh; so wh

Swarms of living creatures will live wherever the river flows. There will be large numbers of fish, because this water flows there and makes the salt water fresh; so where the river flows everything will live. Fishermen will stand along the shore; from En Gedi to En Eglaim there will be places for spreading nets. In an average year, California receives inflows and imports of water totaling around 200 million acre-feet,2 enough water to cover the entire state twenty-three inches deep. But California is a state of spatial and temporal water extremes. Spatially, precipitation varies wildly: Death Valley in the Southeast averages less than three inches per year, yet the northwestern corner of the state averages over 140 inches per year. More than 70% of California’s stream flow originates north of Sacramento, but more than 80% of the water is used south of Sacramento. Temporally, precipitation varies both seasonally and annually. California’s wet season typically runs from October or November to April or May, with little or no precipitation during the growing season, from May to September.7 Annual rainfalls of 40% or more below average and 36% or more above average each typically occur once every six to seven years.  To balance these extremes, over 1,300 dams store water across the state, supplying water for urban, industrial, and agricultural uses. While these uses sustain a tremendous part of California’s economy, they also come at high, often unappreciated costs. Fish also need water, so dams that alter water flows for human benefits may also have marked negative impacts on fish.

The Role of Tidal Marsh Restoration in Fish Management in the San Francisco Estuary

University of California, Davis (UC Davis) | March 1st, 2014

Tidal marsh restoration is an important management issue in the San Francisco Estuary (estuary). Restoration of large areas of tidal marsh is ongoing or planned in the lo

Tidal marsh restoration is an important management issue in the San Francisco Estuary (estuary). Restoration of large areas of tidal marsh is ongoing or planned in the lower estuary (up to 6,000 ha, Callaway et al. 2011). Large areas are proposed for restoration in the upper estuary under the Endangered Species Act biological opinions (3,237 ha) and the Bay Delta Conservation Plan (26,305 ha). In the lower estuary, tidal marsh has proven its value to a wide array of species that live within it (Palaima 2012). In the Sacramento–San Joaquin Delta (Delta), one important function ascribed to restoration of freshwater tidal marshes is that they make large contributions to the food web of fish in open waters (BDCP 2013). The Ecosystem Restoration Program ascribed a suite of ecological functions to tidal marsh restoration, including habitat and food web benefits to native fish (CDFW 2010). This background was the basis for a symposium (Tidal Marshes and Native Fishes in the Delta: Will Restoration Make a Difference?) held at the University of California, Davis, on June 10, 2013. This paper summarizes conclusions the authors drew from the symposium.

The San Francisco Bay-Delta Agreement: Principles for Agreement on Bay-Delta Standards Between the State of California and the Federal Government

California State Water Resources Control Board (SWRCB) | December 15th, 1994