Pulse of the Delta 2011

San Francisco Estuary Institute (SFEI) | March 16th, 2011

Welcome to the first issue of the Pulse of the Delta: Monitoring and Managing Water Quality in the Sacramento – San Joaquin Delta, the new publication of the emerging D

Welcome to the first issue of the Pulse of the Delta: Monitoring and Managing Water Quality in the Sacramento – San Joaquin Delta, the new publication of the emerging Delta Regional Monitoring Program (RMP). This report is a direct response to Delta RMP stakeholders’ desire for an accessible water quality summary for the Delta that addresses important regional questions. Table of Contents: Did Contaminants Play a Role in the Pelagic Organism Decline? The Delta RMP: Re-thinking Water Quality Monitoring in the Delta Ammonia in the Delta: The science, implications for management How Delta Studies Have Reshaped Our Understanding Pyrethroid Insecticides Contaminants of Emerging Concern: Adapting to a Moving Target New Pesticides

Pulse of the Delta 2012

San Francisco Estuary Institute (SFEI) | August 2nd, 2013

This second edition of the Pulse of the Delta includes the following sections: The KEY TOPIC article introduces this year’s theme, LINKING SCIENCE AND MANAGEMENT THR

This second edition of the Pulse of the Delta includes the following sections: The KEY TOPIC article introduces this year’s theme, LINKING SCIENCE AND MANAGEMENT THROUGH REGIONAL MONITORING (PAGE 6). The MANAGEMENT UPDATE section provides updates on Delta RMP development (PAGE 12) and the U.S. Environmental Protection Agency (EPA)’s Delta Clean Water Act evaluation (PAGE 18). It further provides an update on the development of Nutrient Numeric Endpoints for San Francisco Bay, due to the relevance of this topic to Delta stakeholders (PAGE 28). And as a new feature, the Management Update section now also provides a regulatory status update for pollutants of concern. This edition of the Pulse of the Delta introduces a NEW STATUS AND TRENDS section with updates on important monitoring results (PAGE 44) and leading indicators (PAGE 50) for the Delta. The STATUS AND TRENDS section was made possible thanks to significant contributions by the Interagency Ecological Program, U.S. Geological Survey, the Central Valley Regional Water Board, California Department of Fish and Game, California Department of Water Resources, and scientists at the UC Berkeley and San Francisco State University Romberg Tiburon Center. Two FEATURE ARTICLES provide an overview of recent research findings that could help wetland managers reduce the methylmercury problem and a glimpse into the future of the Interagency Ecological Program (IEP). One of the main challenges as ecosystem restoration efforts are moving forward will be the mercury problem. Large-scale restoration of wetland areas will be required to provide a sufficient amount of aquatic habitat for restoring the Delta ecosystem. At the same time, water quality managers will need to identify actions to protect people and wildlife from exposure to methylmercury that may originate from restored wetlands, due to a legacy of mercury contamination in Delta soils. Recently completed and ongoing studies in the Yolo Bypass provide new information on management options for controlling methylmercury production in wetlands and offsite transport (PAGE 66). IEP scientists have been monitoring and researching the San Francisco Estuary since 1970. Now the IEP has arrived at an important crossroads, and its future is being decided at the same time as environmental managers are determining what a desirable future ecosystem would look like, how it would function, and how it can be established (PAGE 76).

Quality Assurance Program Plan for The Regional Monitoring Program for Water Quality in San Francisco Bay

San Francisco Estuary Institute (SFEI) | June 23rd, 2017

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is managed and operated by the San Francisco Estuary Institute (SFEI). SFEI was founded as a

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) is managed and operated by the San Francisco Estuary Institute (SFEI). SFEI was founded as a non-profit organization in 1986 to foster the development of the scientific understanding needed to protect and enhance the San Francisco Estuary.

Quality Assurance Program Plan for The Regional Monitoring Program for Water Quality in San Francisco Bay

San Francisco Estuary Institute (SFEI) | December 16th, 2019

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) was created to provide long-term monitoring information on ecosystem health in the Bay. The i

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP) was created to provide long-term monitoring information on ecosystem health in the Bay. The impetus for the program development was a resolution by the San Francisco Bay Regional Water Board to require dischargers in the Bay Area regulated under the National Pollution Discharge Elimination System (NPDES) program to participate in regional monitoring. Contribution to the Program constitutes compliance with the requirement to participate. Elimination of certain permit requirements for individual permits offset the requirement for continued participation.  The RMP began as a pilot study in 1989 and has been collecting water, sediment, and biological tissue data since 1993. The Status and Trends component of the RMP routinely collects monitoring data on these environmental matrices. The San Francisco Bay Regional Water Quality Control Board (Water Board) uses Status and Trends data to assist in regulatory decision-making, such as for determining impairment (303(d)) listing, NPDES permit conditions, and estimating Total Maximum Daily Loads (TMDL) of various pollutants needed to protect ecosystem and human health. The data are also useful for monitoring and modeling the effectiveness of past and planned management actions.  The overarching goal of the program is to collect data and communicate information about water quality in San Francisco Bay to support management decisions. The RMP, in consultation with its stakeholders, the Technical Review Committee, and the Steering Committee refined the management questions in May 2008. 

Quality of Groundwater Used for Domestic Drinking-Water Supply in the Coachella Valley, 2020

U.S. Geological Survey (USGS) | January 13th, 2023

Quality of Groundwater Used for Domestic Supply in the Modesto, Turlock, and Merced Subbasins of the San Joaquin Valley, California

U.S. Geological Survey (USGS) | January 6th, 2023

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domes

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domestic and small-system drinking-water supply wells in the Modesto, Turlock, and Merced subbasins of the San Joaquin Valley where more than 78,000 residents are estimated to use privately owned domestic wells. Results indicate that inorganic and organic constituents in groundwater were respectively present above regulatory (maximum contaminant level, MCL) benchmarks for public drinking-water quality in 37 percent and 9 percent of the aquifer area used for domestic drinking-water supplies (herein, “domestic groundwater resources”). The most prevalent inorganic constituents exceeding regulatory benchmarks were nitrate, uranium, and arsenic. The only organic constituents exceeding regulatory benchmarks were the fumigant constituents 1,2,3-trichloropropane (1,2,3-TCP) and 1,2-dibromo-3-chloropropane (DBCP), but the herbicides atrazine and simazine were detected at low concentrations below one-tenth of regulatory benchmarks in 30 percent of domestic groundwater resources. Total dissolved solids (TDS) and manganese exceeded aesthetic-based (secondary maximum contaminant level [SMCL]) benchmarks for drinking water in 3 percent and 13 percent of domestic groundwater resources, respectively. Per- and polyfluoroalkyl substances (PFAS) were detected in 23 percent of domestic groundwater resources, with 4 percent exceeding California state notification or response levels for specific compounds. Total coliform bacteria were detected in 20 percent of domestic groundwater resources. Elevated concentrations of nitrate, uranium, TDS, and pesticides (fumigant constituents and herbicides) are related to agricultural land use and were typically present at shallow depths up to 75 meters below land surface. Agriculturally derived constituents were detected in wells screened below the Corcoran Clay Member of the Tulare Formation (herein, “Corcoran Clay”) in the southeastern part of the study area, where the Corcoran Clay tends to be shallower and thinner than in areas to the northwest. Nitrate, uranium, and TDS were most prevalent in the northwest part of the study area proximal to the valley trough where soils are poorly drained and agricultural land uses are predominantly grain, alfalfa, and dairy farms. Pesticides tended to occur in groundwater below coarse-grained surficial deposits and within a northwest to southeast trending band along the eastern extent of the Corcoran Clay that typically demarcates the western extent of well-drained soils associated with perennial orchard crops. Elevated concentrations of arsenic tended to occur west of this band in reducing groundwater but also sometimes co-occurred with elevated nitrate in oxic groundwater, most likely because of geochemical conditions in agriculturally affected groundwater that can enhance the mobility of arsenic from aquifer sediments.

Quantifying the Eroded and Deposited Mass of Mercury-Contaminated Sediment by Using Terrestrial Laser Scanning at the Confluence of Humbug Creek and the South Yuba River, Nevada County, California, 2011–13

U.S. Geological Survey (USGS) | October 24th, 2019

High-resolution, terrestrial laser scanning, also known as ground-based lidar (light detection and ranging), was used to quantify the volume of mercury-contaminated sedim

High-resolution, terrestrial laser scanning, also known as ground-based lidar (light detection and ranging), was used to quantify the volume of mercury-contaminated sediment eroded from an outcrop of historical placer-mining debris at the confluence of Humbug Creek and the South Yuba River in the Sierra Nevada foothills, about 17 kilometers northeast of Grass Valley, California, and delivered to a zone below an observed flood stage of the South Yuba River. Substantial quantities of mercury were used and lost to the environment from historical placer gold mining activities on the western slope of the Sierra Nevada, California, and recent studies have documented continued persistence of mercury and methylmercury concentrations in water, sediment, fish, and predatory invertebrates in the Yuba River drainage basin in relation to suspected mercury sources. To identify areas that have high levels of mercury contamination as possible remediation targets in the Yuba River drainage basin and other areas in the Sierra Nevada, the U.S. Geological Survey worked in cooperation with the Bureau of Land Management on this and other detailed studies. Malakoff Diggings, one of the largest hydraulic gold mines in the Sierra Nevada, is 3.5 kilometers north of the study site in the Humbug Creek subbasin. Terrestrial laser scanning was used to produce centimeter-scale, three-dimensional maps of the complex outcrop surface, which was composed of an upper erosional area (cliff and over-steepened slope) and a lower depositional area (colluvial slope). The outcrop could not be mapped non-destructively or in sufficient detail by traditional surveying techniques. The study site, which was approximately 70 meters long, 30 meters wide and 20 meters high, was surveyed four times in 2 years (December 15, 2011; October 25, 2012; January 4, 2013; and November 22, 2013) to determine volumetric differences in the upper erosional and lower depositional areas between surveys. Measured changes in volume for the upper erosional area and lower depositional area were multiplied by the corresponding sediment density so that a mass-balance relationship, between the eroded and deposited sediment during each period, could be used to estimate the amount of mercury-contaminated sediment that was transported to below the base of the colluvial slope, where it could be mobilized by the South Yuba River during a flood having a 5-to-10-year recurrence interval. On December 2, 2012, a flood of this estimated magnitude reached the base of the colluvial slope. Between the first and second surveys (December 15, 2011–October 25, 2012), an estimated mass of 18±9.2 kilograms of sediment was transported from steeper slopes to the gently sloping river bank below the base of the colluvial slope. Between the second and third surveys (October 25, 2012–January 4, 2013), an atmospheric river caused heavy precipitation at the study site during late November and early December 2012. This short-duration, high-intensity rain resulted in a large amount of erosion and deposition at the study site and also caused high streamflow (flood stage) in the South Yuba River. From October 2012 to January 2013, 51±31 kilograms of sediment was transported to below the base of the colluvial slope, that is, below the high-water mark of December 2, 2012. Between the third and fourth surveys (January 4, 2013–November 22, 2013), an additional 10±26 kilograms of sediment was transported to below the base of the colluvial slope. During the 24 months of the study, the total mass of sediment delivered below the base of the colluvial slope and the high-water mark of December 2, 2012, was 79±66 kilograms. In any given year there is a 10–20-percent chance (5-to-10-year recurrence interval) of a flood equal to or greater than that of the December 2, 2012, flood, which could transport mercury-contaminated sediment at the study site into the South Yuba River. Hydraulically modeled estimates of the South Yuba River stage during floods having a 50- and 100-year recurrence interval (2- and 1-percent annual exceedance probability, respectively) indicated that resulting river stages could be 2.2–3.0 meters above the base of the colluvial slope, or 2.2–3.0 meters above the high-water mark of December 2, 2012. Such high river stages would be likely to inundate the lower half of the colluvial slope and mobilize a substantial volume of mercury-contaminated sediment to downstream areas.

Rapid groundwater decline and some cases of recovery in aquifers globally

Nature Portfolio (Springer Nature) | January 24th, 2024

Rapid vegetation redistribution in Southern California during the early 2000s drought

American Geophysical Union (AGU) | August 31st, 2012

Climate change in semi-arid, midlatitude mountain environments is expected to shift the spatial patterns of temperature, water availability, and vegetation upslope. Veg

Climate change in semi-arid, midlatitude mountain environments is expected to shift the spatial patterns of temperature, water availability, and vegetation upslope. Vegetation growing near its low-elevation range limit may prove especially vulnerable to mortality and decline. We investigated the altitudinal pattern of conifer mortality that occurred from 2002 to 2004 in Southern California’s San Jacinto Mountains. We found that conifer mortality was focused in the lower portion of the midmontane conifer range, which drove the midmontane conifer distribution upslope. We investigated past reports of conifer mortality in Southern California by searching historical newspaper accounts. We found evidence of previous episodes of conifer mortality that coincided with past droughts, and which may have caused vegetation redistribution in the past. We interpret the early2000s mortality and associated vegetation redistribution as a response to natural decadal tocentennial climate variability. Moreover, we hypothesize this response mode will dominatethe early impact of global climate change on semi-arid forest, which, in turn, may complicate efforts to distinguish between ecological changes attributable to natural climate variability and those attributable to global climate change.

Recent global decline in endorheic basin water storages

Nature Portfolio (Springer Nature) | November 30th, 2018

Endorheic (hydrologically landlocked) basins spatially concur with arid/semi-arid climates. Given limited precipitation but high potential evaporation, their water storag

Endorheic (hydrologically landlocked) basins spatially concur with arid/semi-arid climates. Given limited precipitation but high potential evaporation, their water storage is vulnerable to subtle flux perturbations, which are exacerbated by global warming and human activities. Increasing regional evidence suggests a probably recent net decline in endorheic water storage, but this remains unquantified at a global scale. By integrating satellite observations and hydrological modelling, we reveal that during 2002–2016 the global endorheic system experienced a widespread water loss of about 106.3 Gt yr−1, attributed to comparable losses in surface water, soil moisture and groundwater. This decadal decline, disparate from water storage fluctuations in exorheic basins, appears less sensitive to El Niño–Southern Oscillation-driven climate variability, which implies a possible response to longer-term climate conditions and human water management. In the mass-conserved hydrosphere, such an endorheic water loss not only exacerbates local water stress, but also imposes excess water on exorheic basins, leading to a potential sea level rise that matches the contribution of nearly half of the land glacier retreat (excluding Greenland and Antarctica). Given these dual ramifications, we suggest the necessity for long-term monitoring of water storage variation in the global endorheic system and the inclusion of its net contribution to future sea level budgeting.