Promoting atmospheric-river and snowmelt fueled biogeomorphic processes by restoring river-floodplain connectivity in California’s Central Valley

Springer | April 30th, 2015

Potential biogeomorphic benefits from intentional levee breaks and weir overflow on the managed floodplain-river system of California’s Sacramento and San Joaquin River

Potential biogeomorphic benefits from intentional levee breaks and weir overflow on the managed floodplain-river system of California’s Sacramento and San Joaquin River watershed (Central Valley) are discussed here. Prior to the nineteenth century, the system was characterized by natural levees alongside complex multichanneled rivers and tributaries, and geomorphic processes such as channel migration and avulsion, typical in lowland floodplain-river systems globally, dominated. Today, the floodplain-river system has been heavily modified with infrastructure such as levee embankments that disconnect floodplains from channels and diminish key processes of floodplain-river ecology. Unintentional levee breaks in river systems where floodplains have been developed for agriculture or urban uses still occur regularly (in a quarter of twentieth century years) and are sometimes catastrophic. Floodplain inundation, erosion, and sedimentation, the dominant geomorphic processes that occur during unintentional levee breaks, are flood risks in such embanked river systems. Climate and flood variability still dictate the frequency of unintentional levee breaks despite many decades of engineering. Of particular consequence are the so-called atmospheric-river (AR) storms. Since 1951, 81 % of breaks have occurred as a result of AR storms and flooding, while most of the rest occurred during snowmelt floods. Intentional levee breaks or planned weir overflows that are designed for floodplain restoration can facilitate a return towards more natural and dynamic biogeomorphic processes. In areas where room for flood-driven geomorphic processes is available on floodplains, local sediment scour and deposition near a levee break promote topographic diversity that enhances vegetation establishment and floodplain habitat. This chapter summarizes our current understanding of climate processes and flood variability that govern unintentional levee breaks or weir overflow. We also review examples of alternative flood management approaches in the Central Valley that promote processes necessary to restore or sustain lowland floodplain biogeomorphology. Future climate-driven changes in flood regime, such as enhanced flooding during winter months or more frequent atmospheric rivers, could be accommodated by additional intentional levee breaks or planned weir overflow for restoration. Implementation of these alternatives could be used to improve restoration policy and management of floods in embanked river floodplains.

Quality of Groundwater Used for Domestic Supply in the Modesto, Turlock, and Merced Subbasins of the San Joaquin Valley, California

U.S. Geological Survey (USGS) | January 6th, 2023

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domes

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domestic and small-system drinking-water supply wells in the Modesto, Turlock, and Merced subbasins of the San Joaquin Valley where more than 78,000 residents are estimated to use privately owned domestic wells. Results indicate that inorganic and organic constituents in groundwater were respectively present above regulatory (maximum contaminant level, MCL) benchmarks for public drinking-water quality in 37 percent and 9 percent of the aquifer area used for domestic drinking-water supplies (herein, “domestic groundwater resources”). The most prevalent inorganic constituents exceeding regulatory benchmarks were nitrate, uranium, and arsenic. The only organic constituents exceeding regulatory benchmarks were the fumigant constituents 1,2,3-trichloropropane (1,2,3-TCP) and 1,2-dibromo-3-chloropropane (DBCP), but the herbicides atrazine and simazine were detected at low concentrations below one-tenth of regulatory benchmarks in 30 percent of domestic groundwater resources. Total dissolved solids (TDS) and manganese exceeded aesthetic-based (secondary maximum contaminant level [SMCL]) benchmarks for drinking water in 3 percent and 13 percent of domestic groundwater resources, respectively. Per- and polyfluoroalkyl substances (PFAS) were detected in 23 percent of domestic groundwater resources, with 4 percent exceeding California state notification or response levels for specific compounds. Total coliform bacteria were detected in 20 percent of domestic groundwater resources. Elevated concentrations of nitrate, uranium, TDS, and pesticides (fumigant constituents and herbicides) are related to agricultural land use and were typically present at shallow depths up to 75 meters below land surface. Agriculturally derived constituents were detected in wells screened below the Corcoran Clay Member of the Tulare Formation (herein, “Corcoran Clay”) in the southeastern part of the study area, where the Corcoran Clay tends to be shallower and thinner than in areas to the northwest. Nitrate, uranium, and TDS were most prevalent in the northwest part of the study area proximal to the valley trough where soils are poorly drained and agricultural land uses are predominantly grain, alfalfa, and dairy farms. Pesticides tended to occur in groundwater below coarse-grained surficial deposits and within a northwest to southeast trending band along the eastern extent of the Corcoran Clay that typically demarcates the western extent of well-drained soils associated with perennial orchard crops. Elevated concentrations of arsenic tended to occur west of this band in reducing groundwater but also sometimes co-occurred with elevated nitrate in oxic groundwater, most likely because of geochemical conditions in agriculturally affected groundwater that can enhance the mobility of arsenic from aquifer sediments.

Quality of Groundwater Used for Domestic Supply in the Northern San Joaquin Valley, California

U.S. Geological Survey (USGS) | July 28th, 2021

 Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Moni

 Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project (PBP) of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and provides increased public access to groundwater-quality information. Private domestic and small-system drinking-water wells in the Northern San Joaquin Valley (NSJV) were the target for this assessment. These wells tend to pump water from shallower parts of alluvial aquifers compared to deeper, long-screened public-supply wells in the region. 

Quantification of record-breaking subsidence in California’s San Joaquin Valley

Nature Portfolio (Springer Nature) | November 19th, 2024

Quantifying anthropogenic contributions to century-scale groundwater salinity changes, San Joaquin Valley, California, USA

Science of the Total Environment (Elsevier) | June 15th, 2018

Total dissolved solids (TDS) concentrations in groundwater tapped for beneficial uses (drinking water, irrigation, freshwater industrial) have increased on average by abo

Total dissolved solids (TDS) concentrations in groundwater tapped for beneficial uses (drinking water, irrigation, freshwater industrial) have increased on average by about 100 mg/L over the last 100 y ears in the San Joaquin Valley, California (SJV). D uring this period land use in the SJV changed from natural vegetation and dryland agriculture to dominantly irrigated agriculture with growing urban areas. Century-scale salinity trends were evaluated by comparing TDS concentrations and major ion compositions of groundwater from wells sampled in 1910 (Historic) to data from wells sampled in 1993 –2015 (Modern). TDS concentrations in subregions of the SJV, the southern (SSJV), western (WSJV), northeastern (NESJV), and southeastern (SESJV) were calculated using a cell-declustering method. TDS concentrations increased in all regions, with the greatest increases found in the SSJV and SESJV. Evaluation of the Modern data from the NESJV and SESJV found higher TDS concentrations in recently recharged (post-1950) groundwater from shallow (b50 m) wells surrounded predominantly by agricultural land uses, while premodern (pre-1950) groundwater from deeper wells, and recently recharged groundwater from wells surrounded by mainly urban, natural, and mixed land uses had lower TDS concentrations, approaching the TDS concentrations in the Historic groundwater. For the NESJV and SESJV, inverse geochemical modeling with PHREEQC indicated that weathering of primary silicate minerals accounted for the majority o f the increase in TDS concentrations, contributing more than nitrate from fertilizers and sulfate from soil amendments combined. Bicarbonate showed the greatest increase among major ions, resulting from enhanced silicate weathering due to recharge of irrigation water enriched in CO2 during the growing season. The results of this study demonstrate that large anthropogenic changes to the hydrologic regime, like massive development of irrigated agriculture in semi-arid areas like the SJV, can cause large changes in groundwater quality on a regional scale.

Rapid subsidence over oil fields measured by SAR interferometry: Geophysical Research Letters

American Geophysical Union (AGU) | September 1st, 1998

The Lost Hills and Belridge oilfields are in the San Joaquin Valley, California. The major oil reservoir is high porosity and low permeability diatomite. Extraction of la

The Lost Hills and Belridge oilfields are in the San Joaquin Valley, California. The major oil reservoir is high porosity and low permeability diatomite. Extraction of large volumes from shallow depths causes reduction in pore pressure and subsequent compaction, forming a surface sub- sidence bowl. We measure this subsidence from space using interferometric analysis of SAR (Synthetic Aperture Radar) data collected by the European Space Agency Remote Sensing Satellites (ERS-1 and ERS-2). Maximum subsidence rates are as high as 40 mm in 35 days or > 400 mm/yr, measured from interferograms with time separations ranging from one day to 26 months. The 8- and 26-month inter-ferograms contain areas where the subsidence gradient exceeds the measurement possible with ERS SAR, but shows increased detail in areas of less rapid subsidence. Synoptic mapping of subsidence distribution from satellite data powerfully complements ground-based techniques, permits measurements where access is difficult, and aids identification of underlying causes

Recent and Forecasted Increases in Coccidioidomycosis Incidence Linked to Hydroclimatic Swings, California, USA

U.S. Centers for Disease Control and Prevention (CDC) | March 4th, 2025

Incidence of coccidioidomycosis, an emerging infectious disease caused by Coccidioides spp. fungi, has increased dramatically since 2000. In 2023, California, USA, report

Incidence of coccidioidomycosis, an emerging infectious disease caused by Coccidioides spp. fungi, has increased dramatically since 2000. In 2023, California, USA, reported a near-record 9,054 coccidioidomycosis cases (only surpassed by 9,093 cases in 2019). During April 2023–March 2024, a period capturing the full seasonal rise and fall in incidence, California reported 10,519 cases, 39% higher than the same period the previous year. The 2023 spike in incidence might be attributable, in part, to a swing from extreme drought to heavy precipitation during winter 2022–2023. Transitions from dry to wet years have been linked to increased coccidioidomycosis incidence. Soil moisture during wet winters is hypothesized to support fungal growth, contributing to an abundance of spores available for airborne dispersal during hot, dry conditions characteristic of summer and early fall. Drought preceding rainy seasons might enhance fungal growth by eliminating microbial competitors from soils or by affecting rodent populations, a putative reservoir host and nutrient source for the fungus. During 2020–2022, California experienced severe drought. An unusually wet winter followed in 2022–2023; statewide precipitation exceeded 150% of average, among the top 10 wettest seasons in the past century. Statewide precipitation during the 2023–2024 wet season was 115% of the long-term average, marking the second consecutive wetter-than-average season after a severe drought. That pattern suggested high coccidioidomycosis incidence might continue throughout the 2024 transmission year. We developed a disease forecast to guide public health alerts and messages by pinpointing when and where disease risk is expected to be highest. Such targeted messaging can raise awareness about disease risk, leading to earlier diagnosis and more effective disease management.

Regional Governance of Flood Management in the Central Valley

California Department of Water Resources (DWR) | May 30th, 2014

California faces significant challenges in managing its highly variable water resources, particularly as climate change and a growing population exacerbate drought and fl

California faces significant challenges in managing its highly variable water resources, particularly as climate change and a growing population exacerbate drought and flood risks.  The California Department of Water Resources (DWR) and other state agencies have been encouraging integrated approaches to water management, taking into account the connections between water supply, water quality, flood protection, and ecosystem health. The recent California Water Action Plan calls for improved coordination between local, state and federal agencies and tribal governments in order to develop multi-­benefit water management strategies. Regional-­scale planning has become a crucial avenue for advancing these efforts. Initiated in 2002, the Integrated Regional Water Management Planning (IRWM) process has led to the formation of 48 water planning regions statewide, in which diverse local agencies have developed integrated plans for managing all aspects of a region’s water management. More recently, a Regional Flood Management Planning (RFMP) process was created in the context of the Central Valley Flood Protection Plan to advance integrated approaches to reducing flood risks. Six flood planning regions, overlapping with nine IRWM regions, were formed in 2012. This study analyzes the origins and functioning of the IRWM and RFMP processes, and the degree of coordination between them to address flood risks in the Central Valley. In particular, it examines how each is working to generate multi-­benefit strategies, and how they account for climate change. It also discusses opportunities for future coordination between the IRWM and RFMP processes, and DWR’s role in supporting this. This study is primarily based upon an analysis of publicly available documents related to the IRWM and RFMP processes. It is also informed by meeting observations and conversations with staff at DWR and the Central Valley Flood Protection Board, and participants in IRWM and RFMP processes. Since RFMPs were not yet completed at the time of this writing, this study’s findings are preliminary. Nonetheless, this report provides an indication of the overall functioning of these RFMP and IRWM regions, and some general considerations for DWR as it assesses next steps in supporting these programs.

Regional nitrate and pesticide trends in ground water in the eastern San Joaquin Valley, California

American Society of Agronomy (ASA) | September 18th, 2008

Protection of ground water for present and future use requires monitoring and understanding of the mechanisms controlling long-term quality of ground water. In this stu

Protection of ground water for present and future use requires monitoring and understanding of the mechanisms controlling long-term quality of ground water. In this study, spatial and temporal trends in concentrations of nitrate and pesticides in ground water in the eastern San Joaquin Valley, California, were evaluated to determine the long-term effects of agricultural and urban development on regional ground-water quality. Trends in concentrations of nitrate, the nematocide 1,2-dibromo-3-chloropropane, and the herbicide simazine during the last two decades are generally consistent with known nitrogen fertilizer and pesticide use and with the position of the well networks in the regional ground-water fl ow system. Concentrations of nitrate and pesticides are higher in the shallow part of the aquifer system where domestic wells are typically screened, whereas concentrations are lower in the deep part of the aquifer system where public-supply wells are typically screened. Attenuation processes do not seem to significantly affect concentrations. Historical data indicate that concentrations of nitrate have increased since the 1950s in the shallow and deep parts of the aquifer system. Concentrations of nitrate and detection of pesticides in the deep part of the aquifer system will likely increase as the proportion of highly affected water contributed to these wells increases with time. Because of the time of travel between the water table and the deep part of the aquifer system, current concentrations in public-supply wells likely reflect the effects of 40- to 50-year-old management practices.

Relative risk of groundwater-quality degradation near California (USA) oil fields estimated from 3H, 14C, and 4He

Applied Geochemistry (Elsevier) | June 5th, 2021

 Relative risks of groundwater-quality degradation near selected California oil fields are estimated by examining spatial and temporal patterns in chemical and isotopic

 Relative risks of groundwater-quality degradation near selected California oil fields are estimated by examining spatial and temporal patterns in chemical and isotopic data in the context of groundwater-age categories defined by tritium and carbon-14. In the Coastal basins, western San Joaquin Valley (SJV), and eastern SJV; 82, 76, and 0% of samples are premodern (pre-1953 recharge), respectively; and 3, 0, and 31% are modern (recharged during or after 1953), respectively. Carbon-14 and helium-4 data indicate most premodern samples are 1000 to 10,000 (33%) or >10,000 (50%) years old. Organic chemicals that could be associated with deeper hydrocarbon reservoirs (e.g. thermogenic gases and benzene) occur most frequently in premodern groundwater, suggesting premodern groundwater has a higher risk of degradation from upward migration of hydrocarbons than modern and mixed-age groundwater. Low sulfate concentrations in some premodern groundwater containing high thermogenic-methane concentrations (>28 mg/L) indicate methane attenuation associated with sulfate reduction can be limited in premodern groundwater. The more common occurrence of manufactured compounds, like tetrachloroethene, in modern and mixed-age groundwater than in premodern groundwater indicates modern and mixed-age groundwater has a higher risk of degradation from land-surface sources than premodern groundwater. Time-series data for chloride in groundwater affected by disposal of oil-field water in unlined ponds indicate some modern and mixed-age groundwater are susceptible to chemical migration within 2–3 km of surface sources. Timescales for diluting chloride concentrations in groundwater with fresh recharge once disposal ponds are decommissioned are shorter in mixed-age groundwater with large fractions of modern water (9–14 years in one example) than in mixed-age groundwater with large fractions of premodern water (no evidence of dilution after 12 years of monitoring in one example). The presence of predominantly premodern groundwater in the Coastal basins and western SJV indicates these areas have relatively high risk from upward migration of hydrocarbons, reduced methane attenuation capacity, and long dilution times, whereas predominantly modern-and mixed-age groundwater in the eastern SJV indicates this area has relatively high risk from chemical migration from land-surface sources and subsequent extensive spreading. Age-based characterizations of relative risk could inform the design of groundwater-monitoring programs near oil fields in terms of the spatial distribution of monitoring points relative to source areas and monitoring frequency and duration.