Hydrology, Ecology, and Fishes of the Klamath River Basin (2008)

National Academy of Sciences (NAS) | January 1st, 2008

The Klamath River basin, which spans parts of southern Oregon and northern California, has been the focus of a prominent conflict over competing uses for water. Manag

The Klamath River basin, which spans parts of southern Oregon and northern California, has been the focus of a prominent conflict over competing uses for water. Management actions to protect threatened and endangered fish species in the basin have left less water available for irrigation in dry years and heightened tensions among farmers and other stakeholders including commercial fishermen, Native Americans, conservationists, hunters, anglers, and hydropower producers. This National Research Council report assesses two recent studies that evaluate various aspects of flows in the Klamath basin: (1) the Instream Flow Phase II study (IFS), conducted by Utah State University, and (2) the Natural Flow of the Upper Klamath Basin study (NFS), conducted by the U.S. Bureau of Reclamation (USBR). The report concludes that both studies offer important new information but do not provide enough information for detailed management of flows in the Klamath River, and it offers many suggestions for improving the studies. The report recommends that a comprehensive analysis of the many individual studies of the Klamath river basin be conducted so that a big picture perspective of the entire basin and research and management needs can emerge. Key Messages If these conclusions were borne out by studies incorporating experimental flows and monitored responses, managers would be able to have greater confidence that decisions to increase flows would have a beneficial effect on anadromous fishes in the lower river The Instream Flow Study Phase II did not include important water-quality attributes, such as dissolved oxygen levels, nutrient loadings, contaminants, and sediment concentrations, although each has important implications for the vitality of the fish populations of the Klamath River. The Natural Flow Study and the Instream Flow Study Phase II were major science and engineering investigations, but the linkage of one to the other was only partially achieved. The Natural Flow Study was seriously compromised by several fundamental issues, including its choice of a basic approach for understanding natural flows, choices of the models for calculations, and serious omissions of factors likely to influence river flows at the Iron Gate Dam gauge site. The basin and its biota have changed so much in the past century that the implications for the fishes of restoring natural flows are not clear. The committee concluded that the Natural Flow Study includes calculated flows that are at best first approximations to useful estimates of such flows. The committee found important shortcomings in the Instream Flow Study Phase II and its use of various models and data. Two major shortcomings use of monthly data and lack of tributary analyses are so severe that that they should be addressed before decision makers can use the outputs of the study to establish precise flow regimes with confidence. The most important outcome of the Instream Flow Study was that it indicated that increases in existing flows downstream from Iron Gate Dam probably would benefit fish populations through improved physical habitat associated with more water and through reduced water temperatures. There was a lack of a thorough assessment of the relationship between flow-data time series and the behavior of different species and life stages and the population dynamics of coho and Chinook salmon When the science needs for the basin are better characterized, the individual studies necessary to create a sound science-based body of knowledge for decision makers and managers will be more easily identified. current flow regime. These are improvements in flow because they include intra- and inter-annual variations and probably will enhance Chinook salmon growth and young-of-the-year production. is not possible to know how well the recommendations apply to any one species or to all the species as a whole. Indeed, most of the information was from Chinook salmon, which suggests that confidence in its applicability to that species would be greater than to other species. of the representativeness of the reaches used for detailed study, and the statistical approach to analyze the calculated set of instream flows did not use normalized data and did not have provisions for identifying serial autocorrelations.

Hydrology, Hydraulics, and Water Management Technical Report

U.S. Bureau of Reclamation (USBR) | December 15th, 2014

This Technical Report describes pertinent hydrologic and hydraulic condition and water management operations for Shasta Lake, the Sacramento River, the Delta, and the CVP

This Technical Report describes pertinent hydrologic and hydraulic condition and water management operations for Shasta Lake, the Sacramento River, the Delta, and the CVP/State Water Project (SWP) service areas, under existing conditions, the No-Action Alternative, and the Action Alternatives for the SLWRI.

Hydrometeorological characteristics of rain-on-snow events associated with atmospheric rivers

American Geophysical Union (AGU) | March 29th, 2016

Atmospheric rivers (ARs) are narrow, elongated, synoptic corridors of enhanced water vapor transport that play an important role in regional weather/hydrology. Rain-on-s

Atmospheric rivers (ARs) are narrow, elongated, synoptic corridors of enhanced water vapor transport that play an important role in regional weather/hydrology. Rain-on-snow (ROS) events during ARs present enhanced flood risks due to the combined effects of rainfall and snowmelt. Focusing onCalifornia’s Sierra Nevada, the study identifies ROS occurrences and their connection with ARs during the 1998–2014 winters. AR conditions, which occur during 17% of all precipitation events, are associated with 50% of ROS events (25 of 50). Composite analysis shows that compared to ARs without ROS, ARs with ROS areon average warmer by ~2 K, with snow water equivalent loss of ~0.7 cm/d (providing 20% of the combined water available for runoff) and ~50% larger streamflow/precipitation ratios. Atmospheric Infrared Sounderretrievals reveal distinct offshore characteristics of the two types of ARs. The results highlight the potential value of observing these events for snow, rain, and flood prediction.

Hydropower capacity factors trending down in the United States

Nature Portfolio (Springer Nature) | June 27th, 2024

Hyper-Salinity Toxicity Thresholds for Nine California Ocean Plan Toxicity Test Protocols

California State Water Resources Control Board (SWRCB) | July 1st, 2012

A growing number of coastal cities in California are exploring the potential for ocean desalination as a means to augment freshwater supplies. There are currently a numbe

A growing number of coastal cities in California are exploring the potential for ocean desalination as a means to augment freshwater supplies. There are currently a number of desalination facilities proposed or operating in California. The process of desalination most commonly utilizes reverse osmosis (RO) to remove salts from groundwater, reclaimed water, and seawater. This process results in production of hypersaline reject brine. This reject brine may be discharged into the marine environment, sometimes in combination with discharge from a sewage treatment plant or power plant effluent. Typical RO reject brine produced using 100% seawater can have approximately twice the original salt content of seawater. In order to ensure that brine discharges do not pose risk to coastal receiving waters, it is anticipated that desalination plants will be required to monitor effluent toxicity. Monitoring requirements will likely include testing for effluent toxicity using some combination of the short-term chronic toxicity test protocols listed in the 2009 California Ocean Plan (SWRCB, 2009). While the tests listed in the Ocean Plan have been the subject of ongoing research, no comprehensive studies of the effects of hyper-salinity have been conducted with all seven toxicity test organisms (nine protocols when including sand dollar and urchin fertilization endpoints). The results from these tests will allow determination of the toxicity of hypersaline brine in the absence of any additional toxic constituents that may be produced during the desalination process. These results provide resource managers with background information to facilitate interpretation of toxicity test results from desalination plant effluent testing and permitting of desalination facilities. The results will also be used in the development of an amendment to the California Ocean Plan that addresses impacts to marine life from intakes and discharges from desalination facilities.

Hyperspectral characterization of wastewater in the Tijuana River Estuary using laboratory, field, and EMIT satellite spectroscopy

Elsevier | May 8th, 2025

Hundreds of millions of liters of untreated wastewater are discharged into the Tijuana River annually, impacting communities on both sides of the US-Mexico border. Curren

Hundreds of millions of liters of untreated wastewater are discharged into the Tijuana River annually, impacting communities on both sides of the US-Mexico border. Current monitoring methods are resource-intensive and limited in coverage. Optical satellite imaging may enable broader spatiotemporal monitoring, yet retrievals of bacterial concentrations and other key water quality indicators remain challenging. Here we investigate the utility of spectroscopic sensors to monitor the presence of wastewater in this estuarine-coastal system, as a proxy for bacterial concentrations and other water quality parameters. We prepared dilutions of untreated wastewater and uncontaminated seawater, measuring visible through shortwave infrared (VSWIR; 350–2500 nm) reflectance spectra of each sample. At high wastewater concentrations, a distinct spectral feature centered near 620 nm strongly correlated with paired water quality measurements (R2 ≥ 0.97, p-value < 0.01). This feature is additionally observed in multispectral resolution, in field observations, and in hyperspectral satellite imagery. An example application of plume mapping with this feature is presented, representing one of the earliest adoptions of EMIT hyperspectral satellite imagery for water quality monitoring. These results are promising for the use of spectroscopic sensors to map and monitor wastewater pollution in the Tijuana River Estuary and potentially, similarly polluted coastal and estuarine systems.

Identification of Bacteria in Groundwater Used for Domestic Supply in the Southeast San Joaquin Valley, California, 2014

U.S. Geological Survey (USGS) | June 22nd, 2021

Groundwater is an important source of drinking water in California. Water-borne diseases caused by microbial contamination are a growing concern. The MI test, a membrane

Groundwater is an important source of drinking water in California. Water-borne diseases caused by microbial contamination are a growing concern. The MI test, a membrane filtration method for the chromogenic-/-fluorogenic detection of total coliforms and Escherichia coli, was used for samples collected January to April 2014 from 42 domestic wells in the southeastern San Joaquin Valley. The wells were sampled as part of the Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP), a cooperative study between the U.S. Geological Survey and the California State Water Resources Control Board. Polymerase chain reaction analysis and sequencing of deoxyribonucleic acid (DNA) were used for 34 target and nontarget colonies that grew on the MI media from samples collected from 13 of the domestic wells to identify what genera of bacteria could exist in groundwater used by domestic wells. Gene sequences obtained using the Sanger method were entered into the basic local alignment search tool (BLAST) database, and 17 genera of bacteria were identified. Of these, 13 genera contain species that are human pathogens or opportunistic human pathogens. All the genera that include human pathogens are naturally present in soil, plants, or water; one of the pathogens also can be found in fecal matter. Six of the human pathogens were from non-target colony growth on the MI media. Target and non-target microbial growth on MI media are indicators of the possible presence of pathogenic bacteria even if the bacteria naturally are from soil rather than from a fecal source.

Identification of Bacteria in Groundwater Used for Domestic Supply in the Southeast San Joaquin Valley, California, 2014

U.S. Geological Survey (USGS) | June 22nd, 2021

Groundwater is an important source of drinking water in California. Water-borne diseases caused by microbial contamination are a growing concern. The MI test, a membrane

Groundwater is an important source of drinking water in California. Water-borne diseases caused by microbial contamination are a growing concern. The MI test, a membrane filtration method for the chromogenic / fluorogenic detection of total coliforms and Escherichia coli, was used for samples collected January to April 2014 from 42 domestic wells in the southeastern San Joaquin Valley. The wells were sampled as part of the Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP), a cooperative study between the U.S. Geological Survey and the California State Water Resources Control Board. Polymerase chain reaction analysis and sequencing of deoxyribonucleic acid (DNA) were used for 34 target and nontarget colonies that grew on the MI media from samples collected from 13 of the domestic wells to identify what genera of bacteria could exist in groundwater used by domestic wells. Gene sequences obtained using the Sanger method were entered into the basic local alignment search tool (BLAST) database, and 17 genera of bacteria were identified. Of these, 13 genera contain species that are human pathogens or opportunistic human pathogens. All the genera that include human pathogens are naturally present in soil, plants, or water; one of the pathogens also can be found in fecal matter. Six of the human pathogens were from non-target colony growth on the MI media. Target and non-target microbial growth on MI media are indicators of the possible presence of pathogenic bacteria even if the bacteria naturally are from soil rather than from a fecal source.

Identification of fresh submarine groundwater off the coast of San Diego, USA, using electromagnetic methods

Hydrogeology Journal (Springer) | March 1st, 2022

Climate change has a pronounced effect on water resources in many semiarid climates, causing populated areas such as San Diego County (USA), to become more vulnerable to

Climate change has a pronounced effect on water resources in many semiarid climates, causing populated areas such as San Diego County (USA), to become more vulnerable to water shortages in the coming decades. To prepare for decreased water supply, San Diego County is adopting policies to decrease water use and to develop additional local sources of water. One new local source of freshwater is produced by a desalination facility that purifies brackish groundwater from the coastal San Diego Formation. This formation has been studied extensively onshore, but little is known about the geology or groundwater quality offshore in the adjacent continental shelf. Because most groundwater systems are interconnected and complex, further analysis is needed to identify offshore geology, possible sequestration of freshwater in the shelf, and potential pathways for saltwater intrusion. This comprehensive understanding is important because seawater intrusion may limit use of the San Diego Formation and longevity of desalination facilities. Controlled-source electromagnetic methods are uniquely suited to detecting offshore groundwater as they are sensitive to changes in pore fluids such as the transition from fresh to brackish groundwater. This paper describes results from surface-towed electromagnetic surveys that mapped the pore-fluid salinity and possible fluid pathways in the continental shelf off the coast of San Diego. The results indicate a considerable volume of fresh-to-brackish groundwater sequestered in the shelf, both in continuous lenses and isolated pockets, that appear influenced by fault systems and shallow stratigraphy.

Identifying American climate change free riders and motivating sustainable behavior

Nature Portfolio (Springer Nature) | March 19th, 2024