Independent Review Panel Report for the 2016 California WaterFix Aquatic Science Peer Review

Delta Stewardship Council (Delta Council) | May 12th, 2016

This report presents the findings of the 2016 California WaterFix Aquatic Science Peer Review. An Independent Review Panel was convened by the Delta Science Program to pr

This report presents the findings of the 2016 California WaterFix Aquatic Science Peer Review. An Independent Review Panel was convened by the Delta Science Program to provide the National Marine Fisheries Service (NMFS), U.S. Fish and Wildlife Service (USFWS), and California Department of Fish and Wildlife (CDFW) with an independent scientific evaluation of the methods and approaches for developing the joint Biological Opinion requirements and analyses prepared for the CDFW 2081(b) Incidental Take Permit application for the California WaterFix. The Panel was charged with reviewing: (1) selected sections of the Biological Assessment (BA) that seeks to predict the effects of the WaterFix project on Endangered Species Act (ESA)-listed species and their designated critical habitats, (2) the draft Analytical Approach to developing the joint Biological Opinion (AABO) and (3) the proposed methods for assessing project effects on Longfin Smelt. After reviewing a set of documents (Appendix 1), the Panel participated in a public meeting in Sacramento, CA on April 5-6, 2016. On the first day of this meeting, the Panel interacted with agency representatives following their presentations on the three topics above. On day 2, the Panel communicated and discussed its preliminary findings to agency representatives and the public. This report summarizes the Panel’s findings and recommendations in full detail.

Independent Review Panel Report for the 2016-2017 California WaterFix Aquatic Science Peer Review Phase 2B

Delta Stewardship Council (Delta Council) | March 7th, 2017

This report presents the findings of the 2016 California WaterFix (CWF) Aquatic Science Peer Review, Phase 2B. An Independent Review Panel (Panel; Appendix 1) was convene

This report presents the findings of the 2016 California WaterFix (CWF) Aquatic Science Peer Review, Phase 2B. An Independent Review Panel (Panel; Appendix 1) was convened by select staff of the Delta Science Program to provide the National Marine Fisheries Service (NMFS), U.S. Fish and Wildlife Service (FWS), and California Department of Fish and Wildlife (CDFW) with the views of experts not involved in the CWF Endangered Species Act (ESA) consultation and 2081(b) permit on the use of best available scientific information in the California WaterFix Incidental Take Permit (CWF ITP) application.  The agencies further requested review of the Adaptive Management Framework proposed to integrate future scientific research, monitoring, and decision making during construction and operations of CWF. Accordingly, the Panel was charged with reviewing NMFS’ analytical approach and FWS’ analytical framework, status of the species and critical habitat, environmental baseline, and effects analysis sections of the draft BiOps on CWF for all ESA- and California ESA (CESA)-listed aquatic species and their critical habitat (see Charge, Appendix 2). After reviewing the charge and a set of prescribed documents (Appendix 3), the Panel participated in a public meeting in Sacramento, CA on January 23-24, 2017. On the first day of this meeting, the Panel interacted with agency representatives after they gave presentations on the topics above. On the second day, the Panel communicated internally and then discussed its preliminary findings with agency representatives and the public (Appendix 4).

Initial Alternatives Information Report for the North/Central Delta Improvement Study (Delta Cross Channel, Franks Tract, and Through- Delta Facility Evaluation)

U.S. Bureau of Reclamation (USBR) | March 17th, 2010

The U.S. Department of the Interior (Interior) Bureau of Reclamation (Reclamation) and the California Department of Water Resources (DWR) are evaluating the feasibility o

The U.S. Department of the Interior (Interior) Bureau of Reclamation (Reclamation) and the California Department of Water Resources (DWR) are evaluating the feasibility of using conveyance and operations actions in the north and central region of the Sacramento–San Joaquin River Delta (Delta) to improve water quality and fish conditions. Specifically, Reclamation is evaluating the feasibility of these actions in the North/Central Delta Improvement Study (NoCDIS or Study). The Initial Alternatives Information Report (IAIR) identifies, discusses, and screens measures to address the problems and opportunities. These measures are used to develop initial alternatives. Initial alternatives from the IAIR will be incorporated into and refined in the subsequent Plan Formulation Report (PFR). Subject to continued appropriations and a determination of federal interest, the Study should culminate in an Environmental Impact Statement/Environmental Impact Report (EIS/EIR) and a Feasibility Report. Reclamation is the federal lead agency for National Environmental Policy Act (NEPA) compliance, and DWR is the state lead agency for California Environmental Quality Act (CEQA) compliance.

Innovation in Monitoring: The U.S. Geological Survey Sacramento–San Joaquin River Delta, California, Flow-Station Network

U.S. Geological Survey (USGS) | January 1st, 2016

The U.S. Geological Survey (USGS) installed the first gage to measure the flow of water into California’s Sacramento–San Joaquin River Delta from the Sacramento River

The U.S. Geological Survey (USGS) installed the first gage to measure the flow of water into California’s Sacramento–San Joaquin River Delta from the Sacramento River in the late 1800s. Today, a network of 35 hydro-acoustic meters measure flow throughout the delta. This region is a critical part of California’s freshwater supply and conveyance system. With the data provided by this flow-station network—sampled every 15 minutes and updated to the web every hour—state and federal water managers make daily decisions about how much freshwater can be pumped for human use, at which locations, and when. Fish and wildlife scientists, working with water managers, also use this information to protect fish species affected by pumping and loss of habitat. The data are also used to help determine the success or failure of efforts to restore ecosystem processes in what has been called the “most managed and highly altered” watershed in the country.

Instream flow evaluation: Temperature and passage assessment for salmonids in Mill Creek, Tehama County

California Department of Fish and Wildlife (CDFW) | May 8th, 2017

Mill Creek is among the essential streams for recovery and perpetuation of wild stocks of Central Valley spring-run Chinook salmon (Oncorhynchus tshawytscha), and support

Mill Creek is among the essential streams for recovery and perpetuation of wild stocks of Central Valley spring-run Chinook salmon (Oncorhynchus tshawytscha), and supports Central Valley steelhead trout (Oncorhynchus mykiss; Armentrout et al. 1998). In addition, Mill Creek is utilized by fall-run Chinook salmon, late fall-run Chinook salmon, and Pacific Lamprey (Entosphenus tridentatus). The Recovery Plan for Central Valley Chinook Salmon and Steelhead (NMFS 2014) classified Mill Creek as a high priority Core 1 watershed because of its potential to support independent viable populations. Mill Creek is also identified as a priority stream in the State Water Resources Control Board (SWRCB) Instream Flow Studies for the Protection of the Public Trust Resources: A Prioritized Schedule and Estimate of Cost (SWRCB 2010), and the US Fish and Wildlife Service (USFWS) Final Restoration Plan for the Anadromous Fish Restoration Program: A Plan to Increase Natural Production of Anadromous Fish in the Central Valley of California (USFWS 2001). The California Department of Fish and Wildlife (Department) has interest in ensuring that water flows within streams are maintained at levels which are adequate for long-term protection, maintenance, and proper stewardship of fish and wildlife resources. The Department’s Instream Flow Program develops scientific information to determine what flows are needed to maintain healthy conditions for fish and wildlife. For each species of interest, life stage, and stream, relationships between flow and habitat are developed. The Department recommends using the federal Instream Flow Incremental Methodology (IFIM) to evaluate and develop instream flow criteria for projects which may affect California’s aquatic resources. The IFIM process, and instream flow evaluations, in general, should include broad consideration of the structure and function of riverine systems while also providing examination of five core components (i.e., hydrology, biology, geomorphology, water quality, and connectivity) of the riverine system. The Public Resources Code (PRC) §10000-10005 outlines the Department’s responsibilities for developing and transmitting flow criteria to the SWRCB for consideration as set forth in 1257.5 of the Water Code. The results from this study are intended to be used, along with other supporting information and data, to identify stream flow requirements necessary for upstream passage of adult Chinook salmon and steelhead into the upper Mill Creek watershed pursuant to the Department’s PRC mandate. Flow criteria for lower Mill Creek will be developed by the Department in a future document.

Instream Flow Regime Recommendations, Big Sur River, Monterey County

California Department of Fish and Wildlife (CDFW) | September 23rd, 2016

The Department of Fish and Wildlife (Department) has interest in assuring that water flows within streams are maintained at levels which are adequate for long-term protec

The Department of Fish and Wildlife (Department) has interest in assuring that water flows within streams are maintained at levels which are adequate for long-term protection, maintenance and proper stewardship of fish and wildlife resources. The Department has developed recommended instream flow regimes for the Big Sur River, Monterey County for transmittal to the State Water Resources Control Board (Water Board) and consideration as set forth in 1257.5 of the Water Code. Submission of these flow recommendations to the Water Board complies with Public Resources Code (PRC) §10001-10002. The Department is recommending instream flow regimes for the lower Big Sur River from Pfeiffer Big Sur State Park at U.S. Geological Survey (USGS) Gage 11143000 downstream through Molera State Park. The recommendations are separated into six monthly hydrological condition types (i.e., critically dry, dry, below median, above median, wet, and extremely wet) and are presented in the form of an annual schedule for each of three mainstem river reaches (i.e., Lower Molera, Molera, and Campground). The recommended instream flow regimes are summarized in the current document, along with justification for the recommendations and reference to the data sources. The Department files the enclosed set of instream flow regime recommendations for the Big Sur River that we believe to be comprehensive and substantially complete. The recommendations were based upon information developed through recent PRC instream flow evaluations by the Department, and earlier information. The Department may revise its recommended instream flow regimes for the Big Sur River at a later date based upon any new scientific information that may become available.

Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity

Conservation Physiology (Society of Experimental Biology) | December 10th, 2020

The Sacramento splittail (Pogonichthys macrolepidotus) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allop

The Sacramento splittail (Pogonichthys macrolepidotus) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allopatric upstream spawning habitat of the Central Valley (CV) population connects with the sympatric rearing grounds via relatively low salinity waters, whereas the San Pablo (SP) population must pass through the relatively high-salinity Upper SFE to reach its allopatric downstream spawning habitat. We hypothesize that if migration through SFE salinities to SP spawning grounds is more challenging for adult CV than SP splittail, then salinity tolerance, osmoregulatory capacity, and metabolic responses to salinity will differ between populations. Osmoregulatory disturbances, assessed by measuring plasma osmolality and ions, muscle moisture and Na+-K+-ATPase activity after 168 to 336 h at 11 salinity, showed evidence for a more robust osmoregulatory capacity in adult SP relative to CV splittail. While both resting and maximum metabolic rates were elevated in SP splittail in response to increased salinity, CV splittail metabolic rates were unaffected by salinity. Further, the calculated difference between resting and maximum metabolic values, aerobic scope, did not differ significantly between populations. Therefore, improved osmoregulation came at a metabolic cost for SP splittail but was not associated with negative impacts on scope for aerobic metabolism. These results suggest that SP splittail may be physiologically adjusted to allow for migration through higher-salinity waters. The trends in interpopulation variation in osmoregulatory and metabolic responses to salinity exposures support our hypothesis of greater salinity-related challenges to adult CV than SP splittail migration and are consistent with our previous findings for juvenile splittail populations, further supporting our recommendation of population-specific management.

Investigating Factors Contributing to Phytoplankton Biomass Declines in the Lower Sacramento River

University of California, Davis (UC Davis) | March 23rd, 2023

Issue Paper for the San Joaquin River spring-run Chinook experimental population – Delta impacts

National Marine Fisheries Service (NMFS) | July 23rd, 2013

Juvenile Production Estimate (JPE) Calculation and Use/Application of Survival Data from Acoustically-tagged Chinook Salmon Releases Report

Delta Stewardship Council (Delta Council) | February 21st, 2014

Each year, NOAA’s National Marine Fisheries Service (NMFS) estimates the number of juvenile winter-run Chinook salmon expected to enter the Delta. NMFS’ June 4, 2009

Each year, NOAA’s National Marine Fisheries Service (NMFS) estimates the number of juvenile winter-run Chinook salmon expected to enter the Delta. NMFS’ June 4, 2009, biological and conference opinion on the long-term operation of the Central Valley Project and State Water Project provides an incidental take limit on natural juvenile winter-run based on the juvenile production estimate.