Evaluation of the California State Water Resource Control Board’s Bioassessment Program

California State Water Resources Control Board (SWRCB) | May 15th, 2009

The State of California’s bioassessment, monitoring and assessment (M&A), and water quality standards (WQS) programs were reviewed in January 2008 using the

The State of California’s bioassessment, monitoring and assessment (M&A), and water quality standards (WQS) programs were reviewed in January 2008 using the U.S. EPA’s Critical Technical Elements and Programmatic Review process (Barbour and Yoder 2008; Quasney and Yoder 2008), which evaluates key components of these state programs and existing and planned capacities. The review process results in technical, policy, and management recommendations for building, refining and maintaining functional and effective bioassessment and M&A tools that support the full spectrum of WQS and management programs. This review was conducted by a two-person review team with national expertise at evaluating, building, and implementing state and tribal programs. Bioassessment, the use of resident aquatic biota as direct indicators of the biological integrity of water bodies, is a powerful tool for water resource regulatory programs. The need for state water quality agencies to develop and maintain robust bioassessment programs is underscored by the National Research Council’s critical review of state TMDL, M&A, and WQS programs (National Research Council 2001). The NRC’s review makes clear that all states need better biological endpoints, adequate M&A, and tiered aquatic life uses (TALU) in order to develop and refine appropriate and effective WQS that result in more accurate and appropriate protection for biological resources. While the federal Clean Water Act (CWA) has long required states to protect and restore the chemical, physical, and biological integrity of the nation’s waters, the California Water Boards have only recently begun to develop the tools, expertise and capacity that they will need in order to implement modernized WQS that protect biological integrity. However, because of the substantial investment in the development of bioassessment tools made since the mid-1990s by the state’s Department of Fish and Game, California is now positioned to initiate the process of integrating bioassessments into its WQS and monitoring and assessment programs via the development and implementation of narrative and numeric biocriteria.

Evaluation of the characteristics, discharge, and water quality of selected springs at Fort Irwin National Training Center, San Bernardino County, California

U.S. Geological Survey (USGS) | March 29th, 2024

Eight springs and seeps at Fort Irwin National Training Center were described and categorized by their general characteristics, discharge, geophysical properties, and wat

Eight springs and seeps at Fort Irwin National Training Center were described and categorized by their general characteristics, discharge, geophysical properties, and water quality between 2015 and 2017. The data collected establish a modern (2017) baseline of hydrologic conditions at the springs. Two types of springs were identified: (1) precipitation-fed upland springs (Cave, Desert King, Devouge, No Name, and Panther Springs) and (2) groundwater discharge-fed basin springs (Garlic, Bitter, and Jack Springs). Comparison of electrical resistivity tomography data collected at groundwater basin springs from 2015 to 2017 indicated that spring discharge and connection to the underlying groundwater system is highly focused, although the springs themselves appear diffuse and are spread out over a large area.

Evaluation of water quality in the Langford Valley–Irwin Groundwater Subbasin, Fort Irwin National Training Center, California, 1993–2019

U.S. Geological Survey (USGS) | January 9th, 2026

The U.S. Army Fort Irwin National Training Center (NTC), 120 miles northeast of Los Angeles in the Mojave Desert of California, obtains its potable water supply from the

The U.S. Army Fort Irwin National Training Center (NTC), 120 miles northeast of Los Angeles in the Mojave Desert of California, obtains its potable water supply from the Bicycle Valley and Langford Valley groundwater basins; Langford Valley groundwater basin is further subdivided into the Langford Well Lake and Irwin groundwater subbasins. The Irwin groundwater subbasin contains younger, unconsolidated deposits that have a saturated thickness of as much as 200 feet (ft) and a lower aquifer within older unconsolidated deposits as thick as 650 ft. Groundwater recharge under predevelopment conditions (before 1941) occurred primarily from infiltration of intermittent streamflow in small washes that cross the Irwin groundwater subbasin. Since that time, groundwater recharge has increased because of growth of the NTC in recent years and as a result of other processes, including (1) infiltration of treated wastewater into the aquifer through ponds near the NTC wastewater treatment facility (WWTF) and (2) infiltration of imported water and treated wastewater used for landscape irrigation at base housing and athletic fields. Water samples were collected from 17 wells and analyzed for field parameters, chemical constituents, and isotope composition in the Irwin groundwater subbasin between 2014 and 2019. These data were supplemented with water- chemistry data collected during 1993–95 and at other times if available. Between 1993–95 and 2015–19, median dissolved solids and nitrate concentrations in water from wells in the Irwin groundwater subbasin increased from 620 to 1,030 milligrams per liter (mg/L) and from 2.8 to 4.5 mg/L as nitrogen, respectively. After 2014, dissolved solids and nitrate concentrations in water from wells near the NTC WWTF decreased as a result of changes in source water quality attributable to reverse osmosis of treated drinking water delivered within the Irwin groundwater subbasin and to increased levels of treatment at the NTC WWTF. Based on delta oxygen- 18 and delta deuterium isotope data, increases in dissolved solids concentrations in water from most wells were consistent with evaporation prior to recharge and mobilization of soluble salts from the unsaturated zone. Arsenic and fluoride concentrations in water from wells decreased between 1993–95 and 2015–19 as the basin filled with treated wastewater, but 2015–19 concentrations generally exceeded the California State Water Resources Control Board maximum contaminant levels of 10 micrograms per liter for arsenic and 2 mg/L for fluoride. Most groundwater in the Irwin groundwater subbasin has unadjusted carbon- 14 ages ranging from 18,400 to 12,350 years before present. However, water from well 10E3, located along the wash near the subbasin outflow in the southeastern part of the Irwin groundwater subbasin, contained measurable tritium, which is consistent with infiltration of intermittent streamflow and groundwater recharge from the wash after 1952. Chemical and isotopic data indicate that treated wastewater is present in water from most wells in the upper aquifer that underlies the Irwin groundwater subbasin. Wells were not sampled to adequately determine the extent of treated wastewater and changes in water quality within the lower aquifer that underlies the Irwin groundwater subbasin.

Extremophile hotspots linked to containerized industrial waste dumping in a deep-sea basin

Oxford University Press (OUP) | September 9th, 2025

Decaying barrels on the seafloor linked to DDT contamination have raised concerns about the public health implications of decades old industrial waste dumped off the coas

Decaying barrels on the seafloor linked to DDT contamination have raised concerns about the public health implications of decades old industrial waste dumped off the coast of Los Angeles. To explore their contents, we collected sediment cores perpendicular to five deepsea barrels. The concentration of DDT and its breakdown products were highly elevated relative to control sites yet did not vary with distance from the barrels, suggesting that they were not associated with the contamination. Sediment cores collected through white halos surrounding three barrels were enriched in calcite and had elevated pH. The associated microbial communities were low diversity and dominated by alkalophilic bacteria with metagenome-assembled genomes adapted to high pH. A solid concretion sampled between a white halo and barrel was composed of brucite, a magnesium hydroxide mineral that forms at high pH. Based on these findings, we postulate that leakage of containerized alkaline waste triggered the formation of mineral concretions that are slowly dissolving and raising the pH of the surrounding sediment pore water. This selects for taxa adapted to extreme alkalinity and drives the precipitation of “anthropogenic” carbonates forming white halos, which serve as a visual identifier of barrels that contained alkaline waste. Remarkably, containerized alkaline waste discarded >50 years ago represents a persistent pollutant creating localized mineral formations and microbial communities that resemble those observed at some hydrothermal systems. These formations were observed at one-third of the visually identified barrels in the San Pedro Basin and have unforeseen, long-term consequences for benthic communities in the region.

Feather River Hydrologic Observatory: Improving Hydrological Snowpack Forecasting for Hydropower Generation Using Intelligent Information Systems

California Energy Commission (CEC) | August 31st, 2018

Changing climatic conditions and a lack of representative snow cover data challenge the ability to accurately model and fully utilize the water resources of montane snowp

Changing climatic conditions and a lack of representative snow cover data challenge the ability to accurately model and fully utilize the water resources of montane snowpack on which California depends. This project aims to improve scientific understanding of snowpack modeling and streamflow forecasting techniques. Though relevant across industries and the state, this research focuses on hydropower applications in the North Fork of the Feather River. Central components of the project are four wireless sensor networks, installed in locations that are representative of vegetation and topography patterns across the basin. The networks collect snow, temperature, relative humidity, soil moisture, and soil temperature data every 15 minutes. By blending this information with remote sensing data and historical maps, we estimate the spatial distribution of snow water resources at high resolution. These outputs can help improve runoff forecasting tools such as the Precipitation-Runoff Modeling System (PRMS). Preliminary results show that wireless sensor networks can successfully track hydrologic states and fluxes in real time and provide a more representative picture of snowpack accumulation and melt than traditional index stations. Network data are also used to gain insight into rain-on-snow events, which are a key streamflow generation mechanism for the Feather River. The data show that the current calibration of PRMS on the Feather River could overestimate snowfall and underestimate liquid precipitation. Future steps include a sensitivity analysis of PRMS to identify its dominant parameters and conceptual limitations, as well as a full, dynamic recalibration of the model. Blended maps of snow water equivalent will also be assimilated into the model. These results will be included in the decision-support suite for PG&E, California’s largest electric and natural gas utility, and an analysis will be performed to assess results’ economic value for stakeholders in the energy and water-supply sectors. 

Field Operations Manual for the Regional Monitoring Program (Version 1, Sediment)

San Francisco Estuary Institute (SFEI) | August 1st, 2018

This Field Operations Manual (FOM) of the Regional Monitoring Program (RMP) is intended as a reference document for each sampling effort. The FOM describes in detail how

This Field Operations Manual (FOM) of the Regional Monitoring Program (RMP) is intended as a reference document for each sampling effort. The FOM describes in detail how field staff should collect water, sediment, bivalve, bird egg, and sport fish samples for all RMP sampling efforts.  Sampling conducted by the RMP should also reference the QA Program Plan (QAPP) document, which describes the entire program, and is the repository for details about laboratories, analytical methods, MDLs, sample handling, sample preservation, and quality assurance procedures. The FOM is a companion document to the QAPP, and provides a more detailed description of sampling methods that are only outlined in Section 11 of the QAPP.  In addition, each individual sampling effort will have a unique Cruise Plan or Sampling and Analysis Plan (SAP). The SAP describes the details of each sampling effort, including dates, times, places, and staff, as well as the parameters that are being collected and analyzed. The SAP will reference this FOM for the detailed sampling methods. If different sampling methods are needed for a particular study, the SAP will describe deviations from the normal methods described in the FOM. 

Final Environmental Impact Report Volume II: Revised Draft EIR Comprehensive Groundwater Cleanup Strategy for Historical Chromium Discharges from PG&E’s Hinkley Compressor Station, San Bernardino County

California State Water Resources Control Board (SWRCB) | April 20th, 2013

Click here for Volume I.

Click here for Volume I.

Final Technical Report #1: Condition Assessment of Coastal Streams in Southern and Central California

California Department of Fish and Wildlife (CDFW) | July 1st, 2004

Historical assessments of stream condition have usually focused on describing the chemical quality of streams. As we have made progress in controlling chemical problems�

Historical assessments of stream condition have usually focused on describing the chemical quality of streams. As we have made progress in controlling chemical problems it has become obvious that the ultimate concern is actually the health of the plants and animals that inhabit these streams (EPA 2000). Streams in good ecological condition provide habitat for diverse aquatic communities, and provide clean drinking water and recreational opportunities for people. Biological organisms in a stream integrate the many chemical and physical stressors that act on the stream ecosystem, thus stream condition can be determined by assessing appropriate biological indicators, or combinations of these indicators, called indices. California’s Aquatic Bioassessment Lab recently developed a benthic index of biotic integrity (B-IBI) for the central and southern coasts of California (Ode et. al. in review). The index is based on benthic macroinvertebrate (BMI) samples collected from 275 sites in this region by the US Forest Service, US EPA and regional Water Quality Control Boards. The index defines the composition of BMI assemblages when human disturbance is absent or minimal (reference conditions), and because it is based on metrics that are responsive to key stressor gradients, it allows detection of potential ecological impairment when BMI samples from test sites are compared to reference conditions. Thus, the B-IBI provides a yardstick for measuring ecological conditions, and allows us to categorize site conditions as either “Good”, “Fair” or “Poor” based on BMI assemblages.

Flame retardants and plastic additives in San Francisco Bay: Targeted monitoring of organophosphate esters and bisphenols

San Francisco Estuary Institute (SFEI) | January 31st, 2020

Flood Runoff in Relation to Water Vapor Transport by Atmospheric Rivers Over the Western United States, 1949–2015

American Geophysical Union (AGU) | November 29th, 2017

Atmospheric rivers (ARs) have a significant role in generating floods across the western United States. We analyze daily streamflow for water years 1949 to 2015 from 5,

Atmospheric rivers (ARs) have a significant role in generating floods across the western United States. We analyze daily streamflow for water years 1949 to 2015 from 5,477 gages in relation to watervapor transport by ARs using a 6 h chronology resolved to 2.5° latitude and longitude. The probability that an AR will generate 50 mm/d of runoff in a river on the Pacific Coast increases from 12% when daily mean water vapor transport, DVT, is greater than 300 kg m
1s
1to 54% when DVT>600 kg m
1s
1. Extreme runoff, represented by the 99th quantile of daily values, doubles from 80 mm/d at DVT = 300 kg m
1s
1to160 mm/d at DVT = 500 kg m
1s
1. Forecasts and predictions of water vapor transport by atmospheric rivers can support flood risk assessment and estimates of future flood frequencies and magnitude in the western United States.