Identification of Bacteria in Groundwater Used for Domestic Supply in the Southeast San Joaquin Valley, California, 2014

U.S. Geological Survey (USGS) | June 22nd, 2021

Groundwater is an important source of drinking water in California. Water-borne diseases caused by microbial contamination are a growing concern. The MI test, a membrane

Groundwater is an important source of drinking water in California. Water-borne diseases caused by microbial contamination are a growing concern. The MI test, a membrane filtration method for the chromogenic / fluorogenic detection of total coliforms and Escherichia coli, was used for samples collected January to April 2014 from 42 domestic wells in the southeastern San Joaquin Valley. The wells were sampled as part of the Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP), a cooperative study between the U.S. Geological Survey and the California State Water Resources Control Board. Polymerase chain reaction analysis and sequencing of deoxyribonucleic acid (DNA) were used for 34 target and nontarget colonies that grew on the MI media from samples collected from 13 of the domestic wells to identify what genera of bacteria could exist in groundwater used by domestic wells. Gene sequences obtained using the Sanger method were entered into the basic local alignment search tool (BLAST) database, and 17 genera of bacteria were identified. Of these, 13 genera contain species that are human pathogens or opportunistic human pathogens. All the genera that include human pathogens are naturally present in soil, plants, or water; one of the pathogens also can be found in fecal matter. Six of the human pathogens were from non-target colony growth on the MI media. Target and non-target microbial growth on MI media are indicators of the possible presence of pathogenic bacteria even if the bacteria naturally are from soil rather than from a fecal source.

Identifying the location and population served by domestic wells in California

Journal of Hydrology: Regional Studies (Elsevier) | November 17th, 2014

Study region: California, USA. Study focus: Identification of groundwater use is an important stepin the regional-scale assessment of groundwater quality. In Califo

Study region: California, USA. Study focus: Identification of groundwater use is an important stepin the regional-scale assessment of groundwater quality. In California, 1990 US Census data indicate that domestic wells provide drinking-water to about 1.2 million people. However, the location of these domestic well users of groundwater is poorly identified because the census tracts can be quite large (up to 20,000 km2). The purposes of this paper are to present methods used for (1) estimating the location of domestic wells, (2) estimating the location of households using domes-tic well water; and (3) identifying where in California groundwater isan important source of domestic drinking supply.New hydrological insights for the region: Aggregating the results indicates that three hydrogeologic provinces contain nearly 80% of all domestic wells and also have the highest density of domestic well-users: Central Valley (31.6%), Sierra Nevada (31.5%), and NorthernCoast Ranges (16.6%). Results were also aggregated into groundwater basins and highland areas, collectively called Groundwater Units(GUs). Twenty-eight of the 938 GUs contain more than 50% of the total population served by domestic wells, 70 GUs contain more than 75%, and 150 GUs contain 90%. The 28 GUs are mostly located in the eastern and southern San Joaquin Valley (11), the Sacramento Valley (7), and the western foothills of the Sierra Nevada province (5). Using the information presented in this research along with other information about domestic-well use, the US Geological Survey has begun sampling high-use GUs for the Shallow Aquifer Assessment component of the Groundwater Ambient Assessment (GAMA) program.

Impact of extreme drought and incentive programs on flooded agriculture and wetlands in California’s Central Valley

PeerJ | June 29th, 2018

Between 2013 and 2015, a large part of the western United States, including the Central Valley of California, sustained an extreme drought. The Central Valley is recogniz

Between 2013 and 2015, a large part of the western United States, including the Central Valley of California, sustained an extreme drought. The Central Valley is recognized as a region of hemispheric importance for waterbirds, which use flooded agriculture and wetlands as habitat. Thus, the impact of drought on the distribution of surface water needed to be assessed to understand the effects on waterbird habitat availability.Methods: We used remote sensing data to quantify the impact of the recent extreme drought on the timing and extent of waterbird habitat during the non-breeding season (July–May) by examining open water in agriculture (rice, corn, and other crops) and managed wetlands across the Central Valley. We assessed the influence of habitat incentive programs, particularly The Nature Conservancy’s BirdReturns and The Natural Resources Conservation Service’s Waterbird Habitat Enhancement Program (WHEP), at offsetting habitat loss related to drought.Results: Overall, we found statistically significant declines in open water in post-harvest agriculture (45–80% declines) and in managed wetlands (39–60% declines) during the 2013–2015 drought compared to non-drought years during the period of 2000–2011. Crops associated with the San Joaquin Basin, specifically corn, as well as wetlands in that part of the Central Valley exhibited larger reductions in open water than rice and wetlands in the Sacramento Valley. Semi-permanent wetlands on protected lands had significantly lower (39–49%) open water in the drought years than those on non-protected lands while seasonal wetlands on protected lands had higher amounts of open water. A large fraction of the daily open water in rice during certain times of the year, particularly in the fall for BirdReturns (61%) and the winter for WHEP (100%), may have been provided through incentive programs which underscores the contribution of these programs. However, further assessment is needed to know how much the incentive programs directly offset the impact of drought in post-harvest rice by influencing water management or simply supplemented funding for activities that might have been done regardless. Discussion: Our landscape analysis documents the significant impacts of the recent extreme drought on freshwater wetland habitats in the Central Valley, the benefits of incentive programs, and the value of using satellite data to track surface water and waterbird habitats. More research is needed to understand subsequent impacts on the freshwater dependent species that rely on these systems and how incentive programs can most strategically support vulnerable species during future extreme drought.

Impacts of the California Drought from 2007 to 2009: Surprising Outcomes for California’s Agriculture, Energy, and Environment

Pacific Institute | June 16th, 2011

California’s three-year drought, which ended with this season’s cool and wet weather, had complicated and serious impacts that have been poorly understood and reporte

California’s three-year drought, which ended with this season’s cool and wet weather, had complicated and serious impacts that have been poorly understood and reported. Some of the impacts were expected; others were surprising. The Pacific Institute has just completed a nine-month assessment of new data from California’s agricultural, energy, and environmental sectors to evaluate actual consequences of the drought for the state. Analysis of state and federal data released over the past year finds that contrary to much of the media reporting, California’s agricultural community proved flexible and resilient, generating agri­cultural revenues in 2007, 2008, and 2009 that were the highest on record. And agriculture-related occupations remained a stable portion of total jobs available in areas directly impacted by water supply restrictions. Less frequently reported were the substantial impacts on energy production and aquatic ecosystems during the drought, which were economically and environmentally significant. “More severe drought is inevitable, and the U.S. – and California in particular – has not reformed drought monitoring, evaluation, planning, and response strategies the way other countries and regions have,” said Juliet Christian-Smith, senior research associate at the Pacific Institute and lead author of the report. “To become more resilient to future droughts, it will be critical to shift from crisis-driven responses to long-term mitigation strategies.” The Pacific Institute analysis, Impacts of the California Drought from 2007-2009, focused on three drought-sensitive sectors: agricultural production, energy production, and ecosystem health.  

Improved Imaging of the Large-Scale Structure of a Groundwater System with Airborne Electromagnetic Data

American Geophysical Union (AGU) | March 17th, 2022

A groundwater model is a representation of a groundwater system used to both understand the properties and processes of the subsurface, and to manage the groundwater reso

A groundwater model is a representation of a groundwater system used to both understand the properties and processes of the subsurface, and to manage the groundwater resource. An important step in developing a groundwater model is describing the large-scale structure, the "plumbing system" that controls the groundwater flow. Given the size of many groundwater models, obtaining an accurate description of the large-scale structure can be a challenging task. The traditional approach has involved the drilling of wells. While wells can provide accurate information at the location of the wells, the spatial sampling of the subsurface that can be accomplished through the drilling of wells is limited. An airborne electromagnetic (AEM) method provides an alternative by using a geophysical measurement to map out the electrical resistivity to depths of hundreds of meters. Working with AEM data acquired in the Kaweah Subbasin in the Central Valley of California, we were able to image the large-scale structure - the bedrock surface and a thick clay layer. The key improvement was made by incorporating prior knowledge into the inversion of the data. Once we had obtained the large-scale structure, we found that this could be used to improve the imaging of the smaller-scale structure.

Incomplete Determination of the 2020 Eastern San Joaquin Subbasin Groundwater Sustainability Plan

California Department of Water Resources (DWR) | January 28th, 2022

The Department of Water Resources (Department) has evaluated the groundwater sustainability plan (GSP) submitted for the Eastern San Joaquin Subbasin (Subbasin) and has d

The Department of Water Resources (Department) has evaluated the groundwater sustainability plan (GSP) submitted for the Eastern San Joaquin Subbasin (Subbasin) and has determined that the GSP is incomplete. The Department based its determination on recommendations from the Staff Report, included as an enclosure to the attached Statement of Findings, which describes that the Eastern San Joaquin Subbasin GSP does not satisfy the objectives of the Sustainable Groundwater Management Act (SGMA) nor substantially comply with the GSP Regulations. The Staff Report also provides corrective actions which the Department recommends to address the identified deficiencies.

Incomplete Determination of the 2020 Groundwater Sustainability Plans Submitted for the San Joaquin Valley – Kern County Subbasin

California Department of Water Resources (DWR) | January 28th, 2022

Department management has reviewed the enclosed Staff Report, which recommends that the deficiencies identified should preclude approval of the Plan. Based on its review

Department management has reviewed the enclosed Staff Report, which recommends that the deficiencies identified should preclude approval of the Plan. Based on its review of the Staff Report, Department management is satisfied that staff have conducted a thorough evaluation and assessment of the Plan and concurs with, and hereby adopts, staff’s recommendation and all the corrective actions provided. The Department thus deems the Plan incomplete based on the Staff Report and the findings contained herein. A. The GSPs do not establish undesirable results that are consistent for the entire Subbasin. 1. While the Coordination Agreement presents Subbasin-wide undesirable results, the Subbasin’s fragmented approach towards establishing management criteria that define undesirable conditions in various parts of the Subbasin does not satisfy SGMA’s requirement to use same data and methodologies. B. The Subbasin’s chronic lowering of groundwater levels sustainable management criteria do not satisfy the requirements of SGMA and the GSP Regulations. 1. The GSPs relied on disparate methods to develop groundwater level minimum thresholds across the numerous GSPs and management areas. 2. The GSPs do not consistently and sufficiently document the effects of their selected minimum thresholds on beneficial uses and users in the Subbasin, nor explain how the minimum thresholds and measurable objectives that are set below historical lows will impact other applicable sustainability indicators, specifically water quality, land subsidence, and reduction of groundwater storage. C. The Subbasin’s land subsidence sustainable management criteria do not satisfy the requirements of SGMA and the GSP Regulations. 1. The Plan lacks a Subbasin-wide, coordinated approach to establishing land subsidence sustainable management criteria. 2. The GSPs and management areas that use their minimum thresholds for the chronic lowering of groundwater levels as proxy criteria for subsidence do not sufficiently demonstrate that groundwater levels (specifically groundwater levels below historical lows) are a reasonable proxy to avoid land subsidence that would substantially interfere with surface land uses.

Influence of agricultural managed aquifer recharge on nitrate transport: The role of soil texture and flooding frequency

Soil Science Society of America (SSSA) | June 9th, 2021

Agricultural managed aquifer recharge (Ag-MAR) is a concept in which farmland is flooded during the winter using excess surface water to recharge the underlying groundwat

Agricultural managed aquifer recharge (Ag-MAR) is a concept in which farmland is flooded during the winter using excess surface water to recharge the underlying groundwater. In this study, we show how different recharge practices affect NO3− leaching and mineralization–denitrification processes in different soil systems. Two contrasting soil textures (sand and fine sandy loam) from the Central Valley, Califor- nia, were repeatedly flooded with 15 cm of water at varying time intervals in field and soil column experiments. Nitrogen species (NO3–, NH4+, total N), total C, dis- solved O2, and moisture content were measured throughout the experiments. Results show that when flooding occurs at longer intervals (every 1–2 wk), N mineralization increases, leading to an increase of mobile NO3− in the upper root zone and leach- ing of significant quantities of NO3− from both soil textures (137.3 ± 6.6% [sand] and 145.7 ± 5.8% [fine sandy loam] of initial residual soil NO3−) during subsequent flooding events. Laboratory mineralization incubations show that long flooding inter- vals promote mineralization and production of excess NO3− at rates of 0.11–3.93 mg N kg–1 wk–1 (sand) and 0.08–3.41 mg N kg–1 wk–1 (fine sandy loam). Decreasing the flooding frequency to 72 h reduces potential mineralization, decreasing the amount of NO3− leached during flooding events (31.7 ± 3.8% [sand] and 64.7 ± 10.4% [fine sandy loam] of initial residual soil NO3–). The results indicate that implementing recharge as repeated events over a long (multiple-week) time horizon might increase the total amount of NO3− potentially available for leaching to groundwater.

Information for the Future: The West Side San Joaquin Valley Project

West Side San Joaquin Valley Coordinating Council, University of California, Water Resources Center | September 1st, 1970

Integrated simulation of consumptive use and land subsidence in the Central Valley, California, for the past and for a future subject to urbanization and climate change

U.S. Geological Survey (USGS) | October 17th, 2010

Competition for water resources is growing throughout California, particularly in the Central Valley where about 20% of all groundwater used in the United States of Ameri

Competition for water resources is growing throughout California, particularly in the Central Valley where about 20% of all groundwater used in the United States of America is consumed for agriculture and urban water supply. Continued agricultural use coupled with urban growth and potential climate change would result in continued depletion of groundwater storage and associated land subsidence throughout the Central Valley. For 1962–2003, an estimated 1230 hectametres (hm3) of water was withdrawn from fine-grained beds, resulting in more than three metres (m) of additional land subsidence locally. Linked physically-based, supply-constrained and demand-driven hydrological models were used to simulate future hydrologic conditions under the A2 climate projection scenario that assumes continued “business as usual” greenhouse gas emissions. Results indicate an increased subsidence in the second half of the twenty-first century. Potential simulated land subsidence extends into urban areas and the eastern side of the valley where future surface-water deliveries may be depleted.