Independent Panel Review of the Bay Delta Conservation Plan prepared for The Nature Conservancy and American Rivers

Nature Conservancy | September 19th, 2013

Two non-­governmental organizations, The Nature Conservancy (TNC) and American Rivers (AR), are evaluating their options for engagement with the Bay Delta Conservation P

Two non-­governmental organizations, The Nature Conservancy (TNC) and American Rivers (AR), are evaluating their options for engagement with the Bay Delta Conservation Plan (BDCP). If approved, the Plan would become a Habitat Conservation Plan (HCP) under the federal Endangered Species Act and a Natural Communities Conservation Plan (NCCP) under California law. The purpose of the Plan is to allow for construction of new water diversion facilities in the Sacramento-­San Joaquin Delta while also protecting aquatic and terrestrial species that may be adversely affected by the project and accompanying changes in the State Water Project (SWP) and Central Valley Project (CVP) operations. The Plan also includes habitat restoration and a commitment to assist in the conservation and recovery of species that are listed for protection under the federal and state Endangered Species Acts. With financial support from the S.D. Bechtel, Jr. Foundation, Saracino and Mount, LLC, convened an independent panel of experts, with technical support from NewFields, Inc., to evaluate portions of the Plan. The panel, working jointly with TNC and AR, developed a series of technical and legal questions about the Plan. This report provides answers to these questions, along with limited recommendations on how to improve BDCP. To simplify analysis, this review focuses on conditions for federally listed fishes during the Early Long Term (ELT), a decade after a permit would be issued (approximately year 2025). These are described in detail in the BDCP Effects Analysis and accompanying Environmental Impact Statement/Environmental Impact Report. We compared the performance of three different scenarios: a No Action Alternative (NAA) where no new North Delta diversion facility is constructed, a High Outflow Scenario (HOS) where the facilities are operated in a way that allows for occasional high spring and fall outflows, and a Low Outflow Scenario (LOS) with lower spring and fall outflows. The review also emphasizes in-­Delta and Sacramento River watershed conditions during the ELT, with less attention to San Joaquin River conditions and fishes. Although multiple data sources were used in this analysis, most hydrologic data came from CALSIM simulations conducted by BDCP consultants. The Panel strongly cautions about the conclusions drawn from these simulations. Flow simulations have three compounding uncertainties that can lead to significant error: (1) uncertainty in system understanding and future conditions, (2) model uncertainties (particularly the relationships between 1-­, 2-­, and 3-­dimensional models), and (3) behavioral/regulatory uncertainty where the models cannot capture the scope of human behavior in operating the projects under various conditions. These uncertainties, which are not described in BDCP documents well, makes all of our conclusions contingent on the projects actually being operated as simulated.

Independent Review Panel (IRP) Report for the 2014 Long-Term Operations Biological Opinions (LOBO) Annual Science Review

Delta Stewardship Council (Delta Council) | December 1st, 2014

Independent Review Panel (IRP) Report for the 2015 Long-Term Operations Biological Opinions (LOBO) Annual Science Review

Delta Stewardship Council (Delta Council) | December 1st, 2015

This report presents findings and opinions of the Independent Review Panel (IRP) assembled by the Delta Science Program to inform the National Marine Fisheries Service (N

This report presents findings and opinions of the Independent Review Panel (IRP) assembled by the Delta Science Program to inform the National Marine Fisheries Service (NMFS) and the U.S. Fish & Wildlife Service (USFWS) as to the efficacy of water operations and certain regulatory actions prescribed by their respective Long-term Operations Biological Opinions’ (LOBO) Reasonable and Prudent Alternative Actions (RPAs) as applied from October 1, 2014 through September 30, 2015 (Water Year 2015).  This year’s annual review focused primarily on: (1) Shasta Reservoir and Sacramento River temperature monitoring, modeling, and management, (2) the River Assessment for Forecasting Temperature (RAFT) decision support tool (model), (3) an Enhanced Particle Tracking Model (E-PTM), and (4) a USFWS report on past, present, and future approaches to incidental take of Delta Smelt.  After reviewing a required set of written documents (Appendix 1), the IRP convened at a public workshop in Sacramento, CA on 5-6 November 2015. The first day of the 2-day workshop included agency presentations and provided a forum for the IRP to interact and consider information presented on water operations, temperature modeling, monitoring and RPA Actions as implemented in yet another critically dry 2015 water year. On the second day, the IRP deliberated in a private session beginning at 9:00 a.m. in order to prepare and present their initial findings at the public workshop at 2:00 p.m., after which there was an opportunity for agency representatives, members of the public, and the IRP members to comment and otherwise exchange impressions and information. Subsequent IRP communication and deliberations were conducted via email and conference calls in the course of drafting this final report. Click here for federal agency response letter

Independent Review Panel (IRP) Report for the 2017 Long-term Operations Biological Opinions (LOBO) Biennial Science Review (January 24, 2018)

Delta Stewardship Council (Delta Council) | January 31st, 2018

Initial Alternatives Information Report for the North/Central Delta Improvement Study (Delta Cross Channel, Franks Tract, and Through- Delta Facility Evaluation)

U.S. Bureau of Reclamation (USBR) | March 17th, 2010

The U.S. Department of the Interior (Interior) Bureau of Reclamation (Reclamation) and the California Department of Water Resources (DWR) are evaluating the feasibility o

The U.S. Department of the Interior (Interior) Bureau of Reclamation (Reclamation) and the California Department of Water Resources (DWR) are evaluating the feasibility of using conveyance and operations actions in the north and central region of the Sacramento–San Joaquin River Delta (Delta) to improve water quality and fish conditions. Specifically, Reclamation is evaluating the feasibility of these actions in the North/Central Delta Improvement Study (NoCDIS or Study). The Initial Alternatives Information Report (IAIR) identifies, discusses, and screens measures to address the problems and opportunities. These measures are used to develop initial alternatives. Initial alternatives from the IAIR will be incorporated into and refined in the subsequent Plan Formulation Report (PFR). Subject to continued appropriations and a determination of federal interest, the Study should culminate in an Environmental Impact Statement/Environmental Impact Report (EIS/EIR) and a Feasibility Report. Reclamation is the federal lead agency for National Environmental Policy Act (NEPA) compliance, and DWR is the state lead agency for California Environmental Quality Act (CEQA) compliance.

Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity

Conservation Physiology (Society of Experimental Biology) | December 10th, 2020

The Sacramento splittail (Pogonichthys macrolepidotus) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allop

The Sacramento splittail (Pogonichthys macrolepidotus) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allopatric upstream spawning habitat of the Central Valley (CV) population connects with the sympatric rearing grounds via relatively low salinity waters, whereas the San Pablo (SP) population must pass through the relatively high-salinity Upper SFE to reach its allopatric downstream spawning habitat. We hypothesize that if migration through SFE salinities to SP spawning grounds is more challenging for adult CV than SP splittail, then salinity tolerance, osmoregulatory capacity, and metabolic responses to salinity will differ between populations. Osmoregulatory disturbances, assessed by measuring plasma osmolality and ions, muscle moisture and Na+-K+-ATPase activity after 168 to 336 h at 11 salinity, showed evidence for a more robust osmoregulatory capacity in adult SP relative to CV splittail. While both resting and maximum metabolic rates were elevated in SP splittail in response to increased salinity, CV splittail metabolic rates were unaffected by salinity. Further, the calculated difference between resting and maximum metabolic values, aerobic scope, did not differ significantly between populations. Therefore, improved osmoregulation came at a metabolic cost for SP splittail but was not associated with negative impacts on scope for aerobic metabolism. These results suggest that SP splittail may be physiologically adjusted to allow for migration through higher-salinity waters. The trends in interpopulation variation in osmoregulatory and metabolic responses to salinity exposures support our hypothesis of greater salinity-related challenges to adult CV than SP splittail migration and are consistent with our previous findings for juvenile splittail populations, further supporting our recommendation of population-specific management.

Interagency Fish Passage Steering Committee 2014 Annual Report Focusing on the Shasta Dam Fish Passage Evaluation

Delta Stewardship Council (Delta Council) | July 1st, 2014

Interim instream flow criteria for the protection of fishery resources in the Scott River watershed, Siskiyou County

California Department of Fish and Wildlife (CDFW) | February 6th, 2017

This document describes the methods and results of an analysis using historical flow data and regional regression relationships to develop interim instream flow criteria

This document describes the methods and results of an analysis using historical flow data and regional regression relationships to develop interim instream flow criteria suitable for anadromous fish in the Scott River watershed in Siskiyou County. The Scott River watershed provides aquatic habitat for four species of anadromous fish; Chinook Salmon (Oncorhynchus tshawytscha), Coho Salmon (O. kisutch), steelhead trout (O. mykiss), and Pacific Lamprey (Lampetra tridentata). Specifically, the Scott River is one of the most important Coho Salmon spawning and rearing tributaries in the Klamath River watershed. Instream flow requirements can be generated from flow standard setting techniques or from the results of site specific studies. The interim instream flow criteria presented for the Scott River were developed using flow standard setting techniques. Stream flow standards derived from standard setting techniques are designed to identify the environmental resource in need of flow protection, identify biologically significant criterion that can be used to measure potential flow related impacts, and specify the amount of flow required to protect the resource. Most individual standards evaluate only one or more, but not all the criterion needed to fully evaluate the flow needs of an aquatic species. This limitation can lead to prescribing a single minimum threshold or “flat-line” affect (Poff et al. 1997). The seasonal and inter-annual variability in the hydrograph must be maintained to protect stream ecology and provide an ecosystem based standard (Annear 2004). To account for the seasonal and the inter-annual hydrologic variability of the Scott River, the Department applied a detailed hydrologic analysis along with application of three standard setting methods to evaluate the life history flow needs of salmonids in the Scott River near Fort Jones. Adult fish passage was estimated using the equation developed by R2 Resources (R2 2008) for the State Water Resources Control Board’s (SWRCB) North Coast Instream Flow Policy (SWRCB 2014), spawning and juvenile rearing were evaluated using the Hatfield and Bruce regional equations (Hatfield and Bruce 2000), and the results were adjusted monthly based on estimates of unimpaired hydrology using Tessmann’s adaptation (Tessmann 1980) of the Tennant or Montana Method (Tennant 1975).

Issue Paper for the San Joaquin River spring-run Chinook experimental population – Delta impacts

National Marine Fisheries Service (NMFS) | July 23rd, 2013

Juvenile Production Estimate (JPE) Calculation and Use/Application of Survival Data from Acoustically-tagged Chinook Salmon Releases Report

Delta Stewardship Council (Delta Council) | February 21st, 2014

Each year, NOAA’s National Marine Fisheries Service (NMFS) estimates the number of juvenile winter-run Chinook salmon expected to enter the Delta. NMFS’ June 4, 2009

Each year, NOAA’s National Marine Fisheries Service (NMFS) estimates the number of juvenile winter-run Chinook salmon expected to enter the Delta. NMFS’ June 4, 2009, biological and conference opinion on the long-term operation of the Central Valley Project and State Water Project provides an incidental take limit on natural juvenile winter-run based on the juvenile production estimate.