Simplified 1-D Hydrodynamic and Salinity Transport Modeling of the Sacramento–San Joaquin Delta: Sea Level Rise and Water Diversion Effects

University of California, Davis (UC Davis) | December 11th, 2013

Simulated Effects of Ground-Water Management Alternatives for the Salinas Valley, California

U.S. Geological Survey (USGS) | December 15th, 1988

A two-dimensional digital ground-water flow model was developed to analyze the geohydrology of the ground-water basin in the Salinas Valley. The ground-water model was ca

A two-dimensional digital ground-water flow model was developed to analyze the geohydrology of the ground-water basin in the Salinas Valley. The ground-water model was calibrated for steady-state and transient simulations by comparing simulated with measured or estimated inflows, outflows, and water levels for 1970-81. Preliminary estimates of hydraulic properties and some inflows and outflows were adjusted during model calibration. The simulated mean annual water budget for the basin was 559,500 acre-feet per year each of outflow and inflow. Inflow components consisted of Salinas River recharge (38.3 percent), percolation of irrigation water (34.0 percent), small stream and Arroyo Seco recharge (20.9 percent), seawater intrusion (3.4 percent), and other sources (3.4 percent). Outflow components consisted of agricultural pumpage (91.5 percent), municipal pumpage (4.0 percent), and riparian phreatophyte evapotranspiration (4.5 percent). For the steady-state calibration, 70 percent of the simulated water levels were within 9 feet of measured water levels for 1970-81. A sensitivity analysis determined the overall stability of the model results. The model input variable that probably contributes most to the uncertainty of the results is the quantity of ground-water recharge contributed by irrigation return flow to the unconfined aquifer. A 15-percent change in the estimate of this variable causes an 11-percent change in the simulated river-seepage rate and a 6-percent change in the simulated seawater-intrusion rate. The calibrated model was used to investigate several water-resources management alternatives. Projected pumpage increase at a rate of 1 percent per year for 20 years caused declines in mean annual water levels of 10 to 20 feet in some areas and an increase in seawater intrusion from 18,900 to 23,600 acre-feet per year. Pumpage decreases in the coastal area decreased seawater intrusion more effectively than pumpage decreases farther inland. When pumpage was decreased near the coast, seawater intrusion decreased oneseventh as much. When pumpage was decreased uniformly throughout the valley, the decrease in seawater intrusion was only one-fourteenth the decrease in pumpage. Simulations indicated that replacement of ground-water pumpage with imported surface water in a 9,000-acre service area near the coast would result in a decrease in seawater intrusion equaling nearly onehalf the quantity of imported water. This further confirmed that the rate of seawater intrusion is most sensitive to pumpage near the coast.

Simulation of Ground-Water / Surface-Water Flow in the Santa Clara–Calleguas Ground-Water Basin, Ventura County, California

U.S. Geological Survey (USGS) | July 17th, 2003

Ground water is the main source of water in the Santa Clara–Calleguas ground-water basin that covers about 310 square miles in Ventura County, California. A steady incr

Ground water is the main source of water in the Santa Clara–Calleguas ground-water basin that covers about 310 square miles in Ventura County, California. A steady increase in the demand for surface- and ground-water resources since the late 1800s has resulted in streamflow depletion and ground-water overdraft. This steady increase in water use has resulted in seawater intrusion, inter-aquifer flow, land subsidence, and ground-water contamination.  The Santa Clara–Calleguas Basin consists of multiple aquifers that are grouped into upper- and lower-aquifer systems. The upper-aquifer system includes the Shallow, Oxnard, and Mugu aquifers. The lower-aquifer system includes the upper and lower Hueneme, Fox Canyon, and Grimes Canyon aquifers. The layered aquifer systems are each bounded below by regional unconformities that are overlain by extensive basal coarse-grained layers that are the major pathways for ground-water production from wells and related seawater intrusion. The aquifer systems are bounded below and along mountain fronts by consolidated bedrock that forms a relatively impermeable boundary to ground-water flow. Numerous faults act as additional exterior and interior boundaries to ground-water flow. The aquifer systems extend offshore where they crop out along the edge of the submarine shelf and within the coastal submarine canyons. Submarine canyons have dissected these regional aquifers, providing a hydraulic connection to the ocean through the submarine outcrops of the aquifer systems. Coastal landward flow (seawater intrusion) occurs within both the upper- and lower-aquifer systems. A numerical ground-water flow model of the Santa Clara–Calleguas Basin was developed by the U.S. Geological Survey to better define the geohydrologic framework of the regional ground-water flow system and to help analyze the major problems affecting water-resources management of a typical coastal aquifer system. Construction of the Santa Clara–Calleguas Basin model required the compilation of geographic, geologic, and hydrologic data and estimation of hydraulic properties and flows. The model was calibrated to historical surface-water and ground-water flow for the period 1891–1993. Sources of water to the regional ground-water flow system are natural and artificial recharge, coastal landward flow from the ocean (seawater intrusion), storage in the coarse-grained beds, and water from compaction of fine-grained beds (aquitards). Inflows used in the regional flow model simulation include streamflows routed through the major rivers and tributaries; infiltration of mountain-front runoff and infiltration of precipitation on bedrock outcrops and on valley floors; and artificial ground-water recharge of diverted streamflow, irrigation return flow, and treated sewage effluent.  Most natural recharge occurs through infiltration (losses) of streamflow within the major rivers and tributaries and the numerous arroyos that drain the mountain fronts of the basin. Total simulated natural recharge was about 114,100 acre-feet per year (acre-ft/yr) for 1984–93: 27,800 acre-ft/yr of mountain-front and bedrock recharge, 24,100 acre-ft/yr of valley-floor recharge, and 62,200 acre-ft/yr of net streamflow recharge. Artificial recharge (spreading of diverted streamflow, irrigation return, and sewage effluent) is a major source of ground-water replenishment. During the 1984–93 simulation period, the average rate of artificial recharge at the spreading grounds was about 54,400 acre-ft/yr, 13 percent less than the simulated natural recharge rate for streamflow infiltration within the major rivers and tributaries. Estimated recharge from infiltration of irrigation return flow on the valley floors averaged about 51,000 acre-ft/yr, and treated sewage effluent averaged about 9,000 acre-ft/yr. Artificial recharge as streamflow diversion to the spreading grounds has occurred since 1929, and treated-sewage effluent has been discharged to stream channels since 1930.  Under predevelopment conditions, the largest discharge from the ground-water system was outflow as coastal seaward flow and evapotranspiration. Pumpage of ground water from thousands of water-supply wells has diminished these outflows and is now the largest outflow from the ground-water flow system. The distribution of pumpage for 1984–93 indicates that most of the pumpage occurs in the Oxnard Plain subareas (37 percent) and in the upper Santa Clara River Valley subareas (37 percent). The total average simulated pumpage was about 247,000 acre-ft/yr (59 percent); of which about 146,000 acre-ft/yr was from the Fox Canyon Groundwater Management Agency (FGMA) subareas and 101,000 acre-ft/yr (41 percent) from the non-FGMA subareas. Of the total 1984–93 pumpage, 46 percent was contributed by natural recharge, 22 percent was contributed by artificial recharge from diverted streamflow, 20 percent was contributed by irrigation return flow, 4 percent was contributed from sewage-effluent infiltration, 6 percent was contributed from storage depletion, and 2 percent was contributed from coastal landward flow (seawater intrusion). Seawater intrusion was first suspected in 1931 when water levels were below sea level in a large part of the Oxnard Plain. The simulation of regional ground-water flow indicated that coastal landward flow (seawater intrusion) began in 1927 and continued to the end of the period of simulation (1993). During wet periods or periods of reduced demand for ground water, the direction of coastal flow in the upper-aquifer system reverses from landward to seaward. During the 1984–93 period, the simulated total net seaward flow was 9,500 acre-feet in the upper-aquifer system, which is considerably less than that simulated for predevelopment conditions. During the same period, total simulated landward flow in the lower-aquifer system was 64,200 acre-feet. Water-level declines in the basin have induced land subsidence that was first measured in 1939 and have resulted in as much as 2.7 feet land subsidence in the southern part of the Oxnard Plain. The model simulated a total of 3 feet of land subsidence in the southern part of the Oxnard Plain and as much as 5 feet in the Las Posas Valley subbasins. Model simulations indicate that most of the land subsidence occurred after the drought of the late 1920s and during the agricultural expansion of the 1950s and 1960s. The results also indicate that subsidence occurred primarily in the upper-aquifer system prior to 1959, but in the lower-aquifer system between 1959–93 owing to an increase in pumpage from the lower-aquifer system. The calibrated ground-water flow model was used to assess future ground-water conditions based on proposed water-supply projects in the existing management plan for the Santa Clara–Calleguas ground-water basin. All the projections of the proposed water-supply projects in the existing management plan have reduced pumpage in the FGMA areas which resulted in a reduction but not an elimination of storage depletion and related coastal landward flow (seawater intrusion) and subsidence, a reduction in streamflow recharge, and an increase in coastal seaward flow and underflow to adjacent subareas from the Oxnard Plain. A comparison of management simulations based on historical inflows and a spectral estimate of inflows shows increased coastal landward flow (seawater intrusion), storage depletion, and increased land subsidence due to a drought projected earlier in the spectral estimate of inflows than in the historical inflows. The spectral estimate probably provides a smoother and more realistic transition between historical and future climatic conditions. The model also was used to simulate potential alternative water-supply projects in the Santa Clara–Calleguas ground-water basin. These seven alternative water-supply projects were proposed to help manage the effects of increasing demand and variable supply on seawater intrusion, subsidence, increased withdrawal from storage, and vertical and lateral flow between subareas and aquifers systems. Stopping pumpage primarily in the lower-aquifer system in the South Oxnard Plain subarea had the largest effect on reducing coastal landward flow (seawater intrusion) of all the potential cases evaluated. Shifting pumpage from the lower- to the upper-aquifer system in the South Oxnard Plain subarea yielded the largest combined effect on coastal flow with a reduction of coastal landward flow in the lower-aquifer system and coastal seaward flow from the upper-aquifer system. A seawater-barrier injection project stopped coastal landward flow (seawater intrusion) in the upper-aquifer system but also resulted in large quantities of coastal seaward flow. The recharge of water in Happy Camp Canyon resulted in water-level rises that were above land surface (not feasible) in the East Las Posas Valley subarea but in no significant changes in hydrologic conditions in other parts of the basin. 

Simulation of Ground-Water/Surface-Water Flow in the Santa Clara–Calleguas Ground-Water Basin, Ventura County, California

U.S. Geological Survey (USGS) | July 15th, 2003

Ground-water is the main source of water in the Santa Clara–Calleguas ground-water basin that covers about 310 square miles in Ventura County, California. A steady incr

Ground-water is the main source of water in the Santa Clara–Calleguas ground-water basin that covers about 310 square miles in Ventura County, California. A steady increase in the demand for surface- and ground-water resources since the late 1800s has resulted in streamflow depletion and ground-water overdraft. This steady increase in water use has resulted in seawater intrusion, inter-aquifer flow, land subsidence, and ground-water contamination. 

Simulation of ground-water/surface-water fow in the Santa Clara-Calleguas ground-water basin, Ventura County, California

U.S. Geological Survey (USGS) | July 17th, 2003

Groundwater is the main source of water in the Santa Clara–Calleguas ground-water basin that covers about 310 square miles in Ventura County, California. A steady incre

Groundwater is the main source of water in the Santa Clara–Calleguas ground-water basin that covers about 310 square miles in Ventura County, California. A steady increase in the demand for surface- and ground-water resources since the late 1800s has resulted in streamflow depletion and ground-water overdraft. This steady increase in water use has resulted in seawater intrusion, inter-aquifer flow, land subsidence, and ground-water contamination. The Santa Clara–Calleguas Basin consists of multiple aquifers that are grouped into upper- and lower-aquifer systems. The upper-aquifer system includes the Shallow, Oxnard, and Mugu aquifers. The lower-aquifer system includes the upper and lower Hueneme, Fox Canyon, and Grimes Canyon aquifers. The layered aquifer systems are each bounded below by regional unconformities that are overlain by extensive basal coarse-grained layers that are the major pathways for ground-water production from wells and related seawater intrusion. The aquifer systems are bounded below and along mountain fronts by consolidated bedrock that forms a relatively impermeable boundary to ground-water flow. Numerous faults act as additional exterior and interior boundaries to ground-water flow. The aquifer systems extend offshore where they crop out along the edge of the submarine shelf and within the coastal submarine canyons. Submarine canyons have dissected these regional aquifers, providing a hydraulic connection to the ocean through the submarine outcrops of the aquifer systems. Coastal landward flow (seawater intrusion) occurs within both the upper- and lower-aquifer systems. A numerical ground-water flow model of the Santa Clara–Calleguas Basin was developed by the U.S. Geological Survey to better define the geohydrologic framework of the regional ground-water flow system and to help analyze the major problems affecting water-resources management of a typical coastal aquifer system. Construction of the Santa Clara–Calleguas Basin model required the compilation of geographic, geologic, and hydrologic data and estimation of hydraulic properties and flows. The model was calibrated to historical surface-water and ground-water flow for the period 1891–1993. Sources of water to the regional ground-water flow system are natural and artificial recharge, coastal landward flow from the ocean (seawater intrusion), storage in the coarse-grained beds, and water from compaction of fine-grained beds (aquitards). Inflows used in the regional flow model simulation include streamflows routed through the major rivers and tributaries; infiltration of mountain-front runoff and infiltration of precipitation on bedrock outcrops and on valley floors; and artificial ground-water recharge of diverted streamflow, irrigation return flow, and treated sewage effluent. Most natural recharge occurs through infiltration (losses) of streamflow within the major rivers and tributaries and the numerous arroyos that drain the mountain fronts of the basin. Total simulated natural recharge was about 114,100 acre-feet per year (acre-ft/yr) for 1984–93: 27,800 acre-ft/yr of mountain-front and bedrock recharge, 24,100 acre-ft/yr of valley-floor recharge, and 62,200 acre-ft/yr of net streamflow recharge. Artificial recharge (spreading of diverted streamflow, irrigation return, and sewage effluent) is a major source of ground-water replenishment. During the 1984–93 simulation period, the average rate of artificial recharge at the spreading grounds was about 54,400 acre-ft/yr, 13 percent less than the simulated natural recharge rate for streamflow infiltration within the major rivers and tributaries. Estimated recharge from infiltration of irrigation return flow on the valley floors averaged about 51,000 acre-ft/yr, and treated sewage effluent averaged about 9,000 acre-ft/yr. Artificial recharge as streamflow diversion to the spreading grounds has occurred since 1929, and treated-sewage effluent has been discharged to stream channels since 1930. Under predevelopment conditions, the largest discharge from the ground-water system was outflow as coastal seaward flow and evapotranspiration. Pumpage of ground water from thousands of water-supply wells has diminished these outflows and is now the largest outflow from the ground-water flow system. The distribution of pumpage for 1984–93 indicates that most of the pumpage occurs in the Oxnard Plain subareas (37 percent) and in the upper Santa Clara River Valley subareas (37 percent). The total average simulated pumpage was about 247,000 acre-ft/yr (59 percent); of which about 146,000 acre-ft/yr was from the Fox Canyon Groundwater Management Agency (FGMA) subareas and 101,000 acre-ft/yr (41 percent) from the non-FGMA subareas. Of the total 1984–93 pumpage, 46 percent was contributed by natural recharge, 22 percent was contributed by artificial recharge from diverted streamflow, 20 percent was contributed by irrigation return flow, 4 percent was contributed from sewage-effluent infiltration, 6 percent was contributed from storage depletion, and 2 percent was contributed from coastal landward flow (seawater intrusion). Seawater intrusion was first suspected in 1931 when water levels were below sea level in a large part of the Oxnard Plain. The simulation of regional ground-water flow indicated that coastal landward flow (seawater intrusion) began in 1927 and continued to the end of the period of simulation (1993). During wet periods or periods of reduced demand for ground water, the direction of coastal flow in the upper-aquifer system reverses from landward to seaward. During the 1984–93 period, the simulated total net seaward flow was 9,500 acre-feet in the upper-aquifer system, which is considerably less than that simulated for predevelopment conditions. During the same period, total simulated landward flow in the lower-aquifer system was 64,200 acre-feet. Water-level declines in the basin have induced land subsidence that was first measured in 1939 and have resulted in as much as 2.7 feet land subsidence in the southern part of the Oxnard Plain. The model simulated a total of 3 feet of land subsidence in the southern part of the Oxnard Plain and as much as 5 feet in the Las Posas Valley subbasins. Model simulations indicate that most of the land subsidence occurred after the drought of the late 1920s and during the agricultural expansion of the 1950s and 1960s. The results also indicate that subsidence occurred primarily in the upper-aquifer system prior to 1959, but in the lower-aquifer system between 1959–93 owing to an increase in pumpage from the lower-aquifer system. The calibrated ground-water flow model was used to assess future ground-water conditions based on proposed water-supply projects in the existing management plan for the Santa Clara–Calleguas ground-water basin. All the projections of the proposed water-supply projects in the existing management plan have reduced pumpage in the FGMA areas which resulted in a reduction but not an elimination of storage depletion and related coastal landward flow (seawater intrusion) and subsidence, a reduction in streamflow recharge, and an increase in coastal seaward flow and underflow to adjacent subareas from the Oxnard Plain. A comparison of management simulations based on historical inflows and a spectral estimate of inflows shows increased coastal landward flow (seawater intrusion), storage depletion, and increased land subsidence due to a drought projected earlier in the spectral estimate of inflows than in the historical inflows. The spectral estimate probably provides a smoother and more realistic transition between historical and future climatic conditions. The model also was used to simulate potential alternative water-supply projects in the Santa Clara–Calleguas ground-water basin. These seven alternative water-supply projects were proposed to help manage the effects of increasing demand and variable supply on seawater intrusion, subsidence, increased withdrawal from storage, and vertical and lateral flow between subareas and aquifers systems. Stopping pumpage primarily in the lower-aquifer system in the South Oxnard Plain subarea had the largest effect on reducing coastal landward flow (seawater intrusion) of all the potential cases evaluated. Shifting pumpage from the lower- to the upper-aquifer system in the South Oxnard Plain subarea yielded the largest combined effect on coastal flow with a reduction of coastal landward flow in the lower-aquifer system and coastal seaward flow from the upper-aquifer system. A seawater-barrier injection project stopped coastal landward flow (seawater intrusion) in the upper-aquifer system but also resulted in large quantities of coastal seaward flow. The recharge of water in Happy Camp Canyon resulted in water-level rises that were above land surface (not feasible) in the East Las Posas Valley subarea but in no significant changes in hydrologic conditions in other parts of the basin.

Simulations of Ground-Water Flow and Particle Pathline Analysis in the Zone of Contribution of a Public-Supply Well in Modesto, Eastern San Joaquin Valley, California

U.S. Geological Survey (USGS) | July 1st, 2008

Skarry Removal

California State Lands Commission (SLC) | May 1st, 2025

The Commission’s contractor will remove booms, winches, and other superstructures from the crane barges on site. This equipment will be cut into pieces and placed on a

The Commission’s contractor will remove booms, winches, and other superstructures from the crane barges on site. This equipment will be cut into pieces and placed on a materials barge for recycling. Floating booms will surround the work site and contain any debris. Once lightened of equipment, a crane will remove the two smaller barges directly from the water. The largest barge will be refloated and towed by water to the Mare Island shipyard, where it will be removed from the water and demolished. Scrap metal will be recycled, and other debris will be hauled to a landfill for disposal. Click here for the staff report that accompanied the plan.

Small Populations in Jeopardy: A Delta Smelt Case Study

Social Science Research Network (SSRN) | February 21st, 2021

Under §7 of the federal Endangered Species Act, federal agencies must ensure that actions they authorize, fund, or carry out are “not likely to jeopardize the continue

Under §7 of the federal Endangered Species Act, federal agencies must ensure that actions they authorize, fund, or carry out are “not likely to jeopardize the continued existence of any endangered species or threatened species or result in the destruction or adverse modification of habitat of such species.” For species with low and declining populations, applying this standard is legally and scientifically difficult. The U.S. Fish and Wildlife Service (FWS) faced this problem in its recent biological opinion (BiOp) analyzing impacts to threatened Delta smelt from water project operations in the California Delta. FWS concluded the “species’ recent abundance trends strongly suggest it is in the midst of demographic collapse,” and most recent surveys to locate smelt have failed to find them. Nevertheless, FWS approved agency actions that will likely increase extinction risk for Delta smelt. This Comment illustrates, through a case study of the Delta smelt BiOp, the difficulties in making ESA jeopardy determinations for species on the brink of extinction. We conclude that the myriad challenges inherent in conservation of some small and declining populations make reasoned §7 analysis difficult, bordering on impossible.

Small Tributaries Pollutants of Concern Reconnaissance Monitoring: Application of Storm-event Loads and Yields-Based and Congener-Based PCB Site Prioritization Methodologies

San Francisco Estuary Institute (SFEI) | January 12th, 2022

With RMP funding allocated in 2017 and 2018, a pilot study was completed using a subset of data from watersheds in San Mateo and Santa Clara Counties to build new methods

With RMP funding allocated in 2017 and 2018, a pilot study was completed using a subset of data from watersheds in San Mateo and Santa Clara Counties to build new methods for organizing and analyzing the existing stormwater reconnaissance data that will provide further evidence to support decisions about which watersheds may be of interest for prioritized management focus. The pilot study resulted in two new analysis methodologies outlined in two companion reports: Davis, J.A. and Gilbreath, A.N., 2019. Small Tributaries Pollutants of Concern Reconnaissance Monitoring: Pilot Evaluation of Source Areas Using PCB Congener Data. SFEI Contribution No. 956. San Francisco Estuary Institute, Richmond, California. McKee, L.J., Gilbreath, A.N., Hunt, J.A., Wu, J., Yee, D., and Davis, J.A., 2019. Small tributaries pollutants of concern reconnaissance monitoring: Loads and yields-based prioritization methodology pilot study. SFEI Contribution No. 817. San Francisco Estuary Institute, Richmond, California. In this final report, we describe a few enhancements to the storm-event loads and yields method and then apply both methods to a much larger data set and provide the resulting database to support stormwater management and decision making.

Small Tributaries Pollutants of Concern Reconnaissance Monitoring: Loads and Yields-based Prioritization Methodology Pilot Study

San Francisco Estuary Institute (SFEI) | October 1st, 2019

Watershed yields (mass exported per unit watershed area) can be used as an indicator variable to help identify watersheds or source areas of higher management interest i

Watershed yields (mass exported per unit watershed area) can be used as an indicator variable to help identify watersheds or source areas of higher management interest in relation to mass loads that impact the Bay. When prioritization includes an analysis of uncertainty, a recommendation can also be made for priority investigations necessary to reduce uncertainties. A method is presented for generating comparable yield estimates for small industrial watersheds where only a single storm has been sampled and for which a watershed boundary has been generated. The method generates standardized storm-based yields for each sampled site for a 0.5-year annual return frequency storm with 2-hour peak rainfall intensity. No attempt has been made to estimate annual average yields (the metric upon which the TMDL was based).