Passage and Flow Considered Anew: Wild Salmon Restoration Via Hyrdo Relicensing

University of Montana | May 24th, 2016

Patterns and magnitude of flow alteration in California, USA

Freshwater Biology (Wiley) | December 27th, 2017

The importance of the natural flow regime to stream and river health has received growing attention over the last two decades. Quantifying natural river flows has become

The importance of the natural flow regime to stream and river health has received growing attention over the last two decades. Quantifying natural river flows has become an essential component of water resource planning, including assessments of water supplies (Vicuna,Maurer, Joyce, Dracup, & Purkey, 2007; Wurbs, 2005), reservoir operations (Hejazi, Cai, & Ruddell, 2008) and drought risk (Meko,Therrell, Baisan, & Hughes, 2001). Understanding the natural flow regime is also crucial for managing stream ecosystems.

Patterns in the use of a restored California floodplain by native and alien fishes

University of California, Davis (UC Davis) | July 7th, 2007

Fishes were sampled on the restored floodplain of the Cosumnes River in Central California in order to determine patterns of floodplain use. The floodplain was sampled fo

Fishes were sampled on the restored floodplain of the Cosumnes River in Central California in order to determine patterns of floodplain use. The floodplain was sampled for seven years (1998-2002, 2004-2005) during the winter-spring flooding season. The fishes fell into five groups: (1) floodplain spawners, (2) river spawners, (3) floodplain foragers, (4) floodplain pond fishes, and (5) inadvertent users. Eight of the 18 abundant species were natives, while the rest were aliens. There was a consistent pattern of floodplain use, modified by timing and extent of flooding. The first fishes to appear were floodplain foragers, inadvertent users, and juvenile Chinook salmon (river spawners). Next were floodplain spawners, principally Sacramento splittail and common carp. At the end of the season, in ponds of residual water, non-native annual fishes, mainly inland silverside and western mosquitofish, became abundant. Adult spawners left when inflow decreased; their juveniles persisted as long as flood pulses kept water levels up and temperatures low. Juvenile splittail and carp quickly grew large enough to dominate floodplain fish samples, along with smaller numbers of juvenile Sacramento sucker and pikeminnow (river spawners). Such juveniles left the Relatively few fishes that used the floodplain for spawning or rearing became stranded, except late season alien fishes. Most alien fishes had resident populations in adjacent river, sloughs, and ditches and were not dependent on the floodplain for persistence. This indicates that Central Valley floodplains managed to favor native fishes should have the following characteristics: (1) extensive early season flooding, (2) complete drainage by the end of the flooding season, (3) few areas with permanent water, (4) a mosaic of physical habitats, (5) regular annual flooding but with high variability in flood regime.

Patterns of Freshwater Species Richness, Endemism, and Vulnerability in California

PLOS | July 6th, 2015

Per- and polyfluoroalkyl substances (PFASs) in San Francisco Bay wildlife: Temporal trends, exposure pathways, and notable presence of precursor compounds

Chemosphere (Elsevier) | April 21st, 2017

Concentrations of perfluorooctane sulfonate (PFOS) in San Francisco Bay (SF Bay) wildlife have historically been among the highest reported globally. To track continuing

Concentrations of perfluorooctane sulfonate (PFOS) in San Francisco Bay (SF Bay) wildlife have historically been among the highest reported globally. To track continuing exposures to PFASs and assess the impact of the 2002 phase-out of production of PFOS and related chemicals in the US, nine perfluoroalkyl carboxylic acids (PFCAs; C4-C12), three perfluoroalkyl sulfonic acids (PFSAs; C4, C6, C8) and perfluorooctane sulfonamide (PFOSA, a PFOS precursor) were measured in SF Bay cormorant eggs in 2012 and harbor seal serum sampled between 2009 and 2014. PFOS remained the dominant perfluoroalkyl acid (PFAA) in both cormorant eggs (36.1–466 ng/g) and seals (12.6–796 ng/g) from 2012 and 2014, respectively. Concentrations in seal and bird eggs from the South Bay have declined approximately 70% in both matrices. To elucidate potential pathways of exposure, prey fish, sediments and wastewater effluent were analyzed for PFASs, and in the case of sediment and effluent, a suite of PFAA precursors. PFOS was the dominant PFAA in prey fish and sediment. In effluent, different mixtures of PFAAs were measured, with PFOS, PFHxA, and PFOA detected in the highest concentrations. Polyfluoroalkyl phosphate diesters (PFCA-precursors) were observed at concentrations over an order of magnitude higher than PFCAs in sediment, highlighting their importance as a potential, on-going source of PFCAs to SF Bay wildlife. These findings suggest that the PFOS phase-out has resulted in reduced burdens to wildlife in SF Bay, but that exposure to diverse and incompletely characterized PFASs continues.

Persistent spatial structuring of coastal ocean acidification in the California Current System

Nature Portfolio (Springer Nature) | May 31st, 2017

The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA

The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA exposure across these early impact systems, however, is highly uncertain and limits our understanding of whether and how spatial management actions can be deployed to ameliorate future impacts. Through a novel coastal OA observing network, we have uncovered a remarkably persistent spatial mosaic in the penetration of acidified waters into ecologically-important nearshore habitats across 1,000 km of the California Current Large Marine Ecosystem. In the most severe exposure hotspots, suboptimal conditions for calcifying organisms encompassed up to 56% of the summer season, and were accompanied by some of the lowest and most variable pH environments known for the surface ocean. Persistent refuge areas were also found, highlighting new opportunities for local adaptation to address the global challenge of OA in productive coastal systems.

Persistent spatial structuring of coastal ocean acidification in the California Current System

Nature Portfolio (Springer Nature) | May 31st, 2017

The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA e

The near-term progression of ocean acidification (OA) is projected to bring about sharp changes in the chemistry of coastal upwelling ecosystems. The distribution of OA exposure across these early-impact systems, however, is highly uncertain and limits our understanding of whether and how spatial management actions can be deployed to ameliorate future impacts. Through a novel coastal OA observing network, we have uncovered a remarkably persistent spatial mosaic in the penetration of acidified waters into ecologically-important nearshore habitats across 1,000 km of the California Current Large Marine Ecosystem. In the most severe exposure hotspots, suboptimal conditions for calcifying organisms encompassed up to 56% of the summer season, and were accompanied by some of the lowest and most variable pH environments known for the surface ocean. Persistent refuge areas were also found, highlighting new opportunities for local adaptation to address the global challenge of OA in productive coastal systems.

Pesticide Mixtures in the Sacramento–San Joaquin Delta, 2016–17: Results from Year 2 of the Delta Regional Monitoring Program

U.S. Geological Survey (USGS) | December 6th, 2019

Petition For Rulemaking to Set Minimum Flows on the Shasta River

Mount Shasta Bioregional Ecology Center | January 20th, 2024

Decades of scientific inquiry make clear that adequate quality and quantity of flows are needed to prevent remaining fish populations from further decline. Yet this scien

Decades of scientific inquiry make clear that adequate quality and quantity of flows are needed to prevent remaining fish populations from further decline. Yet this science is not self-executing; effective government intervention is necessary to prevent the extirpation of salmonids in the Shasta. This type of government action is at the core of the Public Trust Doctrine, which requires the government to act as a trustee over public trust resources, and to the extent feasible, step in to protect these resources from over-allocation and over-use.

Phenomenological vs. biophysical models of thermal stress in aquatic eggs

Ecology Letters (Wiley) | January 1st, 2017

Predicting species responses to climate change is a central challenge in ecology. These predictions are often based on lab-derived phenomenological relationships between

Predicting species responses to climate change is a central challenge in ecology. These predictions are often based on lab-derived phenomenological relationships between temperature and fitness metrics. We tested one of these relationships using the embryonic stage of a Chinook salmon population. We parameterised the model with laboratory data, applied it to predict survival in the field, and found that it significantly underestimated field-derived estimates of thermal mortality. We used a biophysical model based on mass transfer theory to show that the discrepancy was due to the differences in water flow velocities between the lab and the field. This mechanistic approach provides testable predictions for how the thermal tolerance of embryos depends on egg size and flow velocity of the surrounding water. We found support for these predictions across more than 180 fish species, suggesting that flow and temperature mediated oxygen limitation is a general mechanism underlying the thermal tolerance of embryos.