Evaluation and Refinement of Chlorophyll-a Algorithms for High-Biomass Blooms in San Francisco Bay

Remote Sensing (MDPI) | March 21st, 2024

Evaluation of extinction risk for stream fishes within an urban riverscape using population viability analysis

Aquatic Conservation: Marine and Freshwater Ecosystems (Wiley) | June 19th, 2024

Evidence of Landlocked Chinook Salmon Populations in California

North American Journal of Fisheries Management (Taylor & Francis) | November 10th, 2015

Natural reproduction of adfluvial Chinook Salmon Oncorhynchus tshawytscha has been documented in their native and introduced range but not in California, the southern end

Natural reproduction of adfluvial Chinook Salmon Oncorhynchus tshawytscha has been documented in their native and introduced range but not in California, the southern end of their native range. A combination of anecdotal evidence and survey data suggests that successful spawning by Chinook Salmon reared in California reservoirs could be common. The planted juveniles are often from different basins and are genetically distinguishable from local salmon populations below reservoirs. Consequently, the possibility of behavioral and genetic interactions may lead to complications of restoration efforts via trap and haul programs. The full extent of this phenomenon needs to be documented before trap and haul programs are initiated to reintroduce salmon above reservoirs.

Examining the causes and consequences of hybridization during Chinook salmon reintroductions: using the San Joaquin River as a restoration case study of management options

University of California, Davis (UC Davis) | June 15th, 2014

Successful salmonid restoration efforts depend upon an understanding of the evolutionary processes that historically shaped population diversity, as well as the realities

Successful salmonid restoration efforts depend upon an understanding of the evolutionary processes that historically shaped population diversity, as well as the realities of currently available, altered river systems. Habitat alterations over the past century have dramatically changed the ecological forces that shaped salmonid speciation and evolution, bringing formerly separate and distinct populations into contact and in some cases leading to hybridization. Hybridization can threaten the genetic diversity within salmonid species and may affect the outcomes of restoration efforts. Here we use the San Joaquin River Restoration as a case study to discuss some of the genetic challenges of Chinook salmon restoration in a newly reopened habitat. We discuss a range of genetic management strategies—from passive reintroduction to tightly managed, active reintroduction—and the strengths and weaknesses of each approach.

Exploring scientific and management implications of upper trophic level food webs in the Delta

Delta Stewardship Council (Delta Council) | April 17th, 2024

The Sacramento-San Joaquin Delta (the Delta) has complex and evolving ecosystems characterized by multiple food webs that vary in time and space. Here, food webs are defi

The Sacramento-San Joaquin Delta (the Delta) has complex and evolving ecosystems characterized by multiple food webs that vary in time and space. Here, food webs are defined as the network of species interactions (competition, predation) and interactions with their environment that are related through the flow of energy through the ecosystem (e.g., Paine 1980). Physical modifications, in addition to the introduction of non-native species and the changing climate, have significantly altered the structure and energetic pathways of the food webs for decades. The science clearly suggests that predicting the impacts of habitat restoration, fisheries, changes in environmental drivers (e.g., climate, changes in nutrient loading, invasive species) on the ecological carrying capacity and productivity of the Delta, as well as the bioaccumulation of contaminants on species or the ecosystem, requires an understanding of food web processes.

Exposure history determines pteropod vulnerability to ocean acidification along the US West Coast

Nature Portfolio (Springer Nature) | July 3rd, 2017

The pteropod Limacina helicina frequently experiences seasonal exposure to corrosive conditions (Ωar  < 1) along the US West Coast and is recognized as

The pteropod Limacina helicina frequently experiences seasonal exposure to corrosive conditions (Ωar  < 1) along the US West Coast and is recognized as one of the species most susceptible to ocean acidification (OA). Yet, little is known about their capacity to acclimatize to such conditions. We collected pteropods in the California Current Ecosystem (CCE) that differed in the severity of exposure to Ωar conditions in the natural environment. Combining field observations, high-CO2 perturbation experiment results, and retrospective ocean transport simulations, we investigated biological responses based on histories of magnitude and duration of exposure to Ωar < 1. Our results suggest that both exposure magnitude and duration affect pteropod responses in the natural environment. However, observed declines in calcification performance and survival probability under high CO2 experimental conditions do not show acclimatization capacity or physiological tolerance related to history of exposure to corrosive conditions. Pteropods from the coastal CCE appear to be at or near the limit of their physiological capacity, and consequently, are already at extinction risk under projected acceleration of OA over the next 30 years. Our results demonstrate that Ωar exposure history largely determines pteropod response to experimental conditions and is essential to the interpretation of biological observations and experimental results.

Facilitating Adaptive Management in California’s Sacramento–San Joaquin Delta

University of California, Davis (UC Davis) | July 1st, 2017

Uncertainties in understanding ecosystems increase the risk that management will fail to achieve desired results. Adaptive management is a structured, iterative applicati

Uncertainties in understanding ecosystems increase the risk that management will fail to achieve desired results. Adaptive management is a structured, iterative application of science-based knowledge to reduce uncertainties and build flexibility into decision-making. However, adaptive management is more easily planned than implemented, and it is only beginning to be applied in the California’s Sacramento–San Joaquin Delta. We draw from two assessments of adaptive management in the Delta and examples of its use elsewhere to suggest how the process can be facilitated. Although a highly structured adaptive-management process may not always be needed, several elements are essential. Adaptive management should begin by clearly identifying the problem, goals, and objectives; recognizing uncertainties; identifying decision points and alternative approaches; recognizing when adjustments are needed and having the flexibility to make them; and considering societal and political constraints. Model complexity should be matched to that of the system and management needs; experiments can help unravel causal relationships. Monitoring, analyses, and syntheses require comprehensive data-management systems. More frequent and organized communications among scientists, managers, stakeholders, and decision-makers are necessary. We propose the establishment of an “Adaptive Management Team” to coordinate efforts across the management spectrum of the Delta and to provide guidance and link individual projects to shared approaches and experiences. Reliable long-term support will be needed to assess results of management actions, adjust approaches where improvement is likely, and strive toward the legislated goals of enhancing the Delta ecosystem while also providing reliable water supplies to much of California, and doing both these things in a manner that protects values of the Delta as a place where people live and work. 

Feather River Salmonid Habitat Improvement Project Proposed Mitigated Negative Declaration

California Department of Water Resources (DWR) | October 6th, 2022

An initial study/proposed mitigated negative declaration (IS/MND) has been prepared to assess the proposed project’s potential effects on the physical environment and t

An initial study/proposed mitigated negative declaration (IS/MND) has been prepared to assess the proposed project’s potential effects on the physical environment and the significance of those effects. Based on the analysis conducted in the IS, DWR has determined that the proposed project would not have any significant adverse effects on the environment because environmental commitments and mitigation measures would be implemented to reduce impacts to a less-than-significant level.

Field Assessment of Naled and Its Primary Degradation Product (Dichlorvos) in Aquatic Ecosystems Following Aerial Ultra-low Volume Application for Mosquito Control

Archives of Environmental Contamination and Toxicology (Springer) | March 13th, 2023

Naled, an organophosphate insecticide, is applied aerially at ultra-low volumes over aquatic ecosystems near Sacramento, California, USA, during summer months for mosqui

Naled, an organophosphate insecticide, is applied aerially at ultra-low volumes over aquatic ecosystems near Sacramento, California, USA, during summer months for mosquito control. Two ecosystem types (rice fields and a flowing canal) were sampled in 2020 and 2021. Naled and its primary degradation product (dichlorvos) were measured in water, biofilm, grazer macroinvertebrates, and omnivore/predator macroinvertebrates (predominantly crayfish). Maximum naled and dichlorvos concentrations detected in water samples one day after naled application were 287.3 and 5647.5 ng/L, respectively, which were above the U.S. Environmental Protection Agency’s aquatic life benchmarks for invertebrates. Neither compound was detected in water more than one day after the application. Dichlorvos, but not naled, was detected in composite crayfish samples up to 10 days after the last aerial application. Detections in water from the canal showed that the compounds were transported downstream of the target application area. Factors such as vector control flight paths, dilution, and transport through air and water likely affected concentrations of naled and dichlorvos in water and organisms from these aquatic ecosystems.

Final Environmental Assessment Sacramento River Winter-Run Chinook Salmon Management Measures for Fisheries Managed under the Pacific Coast Salmon Fishery Management Plan

National Marine Fisheries Service (NMFS) | March 1st, 2018