Delta Operations for Salmonids and Sturgeon (DOSS) Technical Working Group

Delta Stewardship Council (Delta Council) | November 1st, 2018

Delta smelt resiliency strategy

California Department of Water Resources (DWR) | July 11th, 2016

The Delta Smelt Resiliency Strategy (Strategy) is a science-based document that has been prepared by the State of California (State) to voluntarily address both immediate

The Delta Smelt Resiliency Strategy (Strategy) is a science-based document that has been prepared by the State of California (State) to voluntarily address both immediate and near-term needs of Delta Smelt, to promote their resiliency to drought conditions as well as future variations in habitat conditions. The Strategy relies on the MAST Report and Conceptual Models (IEP 2015) to articulate a suite of actions that can be implemented in the next few years that are intended to benefit Delta Smelt. Although the feasibility and effectiveness of each action included in the Strategy requires further exploration and study, the Strategy is an aggressive approach to implementing any actions that can be implemented in the near term, can be implemented by the State with minimal involvement of other entities, and have the potential to benefit Delta Smelt. State agencies that could implement this Strategy include Department of Water Resources (DWR), Department of Fish and Wildlife (DFW), and Division of Boating and Waterways (DBW). Several of the actions identified in this Strategy could also benefit other species, and coordination across various resource management agencies as appropriate may allow for benefits beyond Delta Smelt. All of the actions will be in compliance with applicable laws, including the Federal Endangered Species Act, California Endangered Species Act, California Environmental Quality Act, National Environmental Policy Act, and the Federal Clean Water Act. The Collaborative Science and Adaptive Management Program (CSAMP) will be used to determine the appropriate research approach to designing and assessing the outcomes of these management actions individually and synergistically. Additionally, it is expected that the Bureau of Reclamation (Reclamation) would participate in the implementation of this Strategy, including providing enhanced outflows in 2016.

Delta Smelt: Life History and Decline of a Once-Abundant Species in the San Francisco Estuary

University of California, Davis (UC Davis) | July 1st, 2016

The delta smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain

The delta smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain the population. As a listed species living in the central node of California’s water supply system, delta smelt has been the focus of a large research effort to understand causes of decline and identify ways to recover the species. Since 2008, a remarkable record of innovative research on delta smelt has been achieved, which is summarized here. Unfortunately, research has not prevented the smelt’s continued decline, which is the result of multiple, interacting factors. A major driver of decline is change to the Delta ecosystem from water exports, resulting in reduced outflows and high levels of entrainment in the large pumps of the South Delta. Invasions of alien species, encouraged by environmental change, have also played a contributing role in the decline. Severe drought effects have pushed delta smelt to record low levels in 2014–2015 and diverse and substantial management actions are needed to preserve delta smelt.

Delta Vision Strategic Plan

State of California | October 17th, 2008

When it was created by Governor Schwarzenegger’s Executive Order S-17-06 in 2006, the charge of the Delta Vision Blue Ribbon Task Force (Task Force) was nothing less th

When it was created by Governor Schwarzenegger’s Executive Order S-17-06 in 2006, the charge of the Delta Vision Blue Ribbon Task Force (Task Force) was nothing less than to create a vision to repair the ecological damage to the Sacramento-San Joaquin River Delta (Delta), and then prepare a strategic plan which would sustain the Delta in future decades while ensuring a reliable water supply for the two-thirds of California’s population who depend in whole or in part on water from the Delta.

Delta Vision Strategic Plan -- from Phil Isenberg, 1939-2023

State of California | October 17th, 2008

When it was created by Governor Schwarzenegger’s Executive Order S-17-06 in 2006, the charge of the Delta Vision Blue Ribbon Task Force (Task Force) was nothing less th

When it was created by Governor Schwarzenegger’s Executive Order S-17-06 in 2006, the charge of the Delta Vision Blue Ribbon Task Force (Task Force) was nothing less than to create a vision to repair the ecological damage to the Sacramento-San Joaquin River Delta (Delta), and then prepare a strategic plan which would sustain the Delta in future decades while ensuring a reliable water supply for the two-thirds of California’s population who depend in whole or in part on water from the Delta.

Department of Fish and Game Rationale for Effects of Exports

California Department of Fish and Wildlife (CDFW) | November 2nd, 2011

This document describes the California Department of Fish and Game (DFG) methodology to quantify the surface area in the Sacramento – San Joaquin delta estuary (Delta)

This document describes the California Department of Fish and Game (DFG) methodology to quantify the surface area in the Sacramento – San Joaquin delta estuary (Delta) that is impacted by the operations of the State Water Project (SWP) and Central Valley Project (CVP) pumping facilities. In order to estimate the mitigation required to offset direct and indirect losses of Fish Species due to impacts to surface acres of aquatic habitat in the Delta accounted to the SWP Delta Pumping Facilities operations, DFG used an analysis based on conclusions and information contained in a manuscript that utilizes the Delta Simulation Model-2 Particle Tracking Model (DSM2PTM) (Kimmerer and Nobriga, 2008). This methodology provides the general loss of “particles” to the Delta which is a surrogate for loss of productivity and fish life stages vulnerable to these effects.

Development of Flow Criteria for the Sacramento-San Joaquin Delta Ecosystem

California State Water Resources Control Board (SWRCB) | August 4th, 2010

Water Code section 85086 (See Appendix B), contained in the Delta Reform Act, was enacted as part of the comprehensive package of water legislation adopted in November 20

Water Code section 85086 (See Appendix B), contained in the Delta Reform Act, was enacted as part of the comprehensive package of water legislation adopted in November 2009. Water Code section 85086 requires the State Water Resources Control Board (State Water Board) to use the best available scientific information gathered as part of a public process conducted as an informational proceeding to develop new flow criteria for the Delta ecosystem to protect public trust resources. The purpose of the flow criteria is to inform planning decisions for the Delta Plan and the BDCP. The Legislature intended to establish an accelerated process to determine the instream flow needs of the Delta in order to facilitate the planning decisions required to meet the objectives of the Delta Plan. Accordingly, Water Code section 85086 requires the State Water Board to develop the flow criteria within nine months of enactment of the statute and to submit its flow criteria determinations to the Council within 30 days of their development. This report, required by Water Code section 85086(c) (2009 Delta Reform Act) in 2010, suggests the flows that would be needed in the Delta ecosystem if fishery protection was the sole purpose for which its waters were put to beneficial use. In keeping with the narrow focus of the legislation, this report only presents a technical assessment of flow and operational requirements to provide fishery protection under existing conditions.  

Dioxin Issue Paper: Expert Panel Response and Recommendations

Bay Area Clean Water Agencies (BACWA) | February 11th, 2010

Congeners of dioxins and furans have been found in the San Francisco Bay in several species of fish sometimes used for human consumption, causing the State of California

Congeners of dioxins and furans have been found in the San Francisco Bay in several species of fish sometimes used for human consumption, causing the State of California to issue an interim fish consumption advisory. This fish consumption advisory has been used by the US Environmental Protection Agency and the State of California as a basis for placing the Bay on the State’s list of impaired waterways required by the Clean Water Act. As a consequence, water quality-based discharge limits for dioxins are now being placed into NPDES permits for dischargers to the Bay where dioxins or furans have been detected in effluents. At the request of the Bay Area Clean Water Agencies (BACWA), an association of municipal wastewater treatment utilities, the San Francisco Estuary Institute convened a panel of three qualified experts to review the factual case and to make recommendations. As a starting point, BACWA prepared a draft “Dioxin Issue Paper” on February 15, 2008, detailing the environmental problem, the regulatory context, and the specific  difficulties presented by dioxin-related effluent limits in permits. The draft Dioxin Issue Paper also outlined an array of possible regulatory strategies which might help resolve the difficulties faced by dischargers, ranging from strategies related to impairment listing to strategies related to NPDES permit issuance. Panel members were asked to review the draft Dioxin Issue Paper, make recommendations for improvement, and respond to a number of questions posed by the San Francisco Estuary Institute. The Panel met in Oakland, California, on February 22, 2008, at the San Francisco Estuary Institute. We were joined by representatives of the San Francisco Bay Regional Water Quality Control Board, the US Environmental Protection Agency, BACWA, and others with expertise in the field. Subsequently, we held numerous conference calls and agreed that we would address the questions posed by the Institute in both short- and long-term contexts. For the short term, we agreed upon recommendations that could help alleviate some of the dioxin-related regulatory difficulties faced by municipal wastewater treatment plants. For the long-term, however, we agreed that the problems faced by the dischargers are best addressed by solutions for the dioxin contamination problems in the Bay as a whole. We therefore also agreed to recommend a series of steps towards developing an integrated multi-media strategy for reducing dioxin levels in the San Francisco Bay.

Disentangling Stationary and Dynamic Estuarine Fish Habitat to Inform Conservation: Species-Specific Responses to Physical Habitat and Water Quality in San Francisco Estuary

American Fisheries Society (AFS) | October 12th, 2021

Estuaries represent critical aquatic habitat that connects surface water distributed between Earth’s landmasses and oceans. They are dynamic transitional ecosystems, wh

Estuaries represent critical aquatic habitat that connects surface water distributed between Earth’s landmasses and oceans. They are dynamic transitional ecosystems, which provide important habitat for fishes and other aquatic organisms. Effective conservation of species inhabiting estuaries requires knowledge of the habitat features that drive their abundance and distribution. We sought to elucidate how stationary (i.e., wetlands, shoals, and channels) and dynamic (i.e., salinity, temperature, turbidity, and chlorophyll concentration) habitat features interact to drive distributions of individual fish species. The Pacific coast of the conterminous United States has over 400 estuaries of various types. The largest (historical surface area) is San Francisco Estuary, California. We conducted extensive field observations of fishes in the central San Francisco Estuary among stationary habitat types (i.e., wetland, shoal, and channel) over a 19-month period encompassing substantial variability in dynamic water quality conditions. Most of the species observed, especially native species of special management interest, were associated with tidal wetland habitat. Few species exhibited associations with water quality conditions driven by seasonal (temperature) or a combination of broad- and fine-scale ecosystem processes (salinity and turbidity). Our study provides (1) an empirical demonstration of how researchers can deal with the complex and dynamic expressions of habitat in estuarine systems to address urgent natural resource problems and (2) a clear demonstration of the urgent need for habitat restoration and its likely outcome in systems such as San Francisco Estuary. Restoration of suitable tidal wetland habitat on the West Coast of the United States is likely to be an effective conservation tool to support estuarine fishes given that over 90% of historical tidal wetland habitat in San Francisco Estuary and 85% of vegetated wetland habitat along the Pacific coast of the United States has been lost due to human modification.

Dissolved Oxygen in South San Francisco Bay: Variability, Important Processes, and Implications for Understanding Fish Habitat

San Francisco Estuary Institute (SFEI) | October 30th, 2018

Dissolved oxygen (DO) is a key water quality parameter that is related to nutrient enrichment in estuaries around the world. In 2017-2018, the San Francisco Estuary Inst

Dissolved oxygen (DO) is a key water quality parameter that is related to nutrient enrichment in estuaries around the world. In 2017-2018, the San Francisco Estuary Institute (SFEI) launched a study to investigate the potential effects of low-DO on habitat quality in Lower South Bay (LSB) to inform decisions about nutrient regulation. The goal of the study was to understand where and when regions of LSB provide adequate DO to support resident fish species. The study approach involved convening a team of experts to advise on methods, analyzing high frequency DO measurements from seven mooring stations in LSB, and partnering with researchers from UC Davis to interpret several years of monthly fish abundance data in LSB relative to DO and other factors.