Quantification of pre-screen loss of juvenile steelhead in Clifton Court Forebay

California Department of Water Resources (DWR) | August 26th, 2008

Quantification Settlement Agreement and Related Agreements and Documents to which Southern California Agencies are Signatories

California Natural Resources Agency (CNRA) | October 10th, 2003

Rapid decline of California’s native inland fishes: a status assessment

University of California, Davis (UC Davis) | November 1st, 2010

Degradation of freshwater ecosystems is a global crisis best understood through intensive study of well-studied regional faunas. A quantitative protocol was used

Degradation of freshwater ecosystems is a global crisis best understood through intensive study of well-studied regional faunas. A quantitative protocol was used to determine conservation status of all 129 freshwater fishes native to California. Seven (5%) are extinct; 34 (26%) qualified for listing as endangered or threatened species; 32 (25%) were rated as imperiled, qualifying as California Species of Special Concern, with potential for listing; 34 (26%) rated being on a watch list and 22 (17%) were found to be relatively secure. Of 31 species officially listed under federal and state endangered species acts, 17 (55%) clearly qualified for listing under our criteria and 12 (39%) were rated as species of special concern. Conversely, of 34 extant species with the lowest ratings under our criteria, only 17 (50%) were officially listed. Climate change, area occupied and anthropogenic threats had the largest negative impact on status. Of the 15 categories of anthropogenic threats analyzed, those most likely to diminish status were alien species, agriculture and dams. Overall, 83% of California’s freshwater fishes are extinct, endangered, or in decline, a 16% increase since 1995 and a 21% increase since 1989. The decline seen in California’s inland fishes is probably typical of declines in areas that are less well documented, indicating a strong need for better methods of conservation of freshwater ecosystems.

Rapid emergence of climate change in environmental drivers of marine ecosystems

Nature Portfolio (Springer Nature) | March 7th, 2017

Climate change is expected to modify ecological responses in the ocean, with the potential for important effects on the ecosystem services provided to humankind

Climate change is expected to modify ecological responses in the ocean, with the potential for important effects on the ecosystem services provided to humankind. Here we address the question of how rapidly multiple drivers of marine ecosystem change develop in the future ocean. By analysing an ensemble of models we find that, within the next 15 years, the climate change-driven trends in multiple ecosystem drivers emerge from the background of natural variability in 55% of the ocean and propagate rapidly to encompass 86% of the ocean by 2050 under a ‘business-as-usual’ scenario. However, we also demonstrate that the exposure of marine ecosystems to climate change-induced stress can be drastically reduced via climate mitigation measures; with mitigation, the proportion of ocean susceptible to multiple drivers within the next 15 years is reduced to 34%. Mitigation slows the pace at which multiple drivers emerge, allowing an additional 20 years for adaptation in marine ecological and socio-economic systems alike.

Re-Oaking North Bay: A strategy for restoring native oak ecosystems, focusing on Napa and Sonoma valleys

San Francisco Estuary Institute (SFEI) | July 7th, 2020

Oaks are iconic trees in California, the defining feature of savannas and woodlands in many parts of the state. For millennia, these majestic trees have provided the e

Oaks are iconic trees in California, the defining feature of savannas and woodlands in many parts of the state. For millennia, these majestic trees have provided the ecological foundation upon which thousands of other organisms depend. Their cultural significance is equally profound: they are of central importance to diverse indigenous groups, and are prized for the many benefits they provide California residents. Vast expanses of oak savanna historically occupied the rich alluvial soils of Napa and Sonoma valleys. The immense and long-lived valley oak (Quercus lobata) dominated these savannas, accounting for more than 65% of trees (Dawson 2008, Grossinger et al. 2012). Early observers described the valleys as “studded with groups of oaks” (Marryat 1850), and extolled the “magnificent oaks” that were “the glory of the landscape scenery” (Smith and Elliott 1878). Black oak (Q. kelloggii), coast live oak (Q. agrifolia), and other oak species were present in smaller numbers on the valley floors and were more abundant in the hillsides (Dawson 2008, Grossinger et al. 2012). Over the past two centuries, however, much of this oak savanna has been cleared to make way for orchards, vineyards, and towns. In Napa Valley, the number of mature trees has declined from an estimated 45,000 in the early 1800s to less than 1,000 today (Grossinger et al. 2012). Valley oak habitat has been particularly affected by clearing and fragmentation: in many areas of the state, loss of valley oak woodland exceeds 90% (Kelly et al. 2005, Whipple et al. 2011). Documentation of this loss, and recognition of the value of oaks for both people and nature, has led to a growing desire to restore this unique ecosystem and bring back many of the benefits that oaks provide. Despite the significant changes the North Bay landscape has experienced since European settlement, there are opportunities to restore oaks in settings as diverse as backyards, parks, streets, farms, vineyards, and creeksides.

Re-Oaking Silicon Valley: Building Vibrant Cities with Nature

San Francisco Estuary Institute (SFEI) | August 1st, 2017

In this report, we investigate how integrating components of oak woodlands into developed landscapes — “re-oaking” — can provide an array of valuable functions fo

In this report, we investigate how integrating components of oak woodlands into developed landscapes — “re-oaking” — can provide an array of valuable functions for both wildlife and people. Re-oaking can increase the biodiversity and ecological resilience of urban ecosystems, improve critical urban forest functions such as shade and carbon storage, and enhance the capacity of cities to adapt to a changing climate. We focus on Silicon Valley, where oak woodland replacement by agriculture and urbanization tells a story that has occurred in many other cities in California. We highlight how the history and ecology of the Silicon Valley landscape can be used as a guide to plan more ecologically resilient cities in the Bay Area, within the region and elsewhere in California. We see re-oaking as part of, and not a substitute for, the important and broader oak woodland conservation efforts taking place throughout the state.  

Recent declines in salmon body size impact ecosystems and fisheries

Nature Portfolio (Springer Nature) | August 19th, 2020

Declines in animal body sizes are widely reported and likely impact ecological interactions and ecosystem services. For harvested species subject to multiple stressors, l

Declines in animal body sizes are widely reported and likely impact ecological interactions and ecosystem services. For harvested species subject to multiple stressors, limited understanding of the causes and consequences of size declines impedes prediction, prevention, and mitigation. We highlight widespread declines in Pacific salmon size based on 60 years of measurements from 12.5 million fish across Alaska, the last largely pristine North American salmon-producing region. Declines in salmon size, primarily resulting from shifting age structure, are associated with climate and competition at sea. Compared to salmon maturing before 1990, the reduced size of adult salmon after 2010 has potentially resulted in substantial losses to ecosystems and people; for Chinook salmon we estimated average per-fish reductions in egg production (−16%), nutrient transport (−28%), fisheries value (−21%), and meals for rural people (−26%). Downsizing of organisms is a global concern, and current trends may pose substantial risks for nature and people.

Recent global decline in endorheic basin water storages

Nature Portfolio (Springer Nature) | November 30th, 2018

Endorheic (hydrologically landlocked) basins spatially concur with arid/semi-arid climates. Given limited precipitation but high potential evaporation, their water storag

Endorheic (hydrologically landlocked) basins spatially concur with arid/semi-arid climates. Given limited precipitation but high potential evaporation, their water storage is vulnerable to subtle flux perturbations, which are exacerbated by global warming and human activities. Increasing regional evidence suggests a probably recent net decline in endorheic water storage, but this remains unquantified at a global scale. By integrating satellite observations and hydrological modelling, we reveal that during 2002–2016 the global endorheic system experienced a widespread water loss of about 106.3 Gt yr−1, attributed to comparable losses in surface water, soil moisture and groundwater. This decadal decline, disparate from water storage fluctuations in exorheic basins, appears less sensitive to El Niño–Southern Oscillation-driven climate variability, which implies a possible response to longer-term climate conditions and human water management. In the mass-conserved hydrosphere, such an endorheic water loss not only exacerbates local water stress, but also imposes excess water on exorheic basins, leading to a potential sea level rise that matches the contribution of nearly half of the land glacier retreat (excluding Greenland and Antarctica). Given these dual ramifications, we suggest the necessity for long-term monitoring of water storage variation in the global endorheic system and the inclusion of its net contribution to future sea level budgeting.

Reclamation’s NEPA Handbook

U.S. Bureau of Reclamation (USBR) | January 31st, 2012

This edition of the Bureau of Reclamation’s (Reclamation) National Environmental Policy Act (NEPA) Handbook has been developed in response to the Council on Environment

This edition of the Bureau of Reclamation’s (Reclamation) National Environmental Policy Act (NEPA) Handbook has been developed in response to the Council on Environmental Quality’s (CEQ) and the U.S. Department of the Interior’s (Interior) implementing regulations on NEPA. These regulations state that each agency will interpret the provisions of NEPA as a supplement to its existing authority and as a mandate to view its policies and missions in the light of its national environmental objectives. This handbook has been designed as a guidance tool for use by all Reclamation staff. It should also be useful to applicants, contractors, tribal representatives, the general public, and others who may be involved in Reclamation’s NEPA process, or those who develop environmental reports for Reclamation’s use in preparing NEPA documents. This handbook describes Reclamation guidance for implementing the National Environmental Policy Act of 1969 (42 United States Code [U.S.C.] 4321, et seq.), CEQ’s Regulations for Implementing the Procedural Provisions (40 Code of Federal Regulations [CFR] Parts 1500–1508), Interior’s NEPA Regulations (43 CFR Part 46), and the Departmental Manual (DM) Chapter 516. This handbook draws these requirements together and provides guidance on how to apply them to Reclamation programs and activities. The Reclamation Manual NEPA Policy (ENV P03) refers to this handbook as the source of additional information on NEPA compliance for Reclamation. The handbook also presents and summarizes other related environmental laws and Executive orders (EO) which should be addressed during NEPA compliance. This handbook provides an overview of NEPA in chapter 2. Chapter 3 contains a general description of the requirements and procedures of NEPA. Chapter 4 provides information on integrating NEPA with other Reclamation activities. Specific information on categorical exclusion checklists (CEC), environmental assessments (EA), and environmental impact statements (EIS) can be found in chapters 5, 6, and 7, respectively. This organizational structure has been selected to allow the user to quickly locate specific, step-by-step information on the different levels of NEPA compliance. Chapter 8 addresses EIS content, and chapter 9 discusses the requirements of a record of decision (ROD). Chapters 10 and 11 present other information that can be useful in the various situations that arise in applying NEPA to Reclamation’s Federal actions. Chapter 12 concludes the handbook with information on gaining additional assistance on NEPA issues. In addition, various issues and special problems are discussed throughout the handbook. Where possible, solutions that have worked historically, or approaches that seem most reasonable, are recommended.

Reconciling fish and farms: Methods for managing California rice fields as salmon habitat

PLOS | February 24th, 2021

Rearing habitat for juvenile Chinook Salmon (Oncorhynchus tshawytscha) in California, the southernmost portion of their range, has drastically declined throughout the pa

Rearing habitat for juvenile Chinook Salmon (Oncorhynchus tshawytscha) in California, the southernmost portion of their range, has drastically declined throughout the past century. Recently, through cooperative agreements with diverse stakeholders, winter-flooded agricultural rice fields in California’s Central Valley have emerged as ecologically functioning floodplain rearing habitat for juvenile Chinook Salmon. From 2013 to 2016, we conducted a series of experiments examining methods to enhance habitat benefits for fall-run Chinook Salmon reared on winter-flooded rice fields in the Yolo Bypass, a modified floodplain managed for flood control, agriculture, and wildlife habitat in the Sacramento River Valley of California. Investigations included studying the effect of 1) post-harvest field substrate; 2) depth refugia; 3) duration of field drainage; and 4) duration of rearing occupancy on in-situ diet, growth and survival of juvenile salmon. Post-harvest substrate treatment had only a small effect on the lower trophic food web and an insignificant effect on growth rates or survival of rearing hatchery-origin, fall-run Chinook Salmon. Similarly, depth refugia, created by trenches dug to various depths, also had an insignificant effect on survival. Rapid field drainage yielded significantly higher survival compared to drainage methods drawn out over longer periods. A mortality of approximately one third was observed in the first week after fish were released in the floodplain. This initial mortality event was followed by high, stable survival rates for the remainder of the 6-week duration of floodplain rearing study. Across years, in-field survival ranged 7.4–61.6% and increased over the course of the experiments. Despite coinciding with the most extreme drought in California’s recorded history, which elevated water temperatures and reduced the regional extent of adjacent flooded habitats which concentrated avian predators, the adaptive research framework enabled incremental improvements in design to increase survival. Zooplankton (fish food) in the winter-flooded rice fields were 53-150x more abundant than those sampled concurrently in the adjacent Sacramento River channel. Correspondingly, observed somatic growth rates of juvenile hatchery-sourced fall-run Chinook Salmon stocked in rice fields were two to five times greater than concurrently and previously observed growth rates in the adjacent Sacramento River. The abundance of food resources and exceptionally high growth rates observed.