Losses of Sacramento River Chinook Salmon and Delta Smelt to Entrainment in Water Diversions in the Sacramento-San Joaquin Delta

University of California, Davis (UC Davis) | June 30th, 2008

Pumping at the water export facilities in the southern Sacramento-San Joaquin Delta kills fish at and near the associated fish-salvage facilities. Correlative analyses of

Pumping at the water export facilities in the southern Sacramento-San Joaquin Delta kills fish at and near the associated fish-salvage facilities. Correlative analyses of salvage counts with population indices have failed to provide quantitative estimates of the magnitude of this mortality. I estimated the proportional losses of Sacramento River Chinook salmon (Oncorhynchus tshawytscha) and delta smelt (Hypomesus transpacificus) to place these losses in a population context. The estimate for salmon was based on recoveries of tagged smolts released in the upper Sacramento River basin, and recovered at the fish-salvage facilities in the south Delta and in a trawling program in the western Delta. The proportion of fish salvaged increased with export flow, with a mean value around 10% at the highest export flows recorded. Mortality was around 10% if pre-salvage losses were about 80%, but this value is nearly unconstrained. Losses of adult delta smelt in winter and young delta smelt in spring were estimated from salvage data (adults) corrected for estimated pre-salvage survival, or from trawl data in the southern Delta (young). These losses were divided by population size and accumulated over the respective seasons. Losses of adult delta smelt were 1–50% (median 15%) although the highest value may have been biased upward. Daily losses of larvae and juveniles were 0–8%, and seasonal losses accumulated were 0–25% (median 13%). The effect of these losses on population abundance was obscured by subsequent 50-fold variability in survival from summer to fall.

Lower Peninsula Watershed Condition Assessment 2016: Southwest San Francisco Bay, Santa Clara County, San Francisquito to Stevens Creeks. Technical memorandum prepared for the Santa Clara Valley Water District

San Francisco Estuary Institute (SFEI) | October 2nd, 2017

This report describes baseline information about the amount and distribution of aquatic resources, and evaluates that overall ecological conditions of streams using the C

This report describes baseline information about the amount and distribution of aquatic resources, and evaluates that overall ecological conditions of streams using the California Rapid Assessment Method (CRAM), for the Lower Peninsula watershed in Santa Clara County; consisting of Stevens-Permanente Creek, Adobe Creek, southern extent of San Francisquito Creek, and their tributaries. The Lower Peninsula watershed covers approximately 98 square-miles with creeks flowing from the Santa Cruz Mountains into southwest San Francisco Bay and its tidal wetlands.  The Santa Clara Valley Water District’s (District) Safe, Clean Water and Natural Flood Protection Program has many priorities, including Priority D for restoring and protecting vital wildlife habitat, and providing opportunities for increased access to trails and open space. The D5 Project focuses on ecological data collection and analysis at a watershed scale to support the District, other County agencies and organizations in making informed ecological asset management decisions. The key performance indicators (KPIs) for D5 are to:  1. Establish new or track existing ecological levels of service for streams in 5 watersheds.  2. Reassess streams in 5 watersheds to determine if ecological levels of service are maintained or improved. 

Lower Peninsula Watershed Condition Assessment 2016. Technical memorandum prepared for the Santa Clara Valley Water District - Priority D5 Project

San Francisco Estuary Institute (SFEI) | October 2nd, 2017

This report describes baseline information about the amount and distribution of aquatic resources, and evaluates that overall ecological conditions of streams using the C

This report describes baseline information about the amount and distribution of aquatic resources, and evaluates that overall ecological conditions of streams using the California Rapid Assessment Method (CRAM), for the Lower Peninsula watershed in Santa Clara County; consisting of Stevens-Permanente Creek, Adobe Creek, southern extent of San Francisquito Creek, and their tributaries. The Lower Peninsula watershed covers approximately 98 square-miles with creeks flowing from the Santa Cruz Mountains into southwest San Francisco Bay and its tidal wetlands.

Making Nature's City: A science-based framework for building urban biodiversity

San Francisco Estuary Institute (SFEI) | July 1st, 2019

Cities will face many challenges over the coming decades, from adapting to a changing climate to accommodating rapid population growth. A related suite of challenges th

Cities will face many challenges over the coming decades, from adapting to a changing climate to accommodating rapid population growth. A related suite of challenges threatens global biodiversity, and many species face potential extinction. While urban planners and conservationists have long treated these issues as distinct, there is growing evidence that cities not only harbor a significant fraction of the world’s biodiversity, but that they can also be made more livable and resilient for people, plants, and animals through nature-friendly urban design. Urban ecological science can provide a powerful tool to guide cities towards more biodiversity-friendly design. However, current research remains scattered across thousands of journal articles and largely inaccessible to practitioners. Making Nature’s City fills this gap, synthesizing global research to develop a science-based approach for supporting nature in cities. We identify seven key elements of urban form and function that work together to maximize biodiversity, and we illustrate these elements through a case study in California’s Silicon Valley. Using the framework developed in this report, urban designers and local residents can work together to link local parks, greenways, green roofs, street trees, stormwater basins, commercial landscaping, and backyards to support biodiversity while making cities better places to live. As we envision the healthier, and more resilient cities, Making Nature’s City provides practical guidance for the many actors who together will shape the nature of cities.

Making the Delta a Better Place for Native Fishes

Orange County Coastkeeper | March 1st, 2018

The Sacramento-San Joaquin Delta is the heart of California’s water delivery system, connecting the precipitation-rich regions of the north with the dry farmlands and

The Sacramento-San Joaquin Delta is the heart of California’s water delivery system, connecting the precipitation-rich regions of the north with the dry farmlands and demanding urban areas of the south and coast, including the Bay Area. Scarce water resources create conflicts between people and fishes; as demand by people for water grows, less water is available for the environment. This white paper explores the ways to keep the native fishes, and the functional ecosystems they require, from disappearing. Our analysis is fish-oriented because salmon, smelt, and other declining fishes are major drivers of decisions on where to focus aquatic restoration efforts.  The goals of this white paper are to first provide a brief introduction to the Delta and then to describe why restoration of native fishes and natural processes is such a challenge in this system. We follow this with some general guidelines for restoration projects in the Delta and apply those guidelines with a project evaluation tool. We used this tool to evaluate 26 projects, mostly part of EcoRestore, to provide insights to help determine action items. We then present 17 action items, listed below, some of which can be accomplished fairly quickly, some that will take longer, and few that will have to be continuous. But taken together, our recommended actions could significantly improve the welfare of native fishes and help to create a novel aquatic ecosystem with many desirable features.

Making the Most of Water for the Environment: A Functional Flows Approach for California’s Rivers

Public Policy Institute of California (PPIC) | August 25th, 2020

In California, water and land management activities have substantially altered river flows and degraded river channels and their floodplains. The result has been a precip

In California, water and land management activities have substantially altered river flows and degraded river channels and their floodplains. The result has been a precipitous decline in native fish populations, including the collapse of valued salmon fisheries, and widespread imperilment of freshwater biodiversity. Environmental flows—flows in rivers and streams necessary to sustain ecosystem health—are essential to reversing these trends. Yet many rivers in California lack environmental flows. And for those rivers with such protections, environmental flows are typically established at static minimum levels, which fail to preserve the natural seasonal and interannual variability of flow that sustains healthy ecosystems. A new approach to managing environmental water is needed. 

Maladaptation to drought: a case report from California, USA

Sustainability Science (Springer) | October 15th, 2015

The interactions between natural water availability and societal water demand and management are complex. In response to gaps in empirical research of the adaptive capaci

The interactions between natural water availability and societal water demand and management are complex. In response to gaps in empirical research of the adaptive capacity of social and environmental systems to climate stresses, we provide an assessment of responses to water scarcity during a multi-year drought in California. In particular, we use Barnett and O’Neill’s (Global Environ Change 20:211–213, 2010) criteria for maladaptation to examine responses in the agricultural and energy sectors to a multi-year (2007–2009) California drought. We conclude that despite evidence in both sectors of resiliency to the impacts of the drought, some of the coping strategies adopted increased the vulnerability of other systems. These other systems include California’s aquatic ecosystems and social groups that rely on those ecosystems for their health or employment; future generations whose resources were drawn down in the near-term, where otherwise those resources would have been available at a later time; and current and future generations who were, or will be, exposed to the effects of increased greenhouse gas emissions. This case study demonstrates that California’s current strategies for dealing with long or severe droughts are less successful than previously thought when short- and long-term impacts are evaluated together. This finding is particularly relevant given projections of more frequent and severe water shortages in the future due to climate change. This study recommends a shift from crisis-driven responses to the development and enactment of long-term mitigation measures that are anticipatory and focus on comprehensive risk reduction.

Managed Environmental Water Use Efficiency: Evidence in Practice

University of California, Berkeley (UC Berkeley) | May 12th, 2006

The California Water Plan Update 2005 first introduced the term Managed Environmental Water Use Efficiency (MEWUE). Specifically, it defines MEWUE as a “mechanism to an

The California Water Plan Update 2005 first introduced the term Managed Environmental Water Use Efficiency (MEWUE). Specifically, it defines MEWUE as a “mechanism to analyze alternative uses of managed environmental water to determine which allocation of a given amount of water will maximize environmental benefits, and as a means to improve decision-making over time.” While MEWUE is a new term, we found several instances where managers maximized environmental benefit from a given amount of water in current practice. This paper demonstrates and analyzes current applications of MEWUE. It then provides the Department of Water Resources with the following recommendations to advance the concept and formally incorporate it into environmental water management: Formalize a MEWUE Policy to clearly state that the goal of MEWUE is a management strategy to maximize environmental benefit and not a water conservation policy. Develop Best Management Practices to increase understanding, provide guidance, and encourage use of MEWUE. Operate a MEWUE Pilot to learn more about the way MEWUE works, understand its strengths, and improve on its weaknesses. Facilitate an Environmental Water Market by applying experience and infrastructure to provide solutions for projects that require more water.

Managing a cyanobacteria harmful algae bloom “hotspot” in the Sacramento – San Joaquin Delta, California

Journal of Environmental Management (Elsevier) | December 10th, 2023

Managing California’s Freshwater Ecosystems: Lessons from the 2012-16 Drought

Public Policy Institute of California (PPIC) | November 16th, 2017

The 2012–16 drought caused unprecedented stress to California’s ecosystems and pushed many native species to the brink of extinction. It also tested the laws, policie

The 2012–16 drought caused unprecedented stress to California’s ecosystems and pushed many native species to the brink of extinction. It also tested the laws, policies, and institutions charged with protecting the environment. Eight case studies on environmental water management during the drought reveal both strengths and weaknesses in federal, state, and local response that can inform how California addresses future droughts. Three areas of reform hold promise for improving ecosystem conditions and reducing conflict: * Improve water accounting. Drought management requires accurate and timely information about water use and availability and about likely environmental response to changes in water supply. But California’s current tracking systems are neither timely nor transparent. To address these gaps, environmental water accounting and ecosystem monitoring systems need an overhaul. * Prepare for drought. With a few significant exceptions, environmental water managers were unprepared for the environmental consequences of an extended drought, and were forced to make ad hoc decisions during a crisis. Developing watershed-level plans that set ecosystem priorities and identify trade-offs would help managers anticipate drought and drive implementation of habitat investments and water allocation. Annual watering plans that guide management under different types of water years would better engage and inform water users. * Develop ecosystem water budgets. Current methods of allocating water to support ecosystem health rely on minimum flow standards that are unevenly enforced and often insufficient during drought. Ecosystem water budgets, which allocate a portion of water to the ecosystem within watersheds, could enable more flexible and effective water management during dry times. Although state and federal agencies have important