Surveillance and Monitoring Program (SAMP) Revised Final Report

Central Valley Salinity Alternatives for Long-Term Sustainability (CV-SALTS) | December 1st, 2016

Among other things, the State Recycled Water Policy (SRWP) requires that development of the Salt and Nitrate Management Plan (SNMP) include the following element (S

Among other things, the State Recycled Water Policy (SRWP) requires that development of the Salt and Nitrate Management Plan (SNMP) include the following element (SRWP Section 6.b.3 (a)): “A basin/sub‐basin wide monitoring plan that includes an appropriate network of monitoring locations. The scale of the basin/subbasin monitoring plan is dependent upon the sitespecific conditions and shall be adequate to provide a reasonable, cost‐effective means of determining whether the concentrations of salt, nutrients, and other constituents of concern as identified in the salt and nutrient plans are consistent with applicable water quality objectives.” Furthermore, “Salts, nutrients, and the constituents identified in paragraph 6(b)(1)(f) shall be monitored. The frequency of monitoring shall be determined in the salt/nutrient management plan and approved by the Regional Water Board pursuant to paragraph 6(b)(2).” This report describes the CV‐SALTS Surveillance and Monitoring Program (SAMP), which was developed to meet the monitoring requirements of the SRWP.

Suspect Screening and Chemical Profile Analysis of Storm-Water Runoff Following 2017 Wildfires in Northern California

Society of Environmental Toxicology and Chemistry (SETAC) | May 5th, 2022

The combustion of structures and household materials as well as firefighting during wildfires lead to releases of potentially hazardous chemicals directly into the landsc

The combustion of structures and household materials as well as firefighting during wildfires lead to releases of potentially hazardous chemicals directly into the landscape. Subsequent storm-water runoff events can transport wildfire-related contaminants to downstream receiving waters, where they may pose water quality concerns. To evaluate the environmental hazards of northern California fires on the types of contaminants in storm water discharging to San Francisco Bay and the coastal marine environment, we analyzed storm water collected after the northern California wildfires (October 2017) using a nontargeted analytical (NTA) approach. Liquid chromatography quadrupole time-of-flight mass spectrometric analysis was completed on storm-water samples (n = 20) collected from Napa County (impacted by the Atlas and Nuns fires), the city of Santa Rosa, and Sonoma County (Nuns and Tubbs fires) during storm events that occurred in November 2017 and January 2018. The NTA approach enabled us to establish profiles of contaminants based on peak intensities and chemical categories found in the storm-water samples and to prioritize significant chemicals within these profiles possibly attributed to the wildfire. The results demonstrated the presence of a wide range of contaminants in the storm water, including surfactants, per- and polyfluoroalkyl substances, and chemicals from consumer and personal care products. Homologs of polyethylene glycol were found to be the major contributor to the contaminants, followed by other widely used surfactants. Nonylphenol ethoxylates, typically used as surfactants, were detected and were much higher in samples collected after Storm Event 1 relative to Storm Event 2. The present study provides a comprehensive approach for examining wildfire-impacted storm-water contamination of related contaminants, of which we found many with potential ecological risk.

Suspended Sediment Flux in the San Francisco Estuary: Part I—Changes in the Vertical Distribution of Suspended Sediment and Bias in Estuarine Sediment Flux Measurements

Estuaries and Coasts (Springer) | April 22nd, 2020

In this study, we investigate how changes in the vertical distribution of suspended sediment affect continuous suspended sediment flux measurements at a location in the S

In this study, we investigate how changes in the vertical distribution of suspended sediment affect continuous suspended sediment flux measurements at a location in the San Francisco Estuary. Current methods for measuring continuous suspended sediment flux estimates relate continuous estimates of suspended-sediment concentration (SSC) measured at-a-point (SSCpt) to discrete cross-section measurements of depth-averaged, velocity-weighted SSC (SSCxs). Regressions that compute SSCxs from continuous estimates of SSCpt require that the slope between SSCpt and SSCxs, controlled by the vertical distribution of SSC, is fixed. However, in tidal systems with suspended cohesive sediment, factors that control the vertical SSC profile—vertical turbulent mixing and downward settling of suspended sediment mediated by flocculation of cohesive sediment—constantly vary through each tide and may exhibit systematic differences between flood and ebb tides (tidal asymmetries in water velocity or particle size). We account for changes in the vertical SSC profile on estimates of SSCxs using time series of the Rouse number of the Rouse-Vanoni-Ippen equation combined with optical turbidity measurements, a surrogate for SSCpt, to predict SSCxs from 2009 to 2011 and 2013. Time series of the Rouse number were estimated by fitting the Rouse-Vanoni-Ippen equation to SSC estimated from optical-turbidity measurements taken at two elevations in the water column. When accounting for changes in the vertical SSC profile, changes in not only the magnitude but also the direction of cumulative sediment-flux measurements were observed. For example, at a mid-depth sensor, sediment flux estimates changed from − 319 kt (± 65 kt, negative indicating net seaward transport) to 482 kt (± 140 kt, positive indicating net landward transport) for 2009–2011 and from − 388 kt (± 140 kt) to 1869 kt (± 406 kt) for 2013–2016. At the study location, estimation of SSCxs solely from SSCpt resulted in sediment flux values that were underestimates on flood tides and overestimates on ebb tides. This asymmetry is driven by covariance between water velocity and particle settling velocity (Ws) with larger Ws on flood compared to ebb tides. Results of this study indicate that suspended-sediment-flux measurements estimated from point estimates of SSC may be biased if systematic changes in the vertical distribution of SSC are unaccounted for.

Sustainability of irrigated agriculture in the San Joaquin Valley, California

National Academy of Sciences (NAS) | October 25th, 2005

The sustainability of irrigated agriculture in many arid and semiarid areas of the world is at risk because of a combination of several interrelated factors, including

The sustainability of irrigated agriculture in many arid and semiarid areas of the world is at risk because of a combination of several interrelated factors, including lack of fresh water, lack of drainage, the presence of high water tables, and salinization of soil and groundwater resources. Nowhere in the United States are these issues more apparent than in the San Joaquin Valley of California. A solid understanding of salinization processes at regional spatial and decadal time scales is required to evaluate the sustainability of irrigated agriculture. A hydro-salinity model was developed to integrate subsurface hydrology with reactive salt transport for a 1,400-km2 study area in the San Joaquin Valley. The model was used to reconstruct historical changes in salt storage by irrigated agriculture over the past 60 years. We show that patterns in soil and groundwater salinity were caused by spatial variations in soil hydrology, the change from local groundwater to snowmelt water as the main irrigation water supply, and by occasional droughts. Gypsum dissolution was a critical component of the regional salt balance. Although results show that the total salt input and output were about equal for the past 20 years, the model also predicts salinization of the deeper aquifers, thereby questioning the sustainability of irrigated agriculture.

Sustainable Cotton Project

San Francisco Estuary Institute (SFEI) | November 19th, 2009

Contamination from pesticide application to row crops is a major water quality issue in California. Cotton receives three to five times greater application of pesticide p

Contamination from pesticide application to row crops is a major water quality issue in California. Cotton receives three to five times greater application of pesticide per acre than other row crops (USGS 2008). This Project included outreach, education, and technical support for growers to test alternatives to synthetic pesticides and inorganic fertilizers. In addition, water quality monitoring of cotton field runoff in the Central Valley of California was conducted during the 2007 and 2008 growing seasons. The goal of the study was to evaluate differences in pesticide and nutrient loads to receiving water bodies comparing biological and conventional growing practices. The types and concentrations of pesticides in the sampled tail water were similar for biologically and conventionally grown cotton. Average pesticide concentrations in water and estimated loads for diuron, glyphosate, chlorpyrifos, and prometryn were not statistically significantly different with BMP implementations at the biological sites due to sample size limitations. However, there was a trend toward lower pesticide concentrations for diuron and prometryn at the biological sites. Concentrations for most nutrient forms and loads were also generally similar within the two site types when compared to flow passing the site at the point of sampling. Nitrate and nitrite loads, however, were reduced at the biological fields by more than 70% compared to the conventional sites. Additionally, limited bioassessment samples showed slightly greater numbers of individuals and numbers of species collected at the biological sites.

Sustainable L.A. Grand Challenge Environmental Report Card for Los Angeles County: Water 2019

University of California, Los Angeles (UCLA) | October 22nd, 2019

The Sustainable LA Grand Challenge (SLA GC) Environmental Report Card (ERC) for Los Angeles County (L.A. County) is the only comprehensive environmental report card for

The Sustainable LA Grand Challenge (SLA GC) Environmental Report Card (ERC) for Los Angeles County (L.A. County) is the only comprehensive environmental report card for a megacity in the world. This 2019 ERC on Water provides an in-depth look at the region’s efforts in moving toward a more resilient local water supply, which requires maximizing high quality local water supplies, improving water conveyance and treatment infrastructure, reducing water consumption, and implementing innovative technology and policy solutions. Twenty indicators were assessed across eight categories. Many of these indicators are new areas of assessment for the ERC and will provide a more comprehensive picture of current conditions compared to the 2015 ERC that last assessed L.A. County’s water. Grades were assigned in each category based on compliance with environmental laws or numeric standards where applicable, on our best professional judgment, and on historical improvements and context. This year’s grades range from D/ Incomplete to B+, and although there has been great progress in some areas, others still require significant improvement to raise the county’s C+ average.

Sutter Bypass East Levee Project Initial Study/Proposed Mitigated Negative Declaration

California Department of Water Resources (DWR) | July 10th, 2025

Sycamore Alluvial Woodland Planting Guide

San Francisco Estuary Institute (SFEI) | August 1st, 2018

This memo builds on recent field-based studies which examined the relative distribution, health, and regeneration patterns of two major stands of sycamore alluvial woodla

This memo builds on recent field-based studies which examined the relative distribution, health, and regeneration patterns of two major stands of sycamore alluvial woodland (SAW) in Santa Clara County. Given that the acquisition, restoration, and improved management of SAW is mandated as part of the Santa Clara Valley Habitat Plan (VHP), it is increasingly critical to understand how, when, and where sycamores establish, which is critical for successful restoration design and planting success. This memo is meant to summarize recent studies on habitat requirements of the SAW habitat type, and present a planting plan and monitoring framework for restoring SAW habitat at two sites in Santa Clara County. As the science and restoration of SAW is an ongoing topic of interest, we also suggest possible subsequent studies needed to further sycamore restoration goals. 

Synergies between climate anomalies and hydrological modifications facilitate estuarine biotic invasions

Ecology Letters (Wiley) | June 6th, 2011

Environmental perturbation, climate change and international commerce are important drivers for biological invasions. Climate anomalies can further increase levels of hab

Environmental perturbation, climate change and international commerce are important drivers for biological invasions. Climate anomalies can further increase levels of habitat disturbance and act synergistically to elevate invasion risk. Herein, we use a historical data set from the upper San Francisco Estuary to provide the first empirical evidence for facilitation of invasions by climate extremes. Invasive zooplankton species did not become established in this estuary until the 1970s when increasing propagule pressure from Asia coincided with extended drought periods. Hydrological management exacerbated the effects of post‐1960 droughts and reduced freshwater inflow even further, increasing drought severity and allowing unusually extreme salinity intrusions. Native zooplankton experienced unprecedented conditions of high salinity and intensified benthic grazing, and life history attributes of invasive zooplankton were advantageous enough during droughts to outcompete native species and colonise the system. Extreme climatic events can therefore act synergistically with environmental perturbation to facilitate the establishment of invasive species.

Synthesis of data and studies relating to Delta Smelt biology in the San Francisco Estuary, emphasizing water year 2017

Interagency Ecological Program (IEP) | November 1st, 2021

In the San Francisco Estuary (SFE), the effects of freshwater flow on the aquatic ecosystem have been studied extensively over the years and remains a contentious managem

In the San Francisco Estuary (SFE), the effects of freshwater flow on the aquatic ecosystem have been studied extensively over the years and remains a contentious management issue. It is especially contentious with regards to the Delta Smelt (Hypomesus transpacificus), a species endemic to the SFE that has been listed as threatened under the Federal Endangered Species Act and endangered by the State of California. Early studies of Delta Smelt distribution within the SFE suggested that Delta Smelt habitat is determined largely by freshwater flow; however, the exact mechanisms and processes producing such benefits remained unclear. In the summer of 2017, the Flow Alteration Management, Analysis, and Synthesis Team (FLOAT-MAST) was established to analyze, synthesize, and summarize the data collected from the various flow-related monitoring and special studies occurring in 2017(see Table Intro 4). This report will focus on the 2017 summer-fall status of Delta Smelt and its habitat following a record wet year. There has been a long-term decline in the abundance of Delta Smelt associated with a decline in other pelagic fishes. Investigators concluded that the decline has likely been caused by the interactive effects of several causes, including changes in both physical and biotic habitats, many of which are tied to amount and timing of freshwater flow. For this report, we formulated a number of basic predictions about the likely effects of high flows in 2017 on Delta Smelt and their habitat (Table 3). We use a qualitative weight of evidence approach to evaluate whether these predictions were supported by available data. Data sources included a variety of long-term monitoring surveys conducted by Interagency Ecological Program (IEP) agencies, as well as model outputs. Delta Smelt population, health, and life history metrics rarely responded as predicted. Water temperature appears to have a stronger effect on Delta Smelt growth rate and some metrics of life history diversity than outflow or X2 position. Other life history diversity attributes varied but did not appear to be driven by outflow or temperature. Health status was difficult to interpret. Low prevalence of lesions and improved nutritional condition during the drought was contradicted by declining overall population levels. Because of the sparse catches of Delta Smelt in the post-POD years, we consider the data insufficient to reach firm conclusions about the predictions concerning range and distribution of Delta Smelt, especially in the fall. The prediction of high survival was not supported. The 2017 Delta Smelt year class began with poor recruitment in spring of 2017 and below average survival for spring to summer and summer to fall. Thus, low production and low survival led to low abundance of all life stages. During the fall to winter period survival improved, yet the resulting adults were low in number. Foraging success of the fish captured, as measured by stomach fullness, was high for juveniles and adults in 2017 relative to recent years associated with the higher densities of common zooplankton prey that occurred in 2017.