Agricultural Losses from Salinity in California’s Sacramento-San Joaquin Delta

University of California, Davis (UC Davis) | April 5th, 2014

Sea level rise, large-scale flooding, and new conveyance arrangements for water exports may increase future water salinity for local agricultural production in California

Sea level rise, large-scale flooding, and new conveyance arrangements for water exports may increase future water salinity for local agricultural production in California’s Sacramento–San Joaquin Delta. Increasing salinity in crop root zones often decreases crop yields and crop revenues. Salinity effects are nonlinear and vary with crop choice and other factors including drainage and residence time of irrigation water. Here, we explore changes in agricultural production in the Delta under various combinations of water management, large-scale flooding, and future sea level rise. Water management alternatives include through-Delta water exports (current conditions), dual conveyance (through-Delta and a 6,700 Mm3 yr?1 [or 7500 cfs] capacity peripheral canal or tunnel) and the flooding of five western islands with and without peripheral exports. We employ results from previous hydrodynamic simulations of likely changes in salinity for irrigation water at points in the Delta. We connect these irrigation water salinity values into a detailed agro-economic model of Delta agriculture to estimate local crop yield and farm revenue losses. Previous hydrodynamic modeling work shows that sea level rise is likely to increase salinity from 4% to 130% in this century, depending on the increase in sea level and location. Changes in water management under dual conveyance increase salinity mostly in the western Delta, and to a lesser extent in the north, where current salinity levels are now quite low. Because locations likely to experience the largest salinity increases already have a lower-value crop mix, the worst-case losses are less than 1% of total Delta crop revenues. This result also holds for salinity increases from permanent flooding of western islands that serve as a salinity barrier. Our results suggest that salinity increases could have much smaller economic effects on Delta farming than other likely changes in the Delta such as the retirement of agricultural lands after large-scale flooding and habitat development. Integrating hydrodynamic, water salinity, and economic models can provide insights into controversial management issues.

Alamitos Barrier Project: Annual Report on the Control of Seawater Intrusion 2016-2017

Los Angeles County Department of Public Works (LACDPW) | June 30th, 2017

The Alamitos Barrier Project (ABP) was designed and constructed to protect the groundwater supplies of the Central/Orange County Basin of the Coastal Plain

The Alamitos Barrier Project (ABP) was designed and constructed to protect the groundwater supplies of the Central/Orange County Basin of the Coastal Plain from the intrusion of seawater through the Alamitos Gap area. The project facilities are located near the Los Angeles-Orange County border about two miles inland from the terminus of the San Gabriel River. The original facilities included injection wells to form a freshwater pressure ridge and extraction wells to form a saltwater trough. The freshwater pressure ridge has proven to be historically effective, whereas the saltwater trough has not. As a result, the extraction wells are currently not in operation. A map showing the supply pipeline, injection wells, extraction wells, and observation wells is shown on page A-12.1. The County of Los Angeles Department of Public Works (Public Works) operates and maintains the ABP and its associated facilities under the direction and approval of the Joint Management Committee (JMC), acting on behalf of the Los Angeles County Flood Control District (LACFCD) and the Orange County Water District (OCWD). This report summarizes design and construction issues, operation and maintenance activities, hydrogeologic effects, chloride concentrations, and project costs for Fiscal Year (FY) 2016-17 (i.e., July 1, 2016 through June 30, 2017).

An overview of multi-dimensional models of the Sacramento-San Joaquin Delta

University of California, Davis (UC Davis) | December 1st, 2016

Over the past fifteen years, the development and application of models in San Francisco Bay and the Sacramento-San Joaquin Delta has transformed our ability to analyze an

Over the past fifteen years, the development and application of models in San Francisco Bay and the Sacramento-San Joaquin Delta has transformed our ability to analyze and understand the underlying physics of the system. Initial applications of three-dimensional models focused primarily on salt intrusion, and provided a valuable resource for investigating how sea level rise and levee failures in the Delta could influence water quality in the Delta in the future. However, multi-dimensional models have also provided significant insights into some of the fundamental biological relationships that have shaped our thinking about the system by exploring the relationship between X2, flow, fish abundance, and the low salinity zone. Through modeling, it has been possible to move beyond salinity to understand how large-scale changes to the system are likely to affect sediment dynamics, and to assess the potential effects on species that rely on turbidity for habitat. Lastly, the coupling of multi-dimensional hydrodynamic models with particle tracking models has led to advances in our thinking about residence time, the retention of food organisms, the effect of south Delta exports on larval entrainment, and the pathways and behaviors of salmonids that travel through the Delta. This chapter provides an overview of these recent advances and how they have increased our understanding of the distribution and movement of fish and food organisms. The applications presented serve as a guide to the current state of the science of Delta modeling and provide examples of how we can use multidimensional models to predict how future Delta conditions will affect both fish and water supply.  

Annual Report on the Colorado River Basin Salinity Control Program 2020

Colorado River Basin Salinity Control Advisory Council (CRBSCAC) | December 31st, 2020

Aquatic Life Study Final Report

San Joaquin Valley Drainage Authority | January 6th, 2016

Central Valley Salinity Alternatives for Long Term Sustainability (CV‐SALTS) is developing a comprehensive regulatory and programmatic approach to the management of sa

Central Valley Salinity Alternatives for Long Term Sustainability (CV‐SALTS) is developing a comprehensive regulatory and programmatic approach to the management of salt and nitrate in the Central Valley that is consistent with the State Recycled Water Policy (SRWP). This work is being carried out collaboratively with the Central Valley Regional Water Quality Control Board (Central Valley Water Board), the State Water Resources Control Board (State Water Board), the Central Valley Salinity Coalition and Stakeholders. As stated in the CV‐SALTS Strategy and Framework document, the strategy to fulfill the requirements of the SRWP is to adopt a Central Valley Salt and Nitrate Management Plan (SNMP) and revise the Basin Plans applicable to the Central Valley to facilitate implementation of the SNMP. This effort includes a technical review of the state of science with regards to the establishment of appropriate water quality objectives (WQO) to protect surface water beneficial uses. This Aquatic Life Study was undertaken to evaluate the technical basis for the establishment of salinity‐related WQOs to protect aquatic life in the Central Valley. The findings of this analysis will be considered by CV‐SALTS during development and adoption of the SNMP.

Assessing potential effects of oil and gas development activities on groundwater quality near and overlying the Elk Hills and North Coles Levee Oil Fields, San Joaquin Valley, California

PLOS | August 5th, 2024

At the Great Salt Lake, record salinity and low water imperils millions of birds

American Association for the Advancement of Science (AAAS) | September 9th, 2022

Utah’s Great Salt Lake is smaller and saltier than at any time in recorded history. In July, the U.S. Geological Survey (USGS) reported that the world’s third-largest

Utah’s Great Salt Lake is smaller and saltier than at any time in recorded history. In July, the U.S. Geological Survey (USGS) reported that the world’s third-largest saline lake had dropped to the lowest level ever documented. And last week researchers measured the highest salt concentrations ever seen in the lake’s southern arm, a key bird habitat. Salinity has climbed to 18%, exceeding a threshold at which essential microorganisms begin to die. The trends, driven by drought and water diversion, have scientists warning that a critical feeding ground for millions of migrating birds is at risk of collapse. “We’re into uncharted waters,” says biochemist Bonnie Baxter of Westminster College, who has been documenting the lake’s alarming changes. “One week the birds are gone from a spot we usually see them. The next week we see dead flies along the shore. And each week we have to walk further to reach the water.” After years of inaction, the prospect of a dying lake, plus the risk of harmful dust blowing from the dry lakebed, is galvanizing policymakers to find ways to restore water to the shrinking lake.

Base of fresh water, groundwater salinity, and well distribution across California

National Academy of Sciences (NAS) | December 9th, 2020

The depth at which groundwaters transition from fresh to more saline—the “base of fresh water”—is frequently used to determine the stringency and types of measure

The depth at which groundwaters transition from fresh to more saline—the “base of fresh water”—is frequently used to determine the stringency and types of measures put in place to manage groundwater and protect it from contamination. Therefore, it is important to understand salinity distributions and compare defined bases of fresh water with salinity distributions and groundwater well depths. Here we analyze two distinct datasets: 1) a large set of total dissolved solids concentration (TDS) measurements (n = 216,754) and 2) groundwater well locations and depths (n = 399,454) across California. We find that 19 to 56% of the groundwater TDS measurements made at depths deeper than defined bases of fresh water pump fresh groundwater (TDS < 2,000 mg/L). Because fresh groundwater is found at depths deeper than the base of fresh water, current policies informed by base of fresh water assessments may not be managing and protecting large volumes of deep fresh groundwater. Furthermore, we find that nearly 4% of existing groundwater wells penetrate defined bases of fresh water, and nearly 16% of wells overlie it by no more than 100 m, evidencing widespread encroachment on the base of fresh water by groundwater users. Consequently, our analysis suggests that groundwater sustainability in California may be poorly safeguarded in some places and that the base-of-fresh-water concept needs to be reconsidered as a means to define and manage groundwater.

Basis of Design Report - Species Conservation Habitat

California Department of Water Resources (DWR) | April 14th, 2014

The Species Conservation Habitat (SCH) project provides shallow water habitat to support fish and wildlife dependent upon the Salton Sea that is being lost due to

The Species Conservation Habitat (SCH) project provides shallow water habitat to support fish and wildlife dependent upon the Salton Sea that is being lost due to salinity increases and the declining water surface elevation. The Project is located at the southern end of the Salton Sea (Sea) in Imperial County, California. Through the environmental review process, a Preferred Alternative was selected that encompasses 3,770 acres on both sides of the New River. The Project would include water supplies, berms to contain the water, and various other support facilities. The early start construction of the project is to develop habitat consistent with the EIS/EIR preferred alternative that is scaled down to fit the level of implementation funding currently available. The design described in this report is for early start project (Project) of the SCH and is limited to the 640 acres located within the bay on the east side of the New River. This report provides a summary of the primary design features and considerations associated with the habitat development. A more detailed discussion of the background, purpose, goals, design elements, Preferred Alternative, and Project impacts can be found in the 2011 draft EIS/EIR.  

Bay Delta Plan Phase 2 Workshop Summary Report

California State Water Resources Control Board (SWRCB) | January 1st, 2013

The California State Water Resources Control Board (Board) is tasked with updating the 2006 Water Quality Control Plan for the Bay-Delta Estuary (Bay-Delta Plan). The Boa

The California State Water Resources Control Board (Board) is tasked with updating the 2006 Water Quality Control Plan for the Bay-Delta Estuary (Bay-Delta Plan). The Board planning activities for this process have four phases. Phase 1 focused on San Joaquin River flow requirements and southern Delta water quality objectives. The current phase (Phase 2) focuses on fish and wildlife beneficial uses. Phase 3 will focus on modifications to water rights and Phase 4 will focus on the development and implementation of flow requirements for priority Delta tributaries. Phase 2 workshops were held to conduct discussions and generate information regarding the scientific and technical basis for considering potential changes to the Bay-Delta Plan. The workshops were informal; the Board did not take any official action and there was no sworn testimony. Information provided during the workshops will augment information developed through earlier reviews and will inform the Board members and staff on what, if any, changes should be made to the Bay-Delta Plan. Three workshops were held. Full workshop agendas are provided in Appendix A. 1. Ecosystem Changes and the Low Salinity Zone, September 5–6, 2012 – including the effects of the low salinity zone on various estuarine species, the interaction of salinity with non-flow related factors, and the identification of modeling or other tools that can be used to measure and reasonably protect estuarine habitat. 2. Bay-Delta Fishery Resources, October 1–2, 2012 – including flow, cold water pool, habitat, and water project operational constraints needed to reasonably protect Central Valley steelhead, Sacramento River winter-run, Central Valley late fall–run Chinook salmon, and pelagic species (including Delta smelt and longfin smelt); and the interaction of these issues with non-flow related factors. 3. Analytical Tools for Evaluating the Water Supply, Hydrodynamic, and Hydropower Effects of the Bay-Delta Plan, November 13–14, 2012 – including the CalSim II water supply model, DSM2 and RMA2 hydrodynamic models, Plexus hydropower model, and others as  applicable, together with results from applying these models to various scenarios.