San Joaquin River

State of the Estuary 2019 Update

San Francisco Estuary Partnership (SFEP) | October 22nd, 2019

The San Francisco Estuary is a large and diverse system. Hundreds of miles of coastline stretch from the wide valleys of the Sacramento and San Joaquin Rivers to the stee

The San Francisco Estuary is a large and diverse system. Hundreds of miles of coastline stretch from the wide valleys of the Sacramento and San Joaquin Rivers to the steep headlands of the Golden Gate, with vast agricultural fields in the Delta and urbanized shorelines in Silicon Valley and many of the region’s cities. The complexity and scale of this system means it can take years to detect and assess changes. This interim State of the Estuary Report checks in on a few indicators of health and explores where the assessment should head over time. In the four years since the 2015 State of the Estuary Report, two issues have emerged as critical to how we assess the health of the estuarine ecosystem at the heart of the Bay Area and the Delta. First, the health of the Estuary and of the people who live near it and depend on it are inextricably linked. We need a healthy Bay and Delta to protect our shorelines from sea level rise, help keep our waters clean, provide food and habitat for fish and wildlife, and give people a place to enjoy nature. We also need to think more about human communities as we assess the health of natural communities. This focus means addressing environmental injustices that are deeply embedded in our culture and patterns of development. The second critical issue to emerge is the need for a greater focus on landscape resilience—how well the Bay and the Delta are equipped to respond to change—so that people and wildlife can thrive as climate change progresses. Taking these two ideas together, this report focuses on the nexus of social and ecological resilience as we look toward the future. The first section of the Report updates indicators of ecological health that span the entire extent of the San Francisco Estuary (Bay and Delta). Recent data show continued progress along the trajectories of the past decade. Tidal marsh restoration is proceeding at a brisk pace in the Bay and gaining traction in the Delta, while urban water conservation continues to meet mandated benchmarks, even during the drought. On the other hand, flows through the Estuary and across its floodplains continue to be well below levels that could increase and restore ecosystem health. Freshwater flows are a lynchpin of ecosystem processes that sustain physical habitats, fuel the food web, and regulate water quality. Creative approaches to using and re-using fresh water for environmental purposes are needed. Long-term trend analysis shows that fish communities in the Bay are declining. This analysis scores an index of 10 attributes of a healthy fish community. The index focuses on fish in offshore areas, and may not capture benefits to fish from near-shore wetland restoration projects. Despite this slow decline, fish communities in the saltier parts of the Estuary remain in good condition, while those in the brackish and freshwater areas are in poor condition. The next section of the report discusses three emerging indicators of Estuary health, offering options for how to assess resilience in future reports. Here, for the first time, the resilience of the Estuary’s shores is evaluated through the lens of subsidence and nature-based features. Elevation relative to sea level is a basic currency that must be tracked as the Pacific Ocean rises into the Estuary. The potential for the Estuary shore to be resilient to climate change and continue to provide benefits to people is related to how much of the shore zone is nature-based. The final emerging indicator, urban green space, is a first attempt to assess how access to nature is distributed across more and less advantaged communities. More work is needed to finalize all these emerging indicators before they can be included in any future quantitative assessment of the State of the Estuary. These emerging and updated indicators will help focus efforts to restore the Estuary’s health. In addition to continuing the successful aspects of restoration and conservation that this report describes, we need more investment in creative ways to use and restore flows for environmental health, to expand and build resilient shorelines and to weave considerations of social equity more strongly into efforts to improve environmental health. - J. Letitia Grenier, Lead Scientist

State of the Estuary, October 2013

San Francisco Estuary Partnership (SFEP) | October 31st, 2013

State of the Salmonids: Status of California’s Emblematic Fishes 2017

University of California, Davis (UC Davis) | August 1st, 2017

California has, or had, 32 distinct kinds of salmonid fishes. They are either endemic to California or at the southern end of their ranges. Most are in serious decline:

California has, or had, 32 distinct kinds of salmonid fishes. They are either endemic to California or at the southern end of their ranges. Most are in serious decline: 45% and 74% of all salmonids will likely become extirpated from California in the next 50 and 100 years, respectively, if present trends continue. Our results suggest that California will lose more than half (52%) of its native anadromous salmonids and nearly a third (30%) of its inland taxa in just 50 years under current conditions. Climate change is a major overarching threat driving population declines throughout California and strongly affects the status of 84% of all salmonids reviewed. In addition, dams, agricultural operations, estuary alteration, non-native species, production hatcheries, and myriad other human-induced threats have contributed to declines. 81% of salmonids in California are now worse off than they were in 2007, when the previous version of this report was prepared. The changes in species status are the result of the 2012-2016 historic drought, improved data collection and review, and an improved understanding of climate change impacts. Returning these iconic species to sustainable levels requires access to productive and diverse habitats which promote the full range of life history diversity necessary to weather change. We recommend (i) protecting and investing in fully functioning watersheds such as the Smith River and Blue Creek, (ii) protecting and restoring source waters such as Sierra meadow systems, groundwater, and springs so that the impacts of climate change are reduced, (iii) restoring function and access to once productive and diverse habitats such as Central Valley floodplains, coastal lagoons, and estuaries, (iv) adopting reconciliation ecology as a basis for management in human dominated landscapes, (v) improving habitat connectivity and passage to historical spawning and rearing habitat, and (vi) improving salmonid genetic management throughout California.

State Plan of Flood Control Descriptive Document (2010)

California Department of Water Resources (DWR) | January 15th, 2010

This report provides an inventory and description of the existing flood control works (facilities), lands, programs, plans, conditions, and mode of operations and mainten

This report provides an inventory and description of the existing flood control works (facilities), lands, programs, plans, conditions, and mode of operations and maintenance (O&M) for the State-Federal flood protection system in the Central Valley of California. This flood protection system is composed of federally authorized project levees and related facilities for which the State has provided assurances1 of cooperation to the federal government. These State-provided assurances are an important distinction for what constitutes the State-federal flood protection system since other flood protection facilities in the Central Valley are not covered by State assurances and are not part of the State-federal system. Collectively, the facilities, lands, programs, conditions, and mode of O&M for the State-Federal flood protection system in the Central Valley are referred to as the State Plan of Flood Control (SPFC). This SPFC Descriptive Document is the first time that an inventory of the SPFC has been compiled or referenced in a single document. Until now, much of the information on the SPFC has been individually maintained for each of the many flood protection projects that constitute State-federal flood protection along the Sacramento and San Joaquin rivers and tributaries. For example, much of the information contained in sections of this report originates in 118 individual project (unit-specific) O&M manuals. The O&M manuals provide key information about each project and how it should be operated and maintained (see reference digital versatile disc (DVD) at the back of this report). In addition, since the individual projects for the system were implemented over almost a century, some information may have been lost or never obtained. In those cases, gaps exist in the information presented in this report and further research is required. It is important to note that the SPFC is only a portion of the larger system that provides flood protection for the Central Valley. The SPFC relies on many other features that do not meet the definition of the SPFC. For example, non-SPFC reservoirs provide substantial regulation of flows to levels that SPFC facilities can mostly handle. Private levees, locally operated drainage systems, and other facilities work in conjunction with SPFC facilities. Management practices such as emergency response, floodplain management, and other practices are part of the overall flood protection system. All parts of the system, including the SPFC, depend on other parts of the system to operate as a unit. This report is structured as a reference document for the SPFC. It includes narrative descriptions, tables, and figures, especially maps, to help the reader find information for this complex flood management system. Some sections include summary sections for readers who only need an overview of the subject. RELATED DOCUMENT: State Plan of Flood Control Descriptive Document 2016 Update

State Plan of Flood Control Descriptive Document 2016 Update

California Department of Water Resources (DWR) | December 14th, 2016

The November 2016 State Plan of Flood Control (SPFC) Descriptive Document Update (2016 Update) is intended to serve as a reference for flood management planners and opera

The November 2016 State Plan of Flood Control (SPFC) Descriptive Document Update (2016 Update) is intended to serve as a reference for flood management planners and operators at the local, State, and federal levels. It is not a stand-alone document; rather, it works in conjunction with the November 2010 SPFC Descriptive Document, builds upon information presented in the original report, and documents changes to the SPFC that have occurred between November 2010 and July 2016. The 2016 Update documents the inventory of flood control projects and works (facilities), lands, programs, plans, conditions, and mode of operations and maintenance for the State-federal flood management system in the Sacramento River and San Joaquin River watersheds of California, as well as informs the 2017 Central Valley Flood Protection Plan Update. In 2006 and 2007, California voters approved the Disaster Preparedness and Flood Prevention Bond Act of 2006 and the Central Valley Flood Protection Act of 2008 respectively. These acts defined the Sacramento River and San Joaquin River federal-State flood control projects as the SPFC, and required DWR to develop, and the Central Valley Flood Protection Board to adopt, a Central Valley Flood Protection Plan. The Central Valley Flood Protection Plan is broader than the SPFC, affecting the entire watersheds of the Sacramento and San Joaquin valleys. A complex system of dams and reservoirs, levees, weirs, bypasses, and other features constructed piecemeal over the last 100 years protects urban and rural areas against most flooding. This system has prevented billions of dollars in damage in its lifetime. A portion of this complex flood protection system includes State and federally authorized projects for which the Central Valley Flood Protection Board or DWR has provided assurances of cooperation to the federal government, known as the SPFC. These statutory authorizations include provisions regarding responsibility for operation and maintenance of the flood control facilities. The California Legislature has authorized funding for numerous flood control projects throughout the Sacramento and San Joaquin River watersheds. As the SPFC evolves, updates to the SPFC Descriptive Document will be useful in determining funding eligibility for funding for facility improvements. RELATED DOCUMENT:  State Plan of Flood Control (2010)

State Plan of Flood Control Descriptive Document Update (2017)

California Department of Water Resources (DWR) | August 10th, 2017

The State Plan of Flood Control (SPFC) Descriptive Document, November 2010, provided the first inventory and description of the flood management projects and features (fa

The State Plan of Flood Control (SPFC) Descriptive Document, November 2010, provided the first inventory and description of the flood management projects and features (facilities), lands, programs, plans, conditions, and mode of operations and maintenance for the State-federal flood management system in the Sacramento River and San Joaquin River watersheds of California. The 2010 Descriptive Document was prepared in response to Proposition 1E (Disaster Preparedness and Flood Prevention Act of 2006), which required that information on the SPFC “…. be updated and compiled into a single document entitled, ‘The State Plan of Flood Control.’” Similar information is required to be a part of the CVFPP pursuant to the Central Valley Flood Protection Act of 2008. Legislation relevant to this document can be found in Appendix A. While much of the information contained in the 2010 Descriptive Document has not changed, it was anticipated that future updates would be necessary to keep the SPFC description current as new or ongoing projects were completed. Also, updates to the SPFC would be appropriate to reflect any additional or new documentation discovered on existing projects that would meet the requirements of the SPFC. The purpose of this update to the 2010 Descriptive Document is to describe changes that have occurred to the SPFC since the 2010 Descriptive Document due to project implementation and other related changes. This document also supports the data and analysis of the 2017 Central Valley Flood Protection Plan Update (CVFPP) and the 2017 Flood System Status Report (FSSR). The SPFC Descriptive Document Update (Update) is structured as a reference document and should be used in conjunction with the 2010 Descriptive Document to represent the SPFC as of June 30, 2016. It includes narrative descriptions, tables, figures, web links, and maps, to help the reader find information for this complex flood management system. Figure G-1 shows a geographic overview of the SPFC. Consistent with the 2010 Descriptive Document level of detail, this report describes changes to the major elements of the SPFC, but only to a level of detail necessary to orient the reader to the SPFC and reference where more information can be found. For example, a given reach of levee may have many encroachments such as pipes that cross under, through, or over the levee. In addition, a given river reach may have associated bridges, stream gages, drainage facilities, etc. No attempt was made to itemize all these encroachments and associated facilities in this Update. Because of the volume of available information, a reference digital versatile disc (DVD) was provided in the pocket at the end of the 2010 Descriptive Document. The DVD provided more details than could be contained in the text of the 2010 report. The contents of the 2010 Reference DVD, excluding the SPFC Mapbook and O&M manual database, is located on the 2012 CVFPP webpage at http://www.water.ca.gov/cvfmp/2012-cvfpp-docs.cfm.

State Water Project Adaptation Strategy

California Department of Water Resources (DWR) | August 20th, 2025

This State Water Project Adaptation Strategy, developed by the California Department of Water Resources (DWR), presents a forward-looking roadmap for adapting the State W

This State Water Project Adaptation Strategy, developed by the California Department of Water Resources (DWR), presents a forward-looking roadmap for adapting the State Water Project (SWP) to the challenges posed by a changing climate. The SWP is one of the largest State-built water and power systems in the United States, conveying water through over 700 miles of canal. Starting in northern California and running through the Central Valley and Southern California, it supplies water to 27 million residents, 750,000 acres of farmland, and supports over $2.3 trillion in economic activity. With climate change accelerating the frequency and intensity of droughts, floods, wildfires, and sea level rise, the SWP must be modernized to ensure long-term sustainability, reliability, and affordability in water distribution.

State Water Project Allocations, Historical Table A, Water Years 1996-2022

California Department of Water Resources (DWR) | August 30th, 2022

State Water Project Allocations, Historical Table A, Water Years 1996-2023

California Department of Water Resources (DWR) | December 1st, 2022

State Water Project and Central Valley Project Drought Contingency Plan May 1, 2021 – September 30, 2021

California Department of Water Resources (DWR) | May 28th, 2021

This Drought Contingency Plan (Drought Plan) is prepared by the California Department of Water Resources (DWR) and the U.S. Bureau of Reclamation (Reclamation) in an effo

This Drought Contingency Plan (Drought Plan) is prepared by the California Department of Water Resources (DWR) and the U.S. Bureau of Reclamation (Reclamation) in an effort to provide updated information about areas of potential concern given the current dry hydrology of 2021. DWR and Reclamation operate the State Water Project (SWP) and the Central Valley Project (CVP), respectively, to the 2020 Record of Decision (ROD) as analyzed in the 2019 U.S. Fish and Wildlife Service (USFWS) Biological Opinion and 2019 National Marine Fisheries Service (NMFS) Biological Opinion on the Coordinated Long-Term Operation of the Central Valley Project and the State Water Project (Collectively the 2019 Biological Opinions), and DWR also operates the SWP to the 2020 California Department of Fish and Wildlife (CDFW) Incidental Take Permit (ITP). This updated Drought Plan will be submitted by DWR to CDFW in response to Condition 8.21 of CDFW’s ITP. Concurrently, this plan will be shared with the Water Operations Management Team (WOMT) which includes representatives from DWR, Reclamation, USFWS, NMFS, CDFW, and the State Water Resources Control Board (SWRCB) (collectively referred to as Agencies). This report was first drafted in February and subsequently updated in March, April, and May 2021.