San Joaquin River

Putting People over Fish: Stopping Radical Environmentalism to Provide Water to Southern California

The White House | January 20th, 2025

Puzzling Over the Shallows

CALFED | December 1st, 2001

Quality of Groundwater Used for Domestic Supply in the Modesto, Turlock, and Merced Subbasins of the San Joaquin Valley, California

U.S. Geological Survey (USGS) | January 6th, 2023

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domes

More than 2 million Californians rely on groundwater from privately owned domestic wells for drinking-water supply. This report summarizes a water-quality survey of domestic and small-system drinking-water supply wells in the Modesto, Turlock, and Merced subbasins of the San Joaquin Valley where more than 78,000 residents are estimated to use privately owned domestic wells. Results indicate that inorganic and organic constituents in groundwater were respectively present above regulatory (maximum contaminant level, MCL) benchmarks for public drinking-water quality in 37 percent and 9 percent of the aquifer area used for domestic drinking-water supplies (herein, “domestic groundwater resources”). The most prevalent inorganic constituents exceeding regulatory benchmarks were nitrate, uranium, and arsenic. The only organic constituents exceeding regulatory benchmarks were the fumigant constituents 1,2,3-trichloropropane (1,2,3-TCP) and 1,2-dibromo-3-chloropropane (DBCP), but the herbicides atrazine and simazine were detected at low concentrations below one-tenth of regulatory benchmarks in 30 percent of domestic groundwater resources. Total dissolved solids (TDS) and manganese exceeded aesthetic-based (secondary maximum contaminant level [SMCL]) benchmarks for drinking water in 3 percent and 13 percent of domestic groundwater resources, respectively. Per- and polyfluoroalkyl substances (PFAS) were detected in 23 percent of domestic groundwater resources, with 4 percent exceeding California state notification or response levels for specific compounds. Total coliform bacteria were detected in 20 percent of domestic groundwater resources. Elevated concentrations of nitrate, uranium, TDS, and pesticides (fumigant constituents and herbicides) are related to agricultural land use and were typically present at shallow depths up to 75 meters below land surface. Agriculturally derived constituents were detected in wells screened below the Corcoran Clay Member of the Tulare Formation (herein, “Corcoran Clay”) in the southeastern part of the study area, where the Corcoran Clay tends to be shallower and thinner than in areas to the northwest. Nitrate, uranium, and TDS were most prevalent in the northwest part of the study area proximal to the valley trough where soils are poorly drained and agricultural land uses are predominantly grain, alfalfa, and dairy farms. Pesticides tended to occur in groundwater below coarse-grained surficial deposits and within a northwest to southeast trending band along the eastern extent of the Corcoran Clay that typically demarcates the western extent of well-drained soils associated with perennial orchard crops. Elevated concentrations of arsenic tended to occur west of this band in reducing groundwater but also sometimes co-occurred with elevated nitrate in oxic groundwater, most likely because of geochemical conditions in agriculturally affected groundwater that can enhance the mobility of arsenic from aquifer sediments.

Quality of Groundwater Used for Domestic Supply in the Northern San Joaquin Valley, California

U.S. Geological Survey (USGS) | July 28th, 2021

 Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Moni

 Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project (PBP) of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and provides increased public access to groundwater-quality information. Private domestic and small-system drinking-water wells in the Northern San Joaquin Valley (NSJV) were the target for this assessment. These wells tend to pump water from shallower parts of alluvial aquifers compared to deeper, long-screened public-supply wells in the region. 

Quantification of pre-screen loss of juvenile steelhead in Clifton Court Forebay

California Department of Water Resources (DWR) | August 26th, 2008

Quantification of record-breaking subsidence in California’s San Joaquin Valley

Nature Portfolio (Springer Nature) | November 19th, 2024

Quantifying anthropogenic contributions to century-scale groundwater salinity changes, San Joaquin Valley, California, USA

Science of the Total Environment (Elsevier) | June 15th, 2018

Total dissolved solids (TDS) concentrations in groundwater tapped for beneficial uses (drinking water, irrigation, freshwater industrial) have increased on average by abo

Total dissolved solids (TDS) concentrations in groundwater tapped for beneficial uses (drinking water, irrigation, freshwater industrial) have increased on average by about 100 mg/L over the last 100 y ears in the San Joaquin Valley, California (SJV). D uring this period land use in the SJV changed from natural vegetation and dryland agriculture to dominantly irrigated agriculture with growing urban areas. Century-scale salinity trends were evaluated by comparing TDS concentrations and major ion compositions of groundwater from wells sampled in 1910 (Historic) to data from wells sampled in 1993 –2015 (Modern). TDS concentrations in subregions of the SJV, the southern (SSJV), western (WSJV), northeastern (NESJV), and southeastern (SESJV) were calculated using a cell-declustering method. TDS concentrations increased in all regions, with the greatest increases found in the SSJV and SESJV. Evaluation of the Modern data from the NESJV and SESJV found higher TDS concentrations in recently recharged (post-1950) groundwater from shallow (b50 m) wells surrounded predominantly by agricultural land uses, while premodern (pre-1950) groundwater from deeper wells, and recently recharged groundwater from wells surrounded by mainly urban, natural, and mixed land uses had lower TDS concentrations, approaching the TDS concentrations in the Historic groundwater. For the NESJV and SESJV, inverse geochemical modeling with PHREEQC indicated that weathering of primary silicate minerals accounted for the majority o f the increase in TDS concentrations, contributing more than nitrate from fertilizers and sulfate from soil amendments combined. Bicarbonate showed the greatest increase among major ions, resulting from enhanced silicate weathering due to recharge of irrigation water enriched in CO2 during the growing season. The results of this study demonstrate that large anthropogenic changes to the hydrologic regime, like massive development of irrigated agriculture in semi-arid areas like the SJV, can cause large changes in groundwater quality on a regional scale.

Quantifying the Relationship Between Atmospheric River Origin Conditions and Landfall Temperature

American Geophysical Union (AGU) | October 11th, 2022

The temperature of landfalling atmospheric rivers (ARs) has direct implications for regional water resources. Compared to cool ARs, warm ARs can result in more surface ru

The temperature of landfalling atmospheric rivers (ARs) has direct implications for regional water resources. Compared to cool ARs, warm ARs can result in more surface runoff and flooding, less water availability via low snow accumulations and enhanced snowmelt, and greater challenges for storm forecasting and reservoir operations. Based on case studies, ARs with subtropical origin locations and warm origin conditions are assumed to be associated with warmer landfall temperatures—though, to date, this has not yet been demonstrated systematically. We analyze North Pacific ARs that made landfall along the West Coast of North America from 1980 to 2017. We find that ARs originating over the subtropical Pacific Ocean near Hawaii (“Pineapple Express”-type ARs) are indeed 1.5°C warmer and 2 kg/m2 moister in winter than ARs originating elsewhere. We extend this analysis for the full study population of ARs by quantifying AR origin conditions, including the spatial distribution of origin temperature, moisture content, and integrated vapor transport (IVT). We use fixed effects multivariate regression to quantify the relative influence of the origin conditions on landfall temperature. Our regression models show that AR origins with lower latitudes, longer AR lifetimes, and stronger IVT are associated with warmer landfall temperatures and that ARs that start warm generally stay warm. We also find that the phase of the El Niño/Southern Oscillation does not exhibit a consistent relationship with AR landfall temperature. Overall, our results partially affirm—yet also complicate—common assumptions about the role of different origin conditions in landfalling AR temperature.

Recent advances in understanding flow dynamics and transport of water-quality constituents in the Sacramento–San Joaquin River Delta

University of California, Davis (UC Davis) | December 1st, 2016

This chapter describes advances during the past decade in understanding flow dynamics and how water-quality constituents, such as salinity, heat, oxygen, nutrients, conta

This chapter describes advances during the past decade in understanding flow dynamics and how water-quality constituents, such as salinity, heat, oxygen, nutrients, contaminants, and more, move within California’s Sacramento-San Joaquin River Delta. Water-quality constituents are affected by water diversions and other human manipulations of flow and they greatly affect the quantity and quality of habitats in the Delta. Along with human intervention, the Pacific Ocean, the Central Valley watershed, and the atmosphere, are a few drivers of flow and transport in the Delta. These drivers provide a conceptual framework for presenting recent findings. The tremendous expansion of acoustic and optical instruments utilized in the Delta over the past decade has greatly improved our understanding of how tidal variability affects flow and transport. Sediment is increasingly viewed as a diminishing resource needed to sustain habitat and tidal marsh, especially as sea level rises. Connections between the watershed, Delta, and San Francisco Bay that have been studied recently highlight that a landscape view of this system is needed rather than consideration of each region individually. Interactions of multiple drivers and information gaps are discussed.

Recent and Forecasted Increases in Coccidioidomycosis Incidence Linked to Hydroclimatic Swings, California, USA

U.S. Centers for Disease Control and Prevention (CDC) | March 4th, 2025

Incidence of coccidioidomycosis, an emerging infectious disease caused by Coccidioides spp. fungi, has increased dramatically since 2000. In 2023, California, USA, report

Incidence of coccidioidomycosis, an emerging infectious disease caused by Coccidioides spp. fungi, has increased dramatically since 2000. In 2023, California, USA, reported a near-record 9,054 coccidioidomycosis cases (only surpassed by 9,093 cases in 2019). During April 2023–March 2024, a period capturing the full seasonal rise and fall in incidence, California reported 10,519 cases, 39% higher than the same period the previous year. The 2023 spike in incidence might be attributable, in part, to a swing from extreme drought to heavy precipitation during winter 2022–2023. Transitions from dry to wet years have been linked to increased coccidioidomycosis incidence. Soil moisture during wet winters is hypothesized to support fungal growth, contributing to an abundance of spores available for airborne dispersal during hot, dry conditions characteristic of summer and early fall. Drought preceding rainy seasons might enhance fungal growth by eliminating microbial competitors from soils or by affecting rodent populations, a putative reservoir host and nutrient source for the fungus. During 2020–2022, California experienced severe drought. An unusually wet winter followed in 2022–2023; statewide precipitation exceeded 150% of average, among the top 10 wettest seasons in the past century. Statewide precipitation during the 2023–2024 wet season was 115% of the long-term average, marking the second consecutive wetter-than-average season after a severe drought. That pattern suggested high coccidioidomycosis incidence might continue throughout the 2024 transmission year. We developed a disease forecast to guide public health alerts and messages by pinpointing when and where disease risk is expected to be highest. Such targeted messaging can raise awareness about disease risk, leading to earlier diagnosis and more effective disease management.