San Joaquin River

Managing a cyanobacteria harmful algae bloom “hotspot” in the Sacramento – San Joaquin Delta, California

Journal of Environmental Management (Elsevier) | December 10th, 2023

Managing California’s Freshwater Ecosystems: Lessons from the 2012-16 Drought

Public Policy Institute of California (PPIC) | November 16th, 2017

The 2012–16 drought caused unprecedented stress to California’s ecosystems and pushed many native species to the brink of extinction. It also tested the laws, policie

The 2012–16 drought caused unprecedented stress to California’s ecosystems and pushed many native species to the brink of extinction. It also tested the laws, policies, and institutions charged with protecting the environment. Eight case studies on environmental water management during the drought reveal both strengths and weaknesses in federal, state, and local response that can inform how California addresses future droughts. Three areas of reform hold promise for improving ecosystem conditions and reducing conflict: * Improve water accounting. Drought management requires accurate and timely information about water use and availability and about likely environmental response to changes in water supply. But California’s current tracking systems are neither timely nor transparent. To address these gaps, environmental water accounting and ecosystem monitoring systems need an overhaul. * Prepare for drought. With a few significant exceptions, environmental water managers were unprepared for the environmental consequences of an extended drought, and were forced to make ad hoc decisions during a crisis. Developing watershed-level plans that set ecosystem priorities and identify trade-offs would help managers anticipate drought and drive implementation of habitat investments and water allocation. Annual watering plans that guide management under different types of water years would better engage and inform water users. * Develop ecosystem water budgets. Current methods of allocating water to support ecosystem health rely on minimum flow standards that are unevenly enforced and often insufficient during drought. Ecosystem water budgets, which allocate a portion of water to the ecosystem within watersheds, could enable more flexible and effective water management during dry times. Although state and federal agencies have important

Managing Freshwater Discharge to the San Francisco Bay/Sacramento-San Joaquin Delta Estuary―The Scientific Basis for an Estuarine Standard

San Francisco Estuary Project | October 26th, 1992

Aquatic resources of the Sacramento-San Joaquin Delta and upper portions of San Francisco Bay have undergone significant declines over the past several decades. Species c

Aquatic resources of the Sacramento-San Joaquin Delta and upper portions of San Francisco Bay have undergone significant declines over the past several decades. Species characteristic of the Delta and rivers, such as striped bass and salmon, began to decline during the late 1970s. Prolonged drought, large diversions of fresh water, and dramatic increases in populations of introduced aquatic species during the 1980s and 1990s brought a number of indigenous aquatic species to extremely low levels. Species that spend more of their lives downstream of the Delta, including Delta smelt, longfin smelt, and many zooplankton, maintained large populations through the 1970s, but declined sharply after the mid-1980s. Declines in aquatic resources have led to curtailed fishing seasons, to petitions for endangered species status, and general concern about the health of the estuarine ecosystem.

Managing retreat for sandy beach areas under sea level rise

Nature Portfolio (Springer Nature) | July 24th, 2023

Managing to End Groundwater Overdraft in California’s Central Valley with Climate Change

University of California, Davis (UC Davis) | July 14th, 2016

Several water management cases with climate change are modeled to assess the effects of ending long-term groundwater overdraft in the Central Valley using the Cal

Several water management cases with climate change are modeled to assess the effects of ending long-term groundwater overdraft in the Central Valley using the California Value Integrated Network (CALVIN) model, a hydro-economic optimization model of California’s water system. CALVIN optimizes water management decision-making for the lowest net operating and water scarcity cost over an 82-year period of unimpaired inflows. Recent updates to the CALVIN model include, input hydrology, network representation, agricultural demand and shortage penalties, and hydropower improvements. Management cases evaluated include changes in outflow and inflow requirements for the Sacramento-San Joaquin Delta (Delta), and prohibiting long-term groundwater overdraft. Cases were analyzed over an 82-year modified historical record with a warmer, drier climate, and compared to historical hydrology results. A modelled warmer, drier climate reduces average inflows overall by about 28% and shifts stream flows towards winter and away from spring. Results show large water scarcities south of the Delta without Delta exports, especially for agriculture. Allowing for increased water transfers, Delta exports, conjunctive use, and water recycling and desalination reduces the water supply effects of groundwater overdraft and climate change.

Managing Water Scarcity: A Framework For Fair And Effective Water Right Curtailment In California

Berkeley Law Center for Law, Energy, & the Environment | April 15th, 2023

The report describes the legal context for water right curtailments in California, summarizes the history of curtailment practices in the state, and recommends actions Ca

The report describes the legal context for water right curtailments in California, summarizes the history of curtailment practices in the state, and recommends actions California can take to build an effective framework for curtailment.

Mapping Aquifer Systems with Airborne Electromagnetics in the Central Valley of California

National Groundwater Association (NGWA) | March 9th, 2018

The passage of the Sustainable Groundwater Management Act in California has highlighted a need for cost-effective ways to acquire the data used in building conceptual mo

The passage of the Sustainable Groundwater Management Act in California has highlighted a need for cost-effective ways to acquire the data used in building conceptual models of the aquifer systems in the Central Valley of California. One approach would be the regional implementation of the airborne electromagnetic (AEM) method. We acquired 104 line-kilometers of data in the Tulare Irrigation District, in the Central Valley, to determine the depth of investigation (DOI) of the AEM method, given the abundance of electrically conductive clays, and to assess the usefulness of the method for mapping the hydrostratigraphy. The data were high quality providing, through inversion of the data, models displaying the variation in electrical resistivity to a depth of approximately 500 m. In order to transform the resistivity models to interpreted sections displaying lithology, we established the relationship between resistivity and lithology using collocated lithology logs (from drillers’ logs) and AEM data. We modeled the AEM response and employed a bootstrapping approach to solve for the range of values in the resistivity model corresponding to sand and gravel, mixed coarse and fine, and clay in the unsaturated and saturated regions. The comparison between the resulting interpretation and an existing cross section demonstrates that AEM can be an effective method for mapping the large-scale hydrostratigraphy of aquifer systems in the Central Valley. The methods employed and developed in this study have widespread application in the use of the AEM method for groundwater management in similar geologic settings.

Mark/Recapture Experiments at Clifton Court Forebay to Estimate Pre-Screening Loss to Juvenile Fishes: 1976-1993

California Department of Fish and Wildlife (CDFW) | September 30th, 1997

From October 1976 through November 1993, the California Department of Fish and Game conducted mark/recapture experiments at Clifton Court Forebay, designed to estimate pr

From October 1976 through November 1993, the California Department of Fish and Game conducted mark/recapture experiments at Clifton Court Forebay, designed to estimate pre-screen loss to entrained juvenile fishes. Ten studies were conducted; eight evaluated losses to hatchery-reared juvenile chinook salmon, and two evaluated losses to hatchery-reared juvenile striped bass. Pre-screen loss was calculated from the proportion of marked fish released at the radial gates that were subsequently recaptured during salvage operations at Skinner Fish Facility. The proportion was adjusted for handling mortality, fish facility louver effiCiency, and any subsampling at the facility. Studies were conducted across a wide range of environmental conditions and State Water Project operations, with a wide range in the size ofexperimental fish. Pre-screen loss estimates for juvenile chinook salmon were 63-99%. Potential biases in estimates of pre-screen loss may be due to (1) the calculation for pre-screen loss, (2) underrepresentative and over-representative salvage of experimental fish at Skinner Fish Facility, and (3) the introduction of experimental fish directly into Clifton Court Forebay. A multiple-regression analysis of pre-screen loss to juvenile salmon showed that 91% of the variance in pre-screen loss can be explained by export rate, experimental fish size, and water temperature. 

Maximizing ENSO as a source of western US hydroclimate predictability

Climate Dynamics (Springer) | October 16th, 2019

Until recently, the El Niño–Southern Oscillation (ENSO) was considered a reliable source of winter precipitation predictability in the western US, with a historically

Until recently, the El Niño–Southern Oscillation (ENSO) was considered a reliable source of winter precipitation predictability in the western US, with a historically strong link between extreme El Niño events and extremely wet seasons. However, the 2015–2016 El Niño challenged our understanding of the ENSO-precipitation relationship. California precipitation was near-average during the 2015–2016 El Niño, which was characterized by warm sea surface temperature (SST) anomalies of similar magnitude compared to the extreme 1997–1998 and 1982–1983 El Niño events. We demonstrate that this precipitation response can be explained by El Niño’s spatial pattern, rather than internal atmospheric variability. In addition, observations and large-ensembles of regional and global climate model simulations indicate that extremes in seasonal and daily precipitation during strong El Niño events are better explained using the ENSO Longitude Index (ELI), which captures the diversity of ENSO’s spatial patterns in a single metric, compared to the traditional Niño3.4 index, which measures SST anomalies in a fixed region and therefore fails to capture ENSO diversity. The physically-based ELI better explains western US precipitation variability because it tracks the zonal shifts in tropical Pacific deep convection that drive teleconnections through the response in the extratropical wave-train, integrated vapor transport, and atmospheric rivers. This research provides evidence that ELI improves the value of ENSO as a predictor of California’s seasonal hydroclimate extremes compared to traditional ENSO indices, especially during strong El Niño events.

May Revision Trailer Bill Proposals on the Delta Conveyance Project and Water Quality Control Plans

Legislative Analyst's Office (LAO) | May 27th, 2025

LAO Bottom Line: We recommend deferring action on both proposals, without prejudice. These policy issues do not have budget implications. Deferring action would allow the

LAO Bottom Line: We recommend deferring action on both proposals, without prejudice. These policy issues do not have budget implications. Deferring action would allow the Legislature more time and capacity for sufficient consideration of the potential benefits, implications, and trade-offs. Below, we describe the proposals and note some key issues for the Legislature to keep in mind when it considers these proposals.