Sacramento River

Methodology for Flow and Salinity Estimates in the Sacramento-San Joaquin Delta and Suisun Marsh

California Department of Water Resources (DWR) | June 1st, 2017

This is the 38th annual progress report of the California Department of Water Resources’ San Francisco Bay-Delta Evaluation Program, which is carried out by t

This is the 38th annual progress report of the California Department of Water Resources’ San Francisco Bay-Delta Evaluation Program, which is carried out by the Delta Modeling Section. This report is submitted annually by the section to the State Water Resources Control Board pursuant to its Water Right Decision D-1485, Term 9, which is still active pursuant to its Water Right Decision D-1641, Term 8. This report documents progress in the development and enhancement of computer models for the Delta Modeling Section of the Bay-Delta Office. It also reports the latest findings of studies conducted as part of the program. This report was compiled under the direction of Tara Smith, Program Manager for the Bay-Delta Evaluation Program.

Methodology for Flow and Salinity Estimates in the Sacramento-San Joaquin Delta and Suisun Marsh

California Department of Water Resources (DWR) | December 1st, 2019

Various water resource management actions have been planned to protect and restore salmon populations for a healthy Sacramento-San Joaquin Delta (Delta) ecosystem. Curren

Various water resource management actions have been planned to protect and restore salmon populations for a healthy Sacramento-San Joaquin Delta (Delta) ecosystem. Currently, evaluating the effectiveness of these actions relies on field studies and/or expert opinion. Field studies can be costly and may not provide a comprehensive assessment for a range of applications because of limited study areas, durations, and river conditions. Expert opinion, although valuable, may under- or over-emphasize the importance of certain project components.  To supplement field studies and provide a quantitative assessment tool, the California Department of Water Resources (DWR), in collaboration with the United States Geological Survey (USGS), developed an ecological modeling tool, ECO-PTM. ECO-PTM is an individual-based juvenile salmon migration model that is based on a random-walk particle-tracking method with fish-like behaviors attached to the particles. The behavioral parameters are estimated from acoustic telemetry tag data of juvenile late-fall Chinook salmon (Tag Data) from various field studies (Perry et al. 2018). A stochastic optimization tool, Particle Swarm Optimization, is used to calibrate the swimming behavior parameters. ECO-PTM can simulate juvenile salmonid migration timing, routing, and survival.  This chapter describes ECO-PTM and its behavioral modules, and the model performance and applications to assist water resource management planning, assessment, and decision-making related to juvenile salmonid survival outcomes. 

Methods of Analysis—Determination of Pesticides in Filtered Water and Suspended Sediment using Liquid Chromatography- and Gas Chromatography-Tandem Mass Spectrometry

U.S. Geological Survey (USGS) | January 31st, 2024

The widespread application of pesticides in agricultural and urban areas leads to their presence in surface waters. Presence of these biologically active chemicals in en

The widespread application of pesticides in agricultural and urban areas leads to their presence in surface waters. Presence of these biologically active chemicals in environmental waters potentially has adverse effects on nontarget organisms. To better understand the environmental fate of these contaminants, a robust method to capture chemicals with wide-ranging physicochemical properties has been developed. The method was developed by the U.S. Geological Survey’s Organic Chemistry Research Laboratory to monitor pesticides, pesticide degradates, and other agrochemicals in environmental surface waters throughout the country. The analysis involves a multiresidue method to determine 183 pesticides and pesticide degradates in filtered water samples and 178 pesticides and pesticide degradates in paired suspended sediment samples. After the filtration of whole water, contaminants are individually measured in the filtered water and the collected suspended sediment. Filtered water is extracted via solid-phase extraction, whereas suspended sediment is extracted using an ultrasonication, solid-liquid extraction. Samples are analyzed by liquid chromatography-tandem mass spectrometry using an electrospray ionization source in positive and negative modes and analyzed by gas chromatography-tandem mass spectrometry using an advanced electron ionization source in positive mode. Instrument parameters were optimized for the highest sensitivity, and at least two transitions (quantifier and qualifier) were monitored for each analyte. Recoveries in test filtered water (n=9; 183 analytes) from the American River, California, and suspended sediment (n=9; 178 analytes) samples fortified at 15 nanograms per liter (ng/L) ranged from 70.1 to 121.0 and 71.1 to 117.0 percent in water and suspended sediment filter samples, respectively.

Methods Used to Update Ecosystem Restoration Maps Using New Digital Elevation Model and Tidal Data

Delta Stewardship Council (Delta Council) | June 29th, 2022

Minerals of California Bulletin No. 113

State of California | February 15th, 1938

Missing the Boat on Freshwater Fish Conservation in California

Conservation Letters (Society for Conservation Biology) | March 30th, 2016

Population growth and increasing water‐use pressures threaten California's freshwater ecosystems and have led many native fishes to the brink of extinction. To guide fi

Population growth and increasing water‐use pressures threaten California's freshwater ecosystems and have led many native fishes to the brink of extinction. To guide fish conservation efforts, we provide the first systematic prioritization of river catchments and identify those that disproportionately contribute to fish taxonomic diversity. Using high‐resolution range maps of exceptional quality, we also assess the representation of fish taxa within the state's protected areas and examine the concordance of high‐priority catchments with existing reserves and among distinct taxonomic groups. Although most of the state's native fishes are found within protected areas, only a small proportion of their ranges are represented. Few high‐priority catchments occur within protected areas, suggesting that fish conservation will require active management and targeted river restoration outside of reserves. These results provide the foundation for systematic freshwater conservation planning in California and for prioritizing where limited resources are allocated for fish recovery and protection.

Modeling Barriers and Levee-Break Effects on Delta-Wide Salinity

Delta Stewardship Council (Delta Council) | February 18th, 2016

Modeling Functional Flows in California’s Rivers

Frontiers in Environmental Science (Frontiers) | March 11th, 2022

Modeling the dynamic penetration depth of post-1950s water in unconfined aquifers using environmental tracers: Central Valley, California

Journal of Hydrology (Elsevier) | December 5th, 2022

The penetration depth of post-1950s recharge (D-1950) in aquifers is a marker that is frequently used to identify groundwater that is susceptible to anthropogenic contami

The penetration depth of post-1950s recharge (D-1950) in aquifers is a marker that is frequently used to identify groundwater that is susceptible to anthropogenic contamination. Here, we compute D-1950 values at wells, interpolate them in space, and project them across time to map the moving front of modern recharge in four dimensions in the Central Valley aquifer system, California, USA. Tracers of groundwater age (tritium, carbon-14, noble gases, sulfur hexafluoride, and chlorofluorocarbons) were collected at 650 wells spatially distributed throughout the Central Valley and were fit to a lumped-parameter model that assumes a logarithmic age-depth profile in the aquifer. For samples where tritium was present (>0.3 tritium units), the model was used to predict D-1950 at wells screened above or across the modern-premodern interface (n = 484). Wells with samples where tritium was absent (≤0.3 tritium units) were used to define the depth beyond which groundwater is completely premodern (n = 166). Predicted D-1950 values were below the depth of screen bottoms for wells where groundwater is completely modern, and above the depth of screen tops for wells where groundwater is completely premodern. The interpolated surface of D-1950 is dynamic, less prone to extreme values, and produces maps with lower interpolation errors due to a higher spatial density of wells than maps based on the depth of premodern groundwater. Between 2005 and 2025, D-1950 is expected to deepen by 11 and 12 m in the northern and southern parts of the Central Valley, respectively. Areas where D-1950 increases rapidly are likely to see increases in nitrate and other anthropogenic contaminants associated with the downward moving front of modern water.

Modeling the effect of habitat availability and quality on endangered winter-run Chinook salmon (Oncorhynchus tshawytscha) production in the Sacramento Valley

Ecological Modelling (Elsevier) | March 13th, 2021

Reconciliation between water uses and sustaining aquatic species populations requires an effort to identify and quantify essential habitat characteristics for ecosystem h

Reconciliation between water uses and sustaining aquatic species populations requires an effort to identify and quantify essential habitat characteristics for ecosystem health and valuation methods to predict ecosystem response to restoration actions. This process is particularly challenging for anadromous fish species such as California's Sacramento River winter-run Chinook salmon, due to their limited geographic range and diverse life history habitat requirements. Tools, such as life-cycle models, are needed to manage population dynamics and quantify the composite effects of processes across space and time. Nevertheless, complex institutions can hinder result interpretation and communication, and limit model use in decision-making. This paper focuses on the federally endangered and endemic Sacramento River winter-run Chinook (Oncorhynchus tshawytscha) by developing a Winter-Run Habitat-based Population Model (WRHAP). WRHAP is a conceptual, freshwater rearing stage model that includes alternative rearing habitats reported in the literature (e.g., floodplains, off-channel and tributaries), defines rules of habitat use based on instream conditions, and incorporates a juvenile growth module that combines bioenergetics modeling with empirical growth rates. Model outputs reasonably follow observed out-migration patterns and provide a realistic smolt size distribution arriving at the San Francisco Bay. This effort demonstrates the importance of currently “non-critical” habitats (as defined by the Endangered Species Act) for juvenile development, with floodplain habitat contributing to a quarter of out-migrating biomass (despite < 18% availability and <10% of total rearing days), and off-channel growth being one of the most sensitive parameters (explaining ~13% of average juvenile weight variance). The model shows the utility of a simple population model to explore relationships between habitat quality/quantity and juvenile development, and to assist water/environmental management and decision-making processes focused on species recovery.