Petition for Extension of Time to Perfect Conditional Water Rights Under the State Water Project Permits (SWP) 16478, 16479, 16481, and 16482 for Water Supply and Permits 16477 and 16480 for Hydropower Operations

California Department of Water Resources (DWR) | January 21st, 2025

Click here for DWR press release and related correspondence.

Click here for DWR press release and related correspondence.

Petition For Rulemaking to Set Minimum Flows on the Shasta River

Mount Shasta Bioregional Ecology Center | January 20th, 2024

Decades of scientific inquiry make clear that adequate quality and quantity of flows are needed to prevent remaining fish populations from further decline. Yet this scien

Decades of scientific inquiry make clear that adequate quality and quantity of flows are needed to prevent remaining fish populations from further decline. Yet this science is not self-executing; effective government intervention is necessary to prevent the extirpation of salmonids in the Shasta. This type of government action is at the core of the Public Trust Doctrine, which requires the government to act as a trustee over public trust resources, and to the extent feasible, step in to protect these resources from over-allocation and over-use.

PFAS in San Francisco Bay Water

San Francisco Estuary Institute (SFEI) | November 14th, 2022

Per- and polyfluoroalkyl substances (PFAS), a family of thousands of synthetic, fluorine-rich compounds commonly referred to as “forever chemicals,” are known for the

Per- and polyfluoroalkyl substances (PFAS), a family of thousands of synthetic, fluorine-rich compounds commonly referred to as “forever chemicals,” are known for their thermal stability, non-reactivity, and surfactant properties. These unique compounds have widespread uses across consumer, commercial, and industrial products, resulting in widespread occurrence in the environment and wildlife across the globe. This study analyzed ambient surface water in San Francisco Bay for 40 PFAS to discern the occurrence, fate, and potential risks to ecological and human health.

Phase II: Alternative Courses of Action to Provide Delta Protection and Adequate Water Supplies for California

California Department of Water Resources (DWR) | March 15th, 1976

Phenomenological vs. biophysical models of thermal stress in aquatic eggs

Ecology Letters (Wiley) | January 1st, 2017

Predicting species responses to climate change is a central challenge in ecology. These predictions are often based on lab-derived phenomenological relationships between

Predicting species responses to climate change is a central challenge in ecology. These predictions are often based on lab-derived phenomenological relationships between temperature and fitness metrics. We tested one of these relationships using the embryonic stage of a Chinook salmon population. We parameterised the model with laboratory data, applied it to predict survival in the field, and found that it significantly underestimated field-derived estimates of thermal mortality. We used a biophysical model based on mass transfer theory to show that the discrepancy was due to the differences in water flow velocities between the lab and the field. This mechanistic approach provides testable predictions for how the thermal tolerance of embryos depends on egg size and flow velocity of the surrounding water. We found support for these predictions across more than 180 fish species, suggesting that flow and temperature mediated oxygen limitation is a general mechanism underlying the thermal tolerance of embryos.

Physical and Hydrologic Assessment of the Carmel River Watershed California

California State University, Monterey Bay (CSUMB) | November 1st, 2004

The Carmel Watershed is a terrestrial jewel in the California landscape. Its forested headwaters harvest rain from the Pacific storms each winter, providing a nat

The Carmel Watershed is a terrestrial jewel in the California landscape. Its forested headwaters harvest rain from the Pacific storms each winter, providing a natural cascade of resources enjoyed by human residents and the broader ecosystem. Although the Carmel River is not currently listed as “impaired” by the State of California, there have been significant human impacts that could lead to impaired waters. These impacts are now recognized and defined in this report so that remediation and future management policies can be developed. This report is one facet of the Carmel Watershed Assessment orchestrated by the Carmel River Watershed Conservancy. We assess the physical and hydrologic components of the watershed, chiefly focusing on two major classes of problems, water quantity and excess sediment. Both of these issues are important when considering human needs and the needs of the broader ecosystem, including endangered aquatic and riparian species. The Carmel Watershed has finite annual rainfall as its only water resource. That resource is currently stretched too thin, leaving new urban, suburban, rural, and industrial development in and around the watershed at odds with pre-existing water appropriation and environmental requirements (e.g., SWRCB, 1995a; 1995b). Certain kinds of common land-uses and road designs supply excess sediment above natural background rates. Some of the major problems in the watershed are summarized below, in no particular order. Demand for water far exceeds water supply, leading to many related subordinate problems, including diminished surface water for endangered steelhead trout. Extensive urbanization exists within the regulatory 100-year floodplain and in the dam-failure inundation zone. Excess sediment is generated from a very large number of dirt roads, some of which are abandoned, some of which out of compliance with grading ordinances, but most of which are clearly within regulations. Nearly all sub-road drainage culverts are undersized, leading to downstream erosion, whether related to dirt roads, paved roads, or highways. Excess sediment is generated by a great number of bare road cuts on dirt roads, paved roads, and highways. Excess sediment is generated in the Los Chupines and Sycamore Creek drainages by soil slip, gullies, unstable stream banks, and roads. Many of those issues are related to cattle impacts. Excess sediment is generated in a great number of incised streams that have tall, exposed banks. San Clemente Dam is unsafe owing to sediment burden and proximity to active faults. Decommissioning the San Clemente Dam will likely lead to a significant shift in river morphology and flood response, owing to the restoration of historic bedload transport rates. Los Padres Dam is rapidly infilling with sediment and is also close to active faults. Watershed impairment is the result of incremental, permitted, changes that have a large cumulative impact on the watershed. Closer adherence to the Carmel Valley Master Plan (CVMP, 1996; Appendix C) and County ordinances will foster resource sustainability and aesthetic living conditions. Among the salient points in that document are the following guidelines for development (CVMP, 1996). 1. Preserve the rural character of the Carmel Valley 2. Protect all natural resources with emphasis on biological communities, agricultural lands, the Carmel River and its Riparian corridor, air quality and scenic resources. We note that the large-scale negative impacts we describe in the Carmel Watershed mainly resulted from the cumulative effects of small, insignificant, permitted landscape or hydrologic alterations (e.g., Dunne et al., 2001). With that in mind, guidelines for sustainable resource use could begin with an agreed upon ultimate level of resource use, depletion, or degradation, beyond which, no further landscape or hydrologic alterations will be permitted. Using water supply as an example, the best strategy for sustainability is to determine the total cumulative resource usage, and then stop permitting further requests for resource use when the agreed upon cumulative impact is met—the concept of water rights appropriation. This same “cumulative impact” management strategy could be applied to other cumulative watershed impacts, such as total miles of dirt road per square mile of watershed area, or total area of impervious cover per square mile of watershed area. These strategies can be applied once a cumulative impact target has been established upon sound science, and codified by stakeholder agreement. Considering that the cumulative negative impacts in the watershed are the net result of innumerable, insignificant modifications, we can predict that innumerable, small positive restorative efforts in the watershed would eventually produce large positive impacts on watershed health including water quality and quantity.

Physical Characteristics of the Lower San Joaquin River, California, in Relation to White Sturgeon Spawning Habitat, 2011–14

U.S. Geological Survey (USGS) | July 18th, 2017

The U.S. Fish and Wildlife Service confirmed that white sturgeon (Acipenser transmontanus) recently spawned in the lower San Joaquin River, California. Decreases in the S

The U.S. Fish and Wildlife Service confirmed that white sturgeon (Acipenser transmontanus) recently spawned in the lower San Joaquin River, California. Decreases in the San Francisco Bay estuary white sturgeon population have led to an increased effort to understand their migration behavior and habitat preferences. The preferred spawning habitat of other white sturgeon (for example, those in the Columbia and Klamath Rivers) is thought to be areas that have high water velocity, deep pools, and coarse bed material. Coarse bed material (pebbles and cobbles), in particular, is important for the survival of white sturgeon eggs and larvae. Knowledge of the physical characteristics of the lower San Joaquin River can be used to preserve sturgeon spawning habitat and lead to management decisions that could help increase the San Francisco Bay estuary white sturgeon population. Between 2011 and 2014, the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, assessed selected reaches and tributaries of the lower river in relation to sturgeon spawning habitat by (1) describing selected spawning reaches in terms of habitat-related physical characteristics (such as water depth and velocity, channel slope, and bed material) of the lower San Joaquin River between its confluences with the Stanislaus and Merced Rivers, (2) describing variations in these physical characteristics during wet and dry years, and (3) identifying potential reasons for these variations. The lower San Joaquin River was divided into five study reaches. Although data were collected from all study reaches, three subreaches where the USFWS collected viable eggs at multiple sites in 2011–12 from Orestimba Creek to Sturgeon Bend were of special interest. Water depth and velocity were measured using two different approaches—channel cross sections and longitudinal profiles—and data were collected using an acoustic Doppler current profiler. During the first year of data collection (water year 2011), runoff was greatest, and gaged streamflow, measured as discharge, peaked at 875 cubic meters per second in the lower San Joaquin River. Also during that year, water velocity was generally between 0.6 and 0.9 meters per second, and depth was typically between 2.5 and 4.5 meters, but water depth exceeded 6 meters in several pools. Water year 2011 was classified as a “wet” year. Later water years were classified as either “dry” (water year 2012) or “critical” (water years 2013 and 2014). During the drier years, water was shallower, and velocities were slower. The streambed aggraded in several areas during the study. At Sturgeon Bend, for example, which had the deepest pool measured in 2011 (maximum depth was 14 meters), about 8 meters of sediment was deposited by 2014. The bed of the lower San Joaquin River was predominately sand, except in areas downstream from the mouth of Del Puerto Creek. A large amount of sand, gravel, and cobble was deposited at the mouth of Del Puerto Creek, and in the 9.5 kilometers downstream from the mouth of Del Puerto Creek, we encountered several gravel bars and patches of gravel-size (8–64 millimeters) bed material. Del Puerto and Orestimba Creeks drain from the Coast Ranges on the west side of the river. Only small quantities of gravel-size bed material were observed in the reach downstream from Orestimba Creek, indicating Orestimba Creek does not deliver much coarse sediment to the lower San Joaquin River. Del Puerto Creek appeared to be the primary source of gravels suitable for white sturgeon spawning in the lower San Joaquin River, and thus, it is important for the long-term spawning success of sturgeon in the San Joaquin River.

Physics to Fish: Understanding the Factors that Create and Sustain Native Fish Habitat in the San Francisco Estuary

U.S. Geological Survey (USGS) | January 16th, 2024

The Bureau of Reclamation (Reclamation) operates the Central Valley Project (CVP), one of the nation’s largest water projects. Reclamation has an ongoing need to impro

The Bureau of Reclamation (Reclamation) operates the Central Valley Project (CVP), one of the nation’s largest water projects. Reclamation has an ongoing need to improve the scientific basis for adaptive management of the CVP and, by extension, joint operations with California’s State Water Project. The U.S. Geological Survey (USGS) works cooperatively with the Bureau of Reclamation to provide scientific support for the management of Reclamation’s CVP project. Major habitat restoration efforts and a new water-diversion point are planned to benefit delta smelt (Hypomesus transpacificus) and other species of concern while ensuring the reliability of water supply. In addition, various flow actions and management activities have been identified as possible methods to increase populations of delta smelt and salmonid (Oncorhynchus spp.) runs of concern. The overarching goal of this cooperative project was to provide Reclamation with the scientific information needed to evaluate the efficacy of ongoing and future adaptive management actions and to improve the scientific basis for more flexible CVP operations that would achieve water-supply reliability and fish protection. The research and monitoring described in this report comprises the period 2015–19 and focuses on management issues related to native fish species of concern, especially delta smelt. Conserving the delta smelt population while providing a reliable water supply is a primary management and policy issue in California.

Phytoplankton, and Related Water-Quality Constituents in the California Sacramento– San Joaquin Delta at the Landscape Scale: 2018 High Resolution Mapping Surveys

U.S. Geological Survey (USGS) | April 1st, 2024

This study examined the abundance and distribution of nutrients and phytoplankton in the tidal aquatic environments of the Sacramento–San Joaquin Delta (Delta) and Suis

This study examined the abundance and distribution of nutrients and phytoplankton in the tidal aquatic environments of the Sacramento–San Joaquin Delta (Delta) and Suisun Bay, comprising three spatial surveys conducted in May, July, and October of 2018 that used continuous underway high frequency sampling and measurements onboard a high-speed boat to characterize spatial variation across the extent of the Delta. The method used involves simultaneously collecting information about the concentration and spatial distribution of all major nutrient forms with analogous information about the major classes of phytoplankton and associated water-quality conditions. The results showed substantial variation across space and time, providing an unprecedented snapshot of the dynamic environmental processes that shape the ways nutrients interact with and affect aquatic habitats in the Delta.

Pilot Projects to Increase Colorado River System Water in Lake Powell and Lake Mead

U.S. Bureau of Reclamation (USBR) | January 14th, 2022

From calendar year 2015 through 2018, 64 projects were implemented in the Upper Basin resulting in an estimated 47,280 acre-feet of Colorado River System water conserved

From calendar year 2015 through 2018, 64 projects were implemented in the Upper Basin resulting in an estimated 47,280 acre-feet of Colorado River System water conserved in the Upper Basin at a cost of $8.5 million or $180.23 per acre-foot on average. From January 2015 through December 31, 2019 in the Lower Basin, 16 projects were implemented which will result in 175,347 acre-feet of Colorado River System water in Lake Mead by 2035, at a cost of approximately $29.8 million or $170.14 per acre-foot on average. The Pilot Program successfully demonstrated that voluntary, compensated water conservation projects can conserve water for Colorado River System storage to help mitigate the impacts of drought.