USGS Science at Work in the Delta Estuary

U.S. Geological Survey (USGS) | November 19th, 2013

The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 m

The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 million California residents and vast farmlands, as well as key habitat for birds, fish, and other wildlife. To help ensure the health of this crucial estuary, the U.S. Geological Survey, in close cooperation with partner agencies and organizations, is providing science essential to addressing societal issues associated with water quantity and quality, sediment transportation, environmental contamination, animal health and status, habitat restoration, hazards, ground subsidence, and climate change.

USGS Science at Work in the San Francisco Bay and Sacramento-San Joaquin Delta Estuary

U.S. Geological Survey (USGS) | ?

The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 m

The San Francisco Bay and Sacramento-San Joaquin Delta form one of the largest estuaries in the United States. The “Bay-Delta” system provides water to more than 25 million California residents and vast farmlands, as well as key habitat for birds, fish, and other wildlife. To help ensure the health of this crucial estuary, the U.S. Geological Survey, in close cooperation with partner agencies and organizations, is providing science essential to addressing societal issues associated with water quantity and quality, sediment transportation, environmental contamination, animal health and status, habitat restoration, hazards, ground subsidence, and climate change.

Using a Time-of-Travel Sampling Approach to Quantify Per- and Polyfluoroalkyl Substances (PFAS) Stream Loading and Source Inputs in a Mixed-Source, Urban Catchment

American Chemical Society (ACS) | September 16th, 2024

Using Conceptual Models and Decision-Support Tools to Guide Ecosystem Restoration Planning and Adaptive Management: An Example from the Sacramento–San Joaquin Delta, California

University of California, Davis (UC Davis) | October 1st, 2012

The Sacramento–San Joaquin Delta (the Delta) is located on the western edge of California’s Central Valley and is of critical ecological and economic importance. H

The Sacramento–San Joaquin Delta (the Delta) is located on the western edge of California’s Central Valley and is of critical ecological and economic importance. However, ecosystem alterations for human uses changed many of the Delta’s natural processes, and it is now considered in need of restoration. An approach was developed to evaluate and rank restoration actions in the Delta under the Ecosystem Restoration Program’s Delta Regional Ecosystem Restoration Implementation Plan (DRERIP). The DRERIP approach provides an explicit framework for evaluating restoration actions, using linked conceptual models, an action evaluation procedure, and a decision-support tool. Conceptual models allow scientists and managers to synthesize scientific information and make qualitative predictions about ecosystem function and restoration outcomes to guide and focus restoration efforts. The action evaluation procedure is a structured assessment of restoration actions. The procedure clearly describes actions to be evaluated, assesses the magnitude (importance and scale) and certainty of anticipated ecological outcomes, estimates degrees of worth (achieving intended outcomes) and risk (causing adverse consequences), evaluates the reversibility of the action, and identifies opportunities for learning. The values for worthiness, risk, reversibility, and learning opportunity are used in the decision- support tool to determine the fate of a proposed action. The decision-support tool is a structured decision tree that determines the disposition of an action: whether a restoration project should be discarded, revised with a different approach and re-evaluated, or implemented; and, if implemented, at what scale (targeted research, pilot project, or full implementation). The DRERIP approach provides managers with a valuable tool for restoration planning, and a foundation for integration with quantitative methods for a comprehensive ecosystem restoration plan.

Using Graywater and Stormwater to Enhance Local Water Supplies: An Assessment of Risks, Costs, and Benefits

National Academy of Sciences (NAS) | December 1st, 2016

Much of the United States faces chronic or episodic water shortages. It is the topic of daily news in the West, where a historic 4-year drought has caused California to

Much of the United States faces chronic or episodic water shortages. It is the topic of daily news in the West, where a historic 4-year drought has caused California to restrict the delivery of water to cities and farms. At the same time, the Midwest and Northeast have received drenching rains and heavier than normal snow. Against this backdrop—of not enough water or too much water—the National Academies of Sciences, Engineering, and Medicine’s Water Science and Technology Board initiated a study on the beneficial use of stormwater and graywater. Graywater is a year-round source of water for nonpotable use, and use of urban stormwater can augment local water supplies, reduce demand for imported water, and lessen impacts from discharge.

Using Landsat and MODIS satellite collections to examine extent, timing, and potential impacts of surface water inundation in California croplands

Remote Sensing Applications: Society and Environment (RSASE) | October 1st, 2022

The state of California, United States of America produces many crop products that are both utilized domestically and exported throughout the world. With nearly 39,000 km

The state of California, United States of America produces many crop products that are both utilized domestically and exported throughout the world. With nearly 39,000 km2 of croplands, monitoring unintentional and intentional surface water inundation is important for water resource management and flood hazard readiness. We examine inundation dynamics in California croplands from 2003 to 2020 by intersecting monthly surface water maps (n = 216 months) derived using two satellite remote sensing platforms (Landsat and Moderate Resolution Imaging Spectroradiometer [MODIS]) with a high-quality cropland map generated by the California Department of Water Resources. Surface water maps were produced using the Dynamic Surface Water Extent model, in which satellite image pixels are classified into different levels of detection confidence. Our analysis focused on calculating monthly and annual occurrence of “high confidence” water for each satellite collection across eight cropland types and 58 counties. Results indicate that 49.9% (MODIS) to 56.4% (Landsat) of croplands were inundated at least once during the 18-year timespan. Rice crops, due to their unique need of consistent surface water and dominance as a crop type in CA, had the highest proportion of and mean annual inundation area, while citrus crops had the lowest. Mean monthly inundation patterns in most croplands followed California's precipitation patterns with high inundation during the winter and spring rainy season. At the county level, croplands in the southern Central Valley typically had high occurrences of inundation in conjunction with large crop areas. Exposure and sensitivity of inundation for three crop types (citrus, deciduous, and vineyards) that are typically less associated with intentional inundation were geographically variable, but overall were generally highest in counties in the southern Central Valley, California's primary agricultural region. Flood and precipitation related crop insurance claims indicated that rice had the highest mean indemnity payout for any month with damages typically occurring in March and April. Insurance claims were also high in deciduous fruit and nut crops, which had peak damages in February. A comparison between inundation results and insurance claims suggests that the inundation mapped by our process coincides with claim activity. These data elucidate water inundation patterns across the state that can serve to inform farmers, insurers, decision makers, resource managers, and flood mitigation professionals.

Using machine learning to predict 1,2,3-trichloropropane contamination from legacy non-point source pollution of groundwater in California's Central Valley

Elsevier | May 6th, 2023

1,2,3-tricholoropropane (TCP) is an impurity common in nematicides applied to agricultural soils from the 1940s to the 1980s. Evidence from animal studies indicates t

1,2,3-tricholoropropane (TCP) is an impurity common in nematicides applied to agricultural soils from the 1940s to the 1980s. Evidence from animal studies indicates that TCP is a probable human carcinogen. TCP leaches through the soil into groundwater where it persists and contaminates thousands of wells in Asia, Europe, and North America. In California, TCP contaminates drinking water wells, with the highest levels of TCP beneath agricultural land used to grow grapevines. This study performs a mass balance and evaluates the ability of three types of tree-based machine learning models to predict TCP concentration in California's Central Valley aquifer system: classification and regression trees (CART), Random Forest (RF), and Boosted Regression Trees (BRT). To construct the models, multiple spatial explanatory variables were used, including historical agricultural land use data, irrigation levels, precipitation, soil type, groundwater age, redox state, and the presence of the co-contaminant nitrate. To estimate the amount of TCP applied to farmland in California, state historical pesticide and land use documents were used in the mass balance. Between 110,000 and 4,300,000 kg of TCP are estimated to have accumulated in the subsurface. Machine learning models indicate that the most important explanatory variables to predict TCP contamination of groundwater are precipitation, redox state, and the presence of the co-contaminant nitrate. Additionally, a 1000-m buffer area offers a slightly higher predictive performance as compared to 500-m and 1500-m buffers. Furthermore, the RF model outperforms CART and BRT for predictive performance. Finally, modeling using decision trees can predict TCP contamination levels in areas where monitoring is lacking, help target future TCP monitoring efforts, and aid in identifying areas to avoid when drilling new drinking water wells.

Using Multiple Biological and Habitat Condition Indices for Bioassessment of California Streams

California State Water Resources Control Board (SWRCB) | July 1st, 2016

A long-term goal of the SWAMP bioassessment program has been to use multiple indices of ecological condition in conjunction to produce more complete assessments

A long-term goal of the SWAMP bioassessment program has been to use multiple indices of ecological condition in conjunction to produce more complete assessments of stream health than provided by any single index alone. Ideally, combined assessments should be based on different taxonomic assemblages, taking advantage of their different responses to various stressors deriving from upstream land use practices. In this study, the combined use of three ecological indices currently used to assess stream condition in California was explored. The indices used were the California Stream Condition Index (CSCI) based on benthic macroinvertebrates, the “H20” index based on diatoms and soft algae, and the California Rapid Assessment Method (CRAM) for riparian habitat condition. First, comparisons of index performance were used to assess whether cases of disagreement among indices indicate moderate levels of stress, to which some taxonomic assemblages (or physical habitat indicator in the case of CRAM) have responded but not others, or whether disagreement among indices was more likely to be “noise” due to poor performance in one or more index. H20 and CRAM did not perform as well as CSCI on a statewide scale for some performance measures, but often performed better than null CSCI, which was used as a benchmark for what would constitute poor index performance. Second, the frequency with which the three indices agreed and disagreed about site condition was assessed to identify whether cases of agreement and disagreement occur in systematic and predictable ways that relate to the particular stressor(s) affecting the site. Patterns of agreement and disagreement among the 3 indices were non-random: the indices frequently agreed that reference sites were not degraded, and that high - activity sites were degraded. Disagreements were most common at sites with moderate amounts of human activity. Where the indices disagreed, CSCI and CRAM were more sensitive to physical habitat stressors, whereas H20 was more sensitive to chemical stressors. The use of multiple indices in conjunction to infer the ecological condition of streams, each based on a different taxonomic assemblage or data type, greatly strengthens confidence in results from bioassessment surveys, reduces the likelihood of incorrect conclusions from sampling error or natural variability, and improves our ability to diagnose causes of degradation.

Using Sentinel‐1 and GRACE satellite data to monitor the hydrological variations within the Tulare Basin, California

Nature Portfolio (Springer Nature) | March 9th, 2022

Subsidence induced by groundwater depletion is a grave problem in many regions around the world, leading to a permanent loss of groundwater storage within an aquifer and

Subsidence induced by groundwater depletion is a grave problem in many regions around the world, leading to a permanent loss of groundwater storage within an aquifer and even producing structural damage at the Earth’s surface. California’s Tulare Basin is no exception, experiencing about a meter of subsidence between 2015 and 2020. However, understanding the relationship between changes in groundwater volumes and ground deformation has proven difficult. We employ surface displacement measurements from Interferometric Synthetic Aperture Radar (InSAR) and gravimetric estimates of terrestrial water storage from the Gravity Recovery and Climate Experiment (GRACE) satellite pair to characterize the hydrological dynamics within the Tulare basin. The removal of the long-term aquifer compaction from the InSAR time series reveals coherent short-term variations that correlate with hydrological features. For example, in the winter of 2018–2019 uplift is observed at the confluence of several rivers and streams that drain into the southeastern edge of the basin. These observations, combined with estimates of mass changes obtained from the orbiting GRACE satellites, form the basis for imaging the monthly spatial variations in water volumes. This approach facilitates the quick and effective synthesis of InSAR and gravimetric datasets and will aid efforts to improve our understanding and management of groundwater resources around the world.

Using the Distinct Population Segment concept to protect fishes with low levels of genomic differentiation: conservation of an endemic minnow (Hitch, Lavinia exilicauda)

American Fisheries Society (AFS) | December 23rd, 2018

In the United States, the Endangered Species Act (ESA) of 1973 was enacted to conserve species that are endangered or threatened throughout all or a portion of their rang

In the United States, the Endangered Species Act (ESA) of 1973 was enacted to conserve species that are endangered or threatened throughout all or a portion of their range. The definition of “species” includes subspecies and distinct population segments (DPSs). Among freshwater fishes, the use of DPS designations has largely been restricted to salmonids, although the DPS concept is increasingly applied to other fishes as well. As more taxa approach threatened status, the difficult question becomes what to do when genetic evidence does not strongly support formal taxonomic designations (full species or subspecies). We examine the potential application of the DPS concept to protect fishes by using the example of the Hitch Lavinia exilicauda, a cyprinid fish that is endemic to California. The Hitch is divided into three formally described, geographically separate subspecies (the Sacramento, Monterey, and Clear Lake Hitches). However, genomic studies (i.e., restriction site‐associated DNA sequencing), presented here with three independent analyses using a large data set, only weakly supported subspecies designations. Results suggested population structure but not subspecies structure. Nevertheless, conventional taxonomic methods, strong contemporary isolation, the importance of protecting genetic diversity, and high cultural value still qualify all three designated subspecies for DPS status and demonstrate how taxa such as the Clear Lake Hitch can warrant protection under the ESA.